The final piece of the jigsaw, in case anyone has similar problems.

The Arduino IDE wouldn't talk to the Arduino board because
serial.debug_rate in ~/.arduino/preferences.txt was set to 14400, a
value not supported by the port (something to do with the ftdi_sio
driver?).

Setting this value to 9600 cured my final problem.

The relevant thread on the Arduino forum is:
http://www.arduino.cc/cgi-bin/yabb2/YaBB.pl?num=1222121634


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