You can run it with --help to get more info, let me know if you have questions after that On 02/01/2013 05:08 PM, Franklin, Crystal G wrote: > Which options should I use when running mri_surf2vol? > > Crystal > > On 2/1/13 1:08 PM, "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> wrote: > >> QDEC will create an output folder. In that folder, there will be a >> folder for each contrast. In the contrast folder, there will be a >> sig.mgh file. this has the -log10(p) significance values. You can >> convert this to nifti with mri_convert, but it will still be on the >> surface. If you need it in a volume, you can use mri_surf2vol >> doug >> >> On 02/01/2013 09:34 AM, Franklin, Crystal G wrote: >>> Freesurfer, >>> >>> I ran a group comparison using qdec and got my results showing the >>> differences in the thickness between the groups. I want to take these >>> results I see in the viewer and convert them to nifti format so I can >>> use them in another software called MANGO. Which files do I need to >>> convert that shows the contrast differences? >>> >>> Thank you, >>> Crystal >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > >
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
