Look in $FREESURFER_HOME/FreeSurferColorLUT.txt
doug
joel bruss wrote:
This is the last question that I have...sorry to keep bothering you
all. Is there a page on the FS wiki or is there a man page that
details the value of each sub-cortical parcel? I see that each masked
are has a value (1, 2, 3, etc.) but before I make assumptions about
which values correspond with which region, I though I'd ask for help.
-Joel
On Nov 13, 2007 1:09 PM, Bruce Fischl <[EMAIL PROTECTED]> wrote:
Hi Joel,
both the .m3z (nonlinear) and the .lta (linear) are transforms from the
subject to the atlas coordinate system, but all the labeling is done in
the subject space, so you should be set.
cheers,
Bruce
On Tue, 13 Nov 2007, joel bruss
wrote:
Hello-
I'm running FreeSurfer v4.01on SUSE Linux
I'm interested in viewing the sub-cortical parcels, /mri/aseg.mgz, but
in the native MRI space. I see that the output of "CA Label" produces
a file that is fit to the "CA Normalize" step but I can't figure out
the transform that was used. Specifically, for CA Normalize, if I
look under /mri/transforms, and sort by time, I have both the
talairach.lta and talairach.m3z files, but neither will get me from
native to norm space (or vice-versa). Is there a transform file that
I'm missing or is this a process of intermediate steps to get from
native to norm space? Please help!
Thanks,
Joel
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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