This is the last question that I have...sorry to keep bothering you all. Is there a page on the FS wiki or is there a man page that details the value of each sub-cortical parcel? I see that each masked are has a value (1, 2, 3, etc.) but before I make assumptions about which values correspond with which region, I though I'd ask for help.
-Joel On Nov 13, 2007 1:09 PM, Bruce Fischl <[EMAIL PROTECTED]> wrote: > Hi Joel, > > both the .m3z (nonlinear) and the .lta (linear) are transforms from the > subject to the atlas coordinate system, but all the labeling is done in > the subject space, so you should be set. > > cheers, > Bruce > On Tue, 13 Nov 2007, joel bruss > wrote: > > > > Hello- > > > > I'm running FreeSurfer v4.01on SUSE Linux > > > > I'm interested in viewing the sub-cortical parcels, /mri/aseg.mgz, but > > in the native MRI space. I see that the output of "CA Label" produces > > a file that is fit to the "CA Normalize" step but I can't figure out > > the transform that was used. Specifically, for CA Normalize, if I > > look under /mri/transforms, and sort by time, I have both the > > talairach.lta and talairach.m3z files, but neither will get me from > > native to norm space (or vice-versa). Is there a transform file that > > I'm missing or is this a process of intermediate steps to get from > > native to norm space? Please help! > > > > Thanks, > > Joel > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
