Thank you so much for you response. I should say that I know about what you are saying. My issue is that I have these 4 columns in my LUT file. Why and how can I change the numbers (RGB values) to create new LUT?
Bests, Faezeh On Tue, Mar 1, 2016 at 5:37 PM, Faeze Vedaei <faezeved...@gmail.com> wrote: > Hi, > > Thank you so much for you descriptions. I checked out the link you just > sent me. Because I do not have many experiences working with Freesurfer, I > really could not understand about how I can do such this revising in LUT > file. Can you explain more about this? I truly appreciate your time and > help. > > Regards, > Faezeh Vedaei > > On Tue, Mar 1, 2016 at 3:49 PM, Faeze Vedaei <faezeved...@gmail.com> > wrote: > >> Hi, >> >> I really appreciate you for help me in this process. May you clarify me >> from which pattern you changed the RGB values for that region? How I can >> change the coordinates for the others? >> >> Regards, >> Faezeh Vedaei >> >> >> On Tue, Mar 1, 2016 at 2:51 PM, Faeze Vedaei <faezeved...@gmail.com> >> wrote: >> >>> Hi, >>> >>> I should let you know that, it works! It shows paracentral name in >>> tksurfer. So, how I have to revise my .ctab file to get the right result? >>> >>> Regards, >>> Faezeh Vedaei >>> >>> On Tue, Mar 1, 2016 at 1:10 PM, Faeze Vedaei <faezeved...@gmail.com> >>> wrote: >>> >>>> Hi, >>>> >>>> Thank you for your response. I just used the command you suggested to >>>> use by just a change in calling .ctab LUT file. I used the path: >>>> 002_S_0413/labels/aparc.annot.a2009s.ctab because I could not work by just >>>> calling aparc.annot.a2009s.ctab. It is strange that I created annot file >>>> for lh.G_and_S_paracentral.label, but it shows its name in tksurfer: >>>> G_and_S_frontomarg! I excluded the part --nhits too. So, what is your >>>> opinion? >>>> >>>> Regards, >>>> Faezeh Vedaei >>>> >>>> On Tue, Mar 1, 2016 at 10:57 AM, Faeze Vedaei <faezeved...@gmail.com> >>>> wrote: >>>> >>>>> Hi, >>>>> >>>>> >>>>> Here is the text format of those files. >>>>> >>>>> Regards, >>>>> Faezeh Vedaei >>>>> >>>>> On Mon, Feb 29, 2016 at 5:30 PM, Faeze Vedaei <faezeved...@gmail.com> >>>>> wrote: >>>>> >>>>>> Hi >>>>>> >>>>>> Thank you so much for your response. I attached here three files >>>>>> including the command lines, LUT file , and the list of names I want to >>>>>> get >>>>>> and what the result is actually. I'd appreciate if you look at them and >>>>>> let >>>>>> me know what is wrong with that. >>>>>> >>>>>> Regards, >>>>>> Faezeh Vedaei >>>>>> >>>>>> On Mon, Feb 29, 2016 at 4:45 PM, Faeze Vedaei <faezeved...@gmail.com> >>>>>> wrote: >>>>>> >>>>>>> Hi, >>>>>>> >>>>>>> I checked again to arrange the labels in the order of LUT file, but >>>>>>> the result has not changed. Can you help me more how I can fix this >>>>>>> problem? Thank you so much for your time and help. >>>>>>> >>>>>>> Regards, >>>>>>> Faezeh Vedaei >>>>>>> >>>>>>> On Mon, Feb 29, 2016 at 3:01 PM, Faeze Vedaei <faezeved...@gmail.com >>>>>>> > wrote: >>>>>>> >>>>>>>> Hi, >>>>>>>> >>>>>>>> Thank you for your response. Yes, you are right. The names come >>>>>>>> from the color LUT file. But, the issue is that I chose the label files >>>>>>>> from that LUT file too. It meas the source that I chose the label files >>>>>>>> from and the source of the region's names in tksurfer are the same. The >>>>>>>> problem is just I do not have the label's names I merged to create >>>>>>>> annot >>>>>>>> file, in the tksurfer GUI. It shows another names of that list! So, >>>>>>>> what do >>>>>>>> you think about? What is the problem? >>>>>>>> >>>>>>>> Regards, >>>>>>>> Faezeh Vedaei >>>>>>>> >>>>>>>> On Mon, Feb 29, 2016 at 12:42 PM, Faeze Vedaei < >>>>>>>> faezeved...@gmail.com> wrote: >>>>>>>> >>>>>>>>> Hi Freesurfer experts, >>>>>>>>> >>>>>>>>> I have created an annotation file by several label files using >>>>>>>>> mris_label2annot command in Freesurfer. The problem is that when I >>>>>>>>> open >>>>>>>>> this annot file in tksurfer and click on colored regions which >>>>>>>>> corresponded >>>>>>>>> to specific labels I had chosen them, I do not have their name on the >>>>>>>>> vertex information part at the bottom of tksurfer GUI. It shows very >>>>>>>>> different names for these regions. May you explains me what is the >>>>>>>>> problem >>>>>>>>> I could not see the exact region's name as I have them for label >>>>>>>>> files? >>>>>>>>> >>>>>>>>> Thanks, >>>>>>>>> Faezeh Vedaei >>>>>>>>> >>>>>>>> >>>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >> >
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