Hi Faezeh, Please run the exact commands including the file I attached, not the aparc.annot.a2009s.ctab, and check the result using the freeview command I provided. Then let me know what label freeview shows.
hth d On Tue, Mar 1, 2016 at 1:10 PM, Faeze Vedaei <faezeved...@gmail.com> wrote: > Hi, > > Thank you for your response. I just used the command you suggested to use by > just a change in calling .ctab LUT file. I used the path: > 002_S_0413/labels/aparc.annot.a2009s.ctab because I could not work by just > calling aparc.annot.a2009s.ctab. It is strange that I created annot file for > lh.G_and_S_paracentral.label, but it shows its name in tksurfer: > G_and_S_frontomarg! I excluded the part --nhits too. So, what is your > opinion? > > Regards, > Faezeh Vedaei > > On Tue, Mar 1, 2016 at 10:57 AM, Faeze Vedaei <faezeved...@gmail.com> wrote: >> >> Hi, >> >> >> Here is the text format of those files. >> >> Regards, >> Faezeh Vedaei >> >> On Mon, Feb 29, 2016 at 5:30 PM, Faeze Vedaei <faezeved...@gmail.com> >> wrote: >>> >>> Hi >>> >>> Thank you so much for your response. I attached here three files >>> including the command lines, LUT file , and the list of names I want to get >>> and what the result is actually. I'd appreciate if you look at them and let >>> me know what is wrong with that. >>> >>> Regards, >>> Faezeh Vedaei >>> >>> On Mon, Feb 29, 2016 at 4:45 PM, Faeze Vedaei <faezeved...@gmail.com> >>> wrote: >>>> >>>> Hi, >>>> >>>> I checked again to arrange the labels in the order of LUT file, but the >>>> result has not changed. Can you help me more how I can fix this problem? >>>> Thank you so much for your time and help. >>>> >>>> Regards, >>>> Faezeh Vedaei >>>> >>>> On Mon, Feb 29, 2016 at 3:01 PM, Faeze Vedaei <faezeved...@gmail.com> >>>> wrote: >>>>> >>>>> Hi, >>>>> >>>>> Thank you for your response. Yes, you are right. The names come from >>>>> the color LUT file. But, the issue is that I chose the label files from >>>>> that >>>>> LUT file too. It meas the source that I chose the label files from and the >>>>> source of the region's names in tksurfer are the same. The problem is >>>>> just I >>>>> do not have the label's names I merged to create annot file, in the >>>>> tksurfer >>>>> GUI. It shows another names of that list! So, what do you think about? >>>>> What >>>>> is the problem? >>>>> >>>>> Regards, >>>>> Faezeh Vedaei >>>>> >>>>> On Mon, Feb 29, 2016 at 12:42 PM, Faeze Vedaei <faezeved...@gmail.com> >>>>> wrote: >>>>>> >>>>>> Hi Freesurfer experts, >>>>>> >>>>>> I have created an annotation file by several label files using >>>>>> mris_label2annot command in Freesurfer. The problem is that when I open >>>>>> this >>>>>> annot file in tksurfer and click on colored regions which corresponded to >>>>>> specific labels I had chosen them, I do not have their name on the vertex >>>>>> information part at the bottom of tksurfer GUI. It shows very different >>>>>> names for these regions. May you explains me what is the problem I could >>>>>> not >>>>>> see the exact region's name as I have them for label files? >>>>>> >>>>>> Thanks, >>>>>> Faezeh Vedaei >>>>> >>>>> >>>> >>> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
