Hi Anastasia, I apologize for jumping in here, but I have run bedpostx parallelized on a cluster. Are there files that we can modify to run the script in parallel? I noticed the '-prior' step is particularly long and cumbersome. Thank you!
Susie Kuo NIH On Fri, May 17, 2013 at 12:47 PM, Anastasia Yendiki < ayend...@nmr.mgh.harvard.edu> wrote: > > Hi Matt - Have you ever ran any parallelized FSL program (like bedpostx) > on your SGE cluster? Our scripts have built on the FSL scripts, adding > support for our PBS cluster, but in theory the SGE functionality is still > there, so it should be possible to make it work. Of course practice is > often somewhat more complicated than theory... > > a.y > > > On Thu, 16 May 2013, Hoptman, Matthew wrote: > > >> Hi all, >> I have access to a cluster computer. Is there any way to parallelize >> tracula >> using SGE without having to make a unique dmrirc for each subject? If I >> could >> pass subject numbers to the dmrirc that would be great, for example. >> >> Thanks, >> >> Matt >> >> >> >> Matthew J. Hoptman, PhD >> Research Scientist V >> Nathan S. Kline Institute for Psychiatric Research >> >> Research Associate Professor in Psychiatry >> NYU School of Medicine >> >> >> >> IMPORTANT NOTICE: This e-mail is meant only for the use of the intended >> recipient. >> It may contain confidential information which is legally privileged or >> otherwise >> protected by law. If you received this >> e-mail in error or from someone who was not authorized to send it to you, >> you are >> strictly prohibited from reviewing, using, disseminating, distributing or >> copying >> the e-mail. >> >> PLEASE NOTIFY US IMMEDIATELY OF THE ERROR BY RETURN E-MAIL AND DELETE >> THIS MESSAGE >> FROM YOUR SYSTEM. Thank you for your cooperation. >> >> >> >> ______________________________**______________________________** >> ______________________ >> >> Conserve Resources. Print only when necessary. >> >> IMPORTANT NOTICE: This e-mail is meant only for the use of the intended >> recipient. >> It may contain confidential information which is legally privilegedor >> otherwise >> protected by law. If you received this e-mail in error or from someone >> who is not >> authorized to send it to you, you are strictly prohibited from reviewing, >> using, >> disseminating, distributing or copying the e-mail. PLEASE NOTIFY US >> IMMEDIATELY OF >> THE ERROR BY RETURN E-MAIL AND DELETE THIS MESSAGE FROM YOUR SYSTEM. >> Thank you for >> your cooperation. >> >> IMPORTANT NOTICE: This e-mail is meant only for the use of the intended >> recipient. >> It may contain confidential information which is legally privileged or >> otherwise >> protected by law. If you received this e-mail in error or from someone >> who is not >> authorized to send it to you, you are strictly prohibited from reviewing, >> using, >> disseminating, distributing or copying the e-mail. PLEASE NOTIFY US >> IMMEDIATELY OF >> THE ERROR BY RETURN E-MAIL AND DELETE THIS MESSAGE FROM YOUR SYSTEM. >> Thank you for >> your cooperation. >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Susie Kuo Mediocrity knows nothing higher than itself, but talent instantly recognizes genius. - Sir Arthur Conan Doyle,* Sherlock Holmes- Valley of Fear*
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
