Hi guys,
Hope you all had a wonderful holiday. I hate to bring this back up
again, but I am still having trouble with TPP demo 2009 (http://
tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009).
Specifically with steps 7 through 9. I have trouble opening
interact.pep.xml through PepXML. I
Correction: Step 10's ProteinProphet works for me. Mainly I only have
trouble opening the interact.pep.xml
On Jan 12, 1:00 pm, Chris L linci%uci@gtempaccount.com wrote:
Hi guys,
Hope you all had a wonderful holiday. I hate to bring this back up
again, but I am still having trouble
It might be helpful if you can provide the version numbers of
ActivePerl, TPP and Apache to us.
I use
http://localhost:8080/tpp-bin/tpp_gui.pl
to log-in. Perhaps it will work for you too.
ps. I am not a TPP developer and have just as much trouble trying to
get TPP to work ;)
Regards,
Chris
On
, 2011 at 5:20 PM, Chris L
linci%uci@gtempaccount.comwrote:
Hi Vishal,
Thank you for your continuous support. I am not in a great hurry to
have TPP working so you do not need to place this in your priority. I
have explored those websites and they all seemed like a foreign
Vishal
On Wed, Nov 9, 2011 at 2:12 PM, Chris L linci%uci@gtempaccount.comwrote:
Dear all,
Sorry for reposting the thread, but I am still having trouble
accessing Pep3D and some other features of TPP, namely the ones that
allow me to view my output xml files. I am running Windows
Dear all,
Sorry for reposting the thread, but I am still having trouble
accessing Pep3D and some other features of TPP, namely the ones that
allow me to view my output xml files. I am running Windows XP Service
Pack 3, TPP v4.5 RAPTURE rev 0, Apache 2.2.21 (win32), and ActivePerl
5.14.2. I am
know this first..
a) Perl version ?, from command prompt use this
perl -version
b) Please try running X-Interact and see if it is successful, X-Interact
uses PepXMLViewe.cgi and we will come to know if it passes this.
Thanks
Vishal
On Mon, Oct 31, 2011 at 2:13 PM, Chris L
linci%uci
samples on
net.http://encodable.com/internal_server_error/
Also, this might be of
helphttp://ask-leo.com/whats_an_internal_server_error_and_how_do_i_fix_it...
On Fri, Oct 28, 2011 at 3:57 PM, Chris L
linci%uci@gtempaccount.comwrote:
Hi Vishal and all,
I did a fresh install
Refresher: I am having problem opening interact.pep.xml with TPP at
tutorial step 7: Visualize LC-MS/MS data using Pep3D. (http://
tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009)
On Oct 31, 11:03 am, Chris L linci%uci@gtempaccount.com wrote:
Update: I was able to do the test.cgi
as per your path...
On Fri, Oct 21, 2011 at 1:23 PM, Chris L li...@uci.edu wrote:
Hi Vishal and all,
I am doing step 7: Visualize LC-MS/MS data using Pep3D in TPP Demo
2009 (http://tools.proteomecenter.org/wiki/index.php?
title=TPP_Demo2009)
a) I had C:\tmp to begin with
b) I am
have information of host and port.
Hope this helps..
On Tue, Oct 18, 2011 at 7:46 PM, Chris L li...@uci.edu wrote:
localhost/tpp-bin/tpp_gui.pl
The web browser changes it towww.localhost.comautomatically.
Chris
On Oct 18, 4:44 pm, Chris L li...@uci.edu wrote:
No, I havehttp
20, 3:39 pm, Chris L li...@uci.edu wrote:
Changing the domain to localhost:8080 solved the problem.
Thanks a lot Vishal.
Regards,
Chris
On Oct 19, 6:55 am, Vishal Swaroop vishal@gmail.com wrote:
Which browser you are using, firefox ?, try using IE or other
First check if Apache
, Chris L li...@uci.edu wrote:
Dear all,
I am experimenting with the TPP demo 2009 (http://
tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009) and
encountered two problems.
First, for step 6: Validation of Peptide-Spectrum assignments with
PeptideProphet, I can never get past
-
From: spctools-discuss@googlegroups.com
[mailto:spctools-discuss@googlegroups.com] On Behalf Of Chris L
Sent: Tuesday, October 18, 2011 3:28 PM
To: spctools-discuss
Subject: [spctools-discuss] Re: TPP Demo 2009
Hi Luis and all,
I have uninstalled Microsoft IIS from the windows
localhost/tpp-bin/tpp_gui.pl
The web browser changes it to www.localhost.com automatically.
Chris
On Oct 18, 4:44 pm, Chris L li...@uci.edu wrote:
No, I havehttp://www.localhost.com/tpp-bin/tpp_gui.pl
Formatting of my post caused the confusion
Regards,
Chris
On Oct 18, 4:19 pm, Vensel
Dear all,
I am experimenting with the TPP demo 2009 (http://
tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009) and
encountered two problems.
First, for step 6: Validation of Peptide-Spectrum assignments with
PeptideProphet, I can never get past the Run XInteract step. My
command does
tutorial that we have linked
from the top of that page.
Cheers,
--Luis
On Fri, Oct 7, 2011 at 8:36 AM, Chris L li...@uci.edu wrote:
Hi again,
I am trying to follow the SEQUEST data analysis tutorial in the
following link
http://tools.proteomecenter.org/wiki/index.php?title=TPP_Tutorial
Update: the image file showed up after a couple minutes http://flic.kr/p/av4925
Chris
On Oct 11, 3:42 pm, Chris L li...@uci.edu wrote:
Thank you for your help Luis,
TPP does not look for .mzXML files after I did the re-index operation
and instead looks for .new.mzXML files so I ended up
blank for over 15
minutes.
Meanwhile, I will experiment with the TPP Demo 2009 (http://
tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009) and keep
you updated. Thanks for all of your help.
Regards,
Chris
On Oct 11, 3:52 pm, Chris L li...@uci.edu wrote:
Update: the image file showed up
to? Please also note that you must set the
pipeline type to Sequest on the home page if you wish to convert .out
files to pepXML; leaving it set to Tandem will tell the software to only
look for files of that type.
Cheers,
--Luis
On Thu, Oct 6, 2011 at 5:48 PM, Chris L li...@uci.edu wrote
.tandem files somewhere? Any input is appreciated. Thank
you.
Sincerely,
Chris L
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