Try this:
mri_vol2vol --mov aseg.mgz --targ rawavg.mgz --o aseg-in-native.mgz
--regheader --interp nearest
doug
joel bruss wrote:
Hello-
I'm running FreeSurfer v4.01on SUSE Linux
I'm interested in viewing the sub-cortical parcels, /mri/aseg.mgz, but
in the native MRI space. I see that the output of "CA Label" produces
a file that is fit to the "CA Normalize" step but I can't figure out
the transform that was used. Specifically, for CA Normalize, if I
look under /mri/transforms, and sort by time, I have both the
talairach.lta and talairach.m3z files, but neither will get me from
native to norm space (or vice-versa). Is there a transform file that
I'm missing or is this a process of intermediate steps to get from
native to norm space? Please help!
Thanks,
Joel
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Douglas N. Greve, Ph.D.
MGH-NMR Center
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