QDEC will create an output folder. In that folder, there will be a folder for each contrast. In the contrast folder, there will be a sig.mgh file. this has the -log10(p) significance values. You can convert this to nifti with mri_convert, but it will still be on the surface. If you need it in a volume, you can use mri_surf2vol doug
On 02/01/2013 09:34 AM, Franklin, Crystal G wrote: > Freesurfer, > > I ran a group comparison using qdec and got my results showing the > differences in the thickness between the groups. I want to take these > results I see in the viewer and convert them to nifti format so I can > use them in another software called MANGO. Which files do I need to > convert that shows the contrast differences? > > Thank you, > Crystal > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
