So I ran mri_surf2vol --help and I am still a little confused on what to run. Where do I actually give the sig.mgh file? All the options seem to ask for an individual subjects file.
Thanks, Crystal On 2/1/13 5:57 PM, "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> wrote: >You can run it with --help to get more info, let me know if you have >questions after that >On 02/01/2013 05:08 PM, Franklin, Crystal G wrote: >> Which options should I use when running mri_surf2vol? >> >> Crystal >> >> On 2/1/13 1:08 PM, "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> wrote: >> >>> QDEC will create an output folder. In that folder, there will be a >>> folder for each contrast. In the contrast folder, there will be a >>> sig.mgh file. this has the -log10(p) significance values. You can >>> convert this to nifti with mri_convert, but it will still be on the >>> surface. If you need it in a volume, you can use mri_surf2vol >>> doug >>> >>> On 02/01/2013 09:34 AM, Franklin, Crystal G wrote: >>>> Freesurfer, >>>> >>>> I ran a group comparison using qdec and got my results showing the >>>> differences in the thickness between the groups. I want to take these >>>> results I see in the viewer and convert them to nifti format so I can >>>> use them in another software called MANGO. Which files do I need to >>>> convert that shows the contrast differences? >>>> >>>> Thank you, >>>> Crystal >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: >>>ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom >>>it >>> is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you >>>in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >> >> > >-- >Douglas N. Greve, Ph.D. >MGH-NMR Center >gr...@nmr.mgh.harvard.edu >Phone Number: 617-724-2358 >Fax: 617-726-7422 > >Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
