Hi, Thank you so much for you descriptions. I checked out the link you just sent me. Because I do not have many experiences working with Freesurfer, I really could not understand about how I can do such this revising in LUT file. Can you explain more about this? I truly appreciate your time and help.
Regards, Faezeh Vedaei On Tue, Mar 1, 2016 at 3:49 PM, Faeze Vedaei <faezeved...@gmail.com> wrote: > Hi, > > I really appreciate you for help me in this process. May you clarify me > from which pattern you changed the RGB values for that region? How I can > change the coordinates for the others? > > Regards, > Faezeh Vedaei > > > On Tue, Mar 1, 2016 at 2:51 PM, Faeze Vedaei <faezeved...@gmail.com> > wrote: > >> Hi, >> >> I should let you know that, it works! It shows paracentral name in >> tksurfer. So, how I have to revise my .ctab file to get the right result? >> >> Regards, >> Faezeh Vedaei >> >> On Tue, Mar 1, 2016 at 1:10 PM, Faeze Vedaei <faezeved...@gmail.com> >> wrote: >> >>> Hi, >>> >>> Thank you for your response. I just used the command you suggested to >>> use by just a change in calling .ctab LUT file. I used the path: >>> 002_S_0413/labels/aparc.annot.a2009s.ctab because I could not work by just >>> calling aparc.annot.a2009s.ctab. It is strange that I created annot file >>> for lh.G_and_S_paracentral.label, but it shows its name in tksurfer: >>> G_and_S_frontomarg! I excluded the part --nhits too. So, what is your >>> opinion? >>> >>> Regards, >>> Faezeh Vedaei >>> >>> On Tue, Mar 1, 2016 at 10:57 AM, Faeze Vedaei <faezeved...@gmail.com> >>> wrote: >>> >>>> Hi, >>>> >>>> >>>> Here is the text format of those files. >>>> >>>> Regards, >>>> Faezeh Vedaei >>>> >>>> On Mon, Feb 29, 2016 at 5:30 PM, Faeze Vedaei <faezeved...@gmail.com> >>>> wrote: >>>> >>>>> Hi >>>>> >>>>> Thank you so much for your response. I attached here three files >>>>> including the command lines, LUT file , and the list of names I want to >>>>> get >>>>> and what the result is actually. I'd appreciate if you look at them and >>>>> let >>>>> me know what is wrong with that. >>>>> >>>>> Regards, >>>>> Faezeh Vedaei >>>>> >>>>> On Mon, Feb 29, 2016 at 4:45 PM, Faeze Vedaei <faezeved...@gmail.com> >>>>> wrote: >>>>> >>>>>> Hi, >>>>>> >>>>>> I checked again to arrange the labels in the order of LUT file, but >>>>>> the result has not changed. Can you help me more how I can fix this >>>>>> problem? Thank you so much for your time and help. >>>>>> >>>>>> Regards, >>>>>> Faezeh Vedaei >>>>>> >>>>>> On Mon, Feb 29, 2016 at 3:01 PM, Faeze Vedaei <faezeved...@gmail.com> >>>>>> wrote: >>>>>> >>>>>>> Hi, >>>>>>> >>>>>>> Thank you for your response. Yes, you are right. The names come from >>>>>>> the color LUT file. But, the issue is that I chose the label files from >>>>>>> that LUT file too. It meas the source that I chose the label files from >>>>>>> and >>>>>>> the source of the region's names in tksurfer are the same. The problem >>>>>>> is >>>>>>> just I do not have the label's names I merged to create annot file, in >>>>>>> the >>>>>>> tksurfer GUI. It shows another names of that list! So, what do you think >>>>>>> about? What is the problem? >>>>>>> >>>>>>> Regards, >>>>>>> Faezeh Vedaei >>>>>>> >>>>>>> On Mon, Feb 29, 2016 at 12:42 PM, Faeze Vedaei < >>>>>>> faezeved...@gmail.com> wrote: >>>>>>> >>>>>>>> Hi Freesurfer experts, >>>>>>>> >>>>>>>> I have created an annotation file by several label files using >>>>>>>> mris_label2annot command in Freesurfer. The problem is that when I open >>>>>>>> this annot file in tksurfer and click on colored regions which >>>>>>>> corresponded >>>>>>>> to specific labels I had chosen them, I do not have their name on the >>>>>>>> vertex information part at the bottom of tksurfer GUI. It shows very >>>>>>>> different names for these regions. May you explains me what is the >>>>>>>> problem >>>>>>>> I could not see the exact region's name as I have them for label files? >>>>>>>> >>>>>>>> Thanks, >>>>>>>> Faezeh Vedaei >>>>>>>> >>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >> >
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