Hi Susie - The underlying script doing the job submission is called
fsl_sub_mgh (a modification of fsl_sub).
BTW, the -prior step should be about 70% less long and cumbersome in
5.2/5.3 than it was in 5.1. Which version are you running?
a.y
On Fri, 17 May 2013, Susan Kuo wrote:
Hi Anastasia,
I apologize for jumping in here, but I have run bedpostx parallelized on a
cluster. Are there files that we can modify to run the script in parallel? I
noticed the '-prior' step is particularly long and cumbersome. Thank you!
Susie Kuo
NIH
On Fri, May 17, 2013 at 12:47 PM, Anastasia Yendiki
<ayend...@nmr.mgh.harvard.edu>
wrote:
Hi Matt - Have you ever ran any parallelized FSL program (like
bedpostx) on your SGE cluster? Our scripts have built on the FSL
scripts, adding support for our PBS cluster, but in theory the SGE
functionality is still there, so it should be possible to make it
work. Of course practice is often somewhat more complicated than
theory...
a.y
On Thu, 16 May 2013, Hoptman, Matthew wrote:
Hi all,
I have access to a cluster computer. Is there any way to
parallelize tracula
using SGE without having to make a unique dmrirc for each
subject? If I could
pass subject numbers to the dmrirc that would be great, for
example.
Thanks,
Matt
Matthew J. Hoptman, PhD
Research Scientist V
Nathan S. Kline Institute for Psychiatric Research
Research Associate Professor in Psychiatry
NYU School of Medicine
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