Thank you for your response. It is better to explain my question that the coordinates for paracentral in .ctab file is '63 100 60', that you changed these to '23 230 60' in your new version. My question is that how you applied such this change on the RBG values for this region?
Regards, Faezeh On Tue, Mar 1, 2016 at 5:55 PM, Faeze Vedaei <faezeved...@gmail.com> wrote: > Thank you so much for you response. I should say that I know about what > you are saying. My issue is that I have these 4 columns in my LUT file. Why > and how can I change the numbers (RGB values) to create new LUT? > > Bests, > Faezeh > > On Tue, Mar 1, 2016 at 5:37 PM, Faeze Vedaei <faezeved...@gmail.com> > wrote: > >> Hi, >> >> Thank you so much for you descriptions. I checked out the link you just >> sent me. Because I do not have many experiences working with Freesurfer, I >> really could not understand about how I can do such this revising in LUT >> file. Can you explain more about this? I truly appreciate your time and >> help. >> >> Regards, >> Faezeh Vedaei >> >> On Tue, Mar 1, 2016 at 3:49 PM, Faeze Vedaei <faezeved...@gmail.com> >> wrote: >> >>> Hi, >>> >>> I really appreciate you for help me in this process. May you clarify me >>> from which pattern you changed the RGB values for that region? How I can >>> change the coordinates for the others? >>> >>> Regards, >>> Faezeh Vedaei >>> >>> >>> On Tue, Mar 1, 2016 at 2:51 PM, Faeze Vedaei <faezeved...@gmail.com> >>> wrote: >>> >>>> Hi, >>>> >>>> I should let you know that, it works! It shows paracentral name in >>>> tksurfer. So, how I have to revise my .ctab file to get the right result? >>>> >>>> Regards, >>>> Faezeh Vedaei >>>> >>>> On Tue, Mar 1, 2016 at 1:10 PM, Faeze Vedaei <faezeved...@gmail.com> >>>> wrote: >>>> >>>>> Hi, >>>>> >>>>> Thank you for your response. I just used the command you suggested to >>>>> use by just a change in calling .ctab LUT file. I used the path: >>>>> 002_S_0413/labels/aparc.annot.a2009s.ctab because I could not work by just >>>>> calling aparc.annot.a2009s.ctab. It is strange that I created annot file >>>>> for lh.G_and_S_paracentral.label, but it shows its name in tksurfer: >>>>> G_and_S_frontomarg! I excluded the part --nhits too. So, what is your >>>>> opinion? >>>>> >>>>> Regards, >>>>> Faezeh Vedaei >>>>> >>>>> On Tue, Mar 1, 2016 at 10:57 AM, Faeze Vedaei <faezeved...@gmail.com> >>>>> wrote: >>>>> >>>>>> Hi, >>>>>> >>>>>> >>>>>> Here is the text format of those files. >>>>>> >>>>>> Regards, >>>>>> Faezeh Vedaei >>>>>> >>>>>> On Mon, Feb 29, 2016 at 5:30 PM, Faeze Vedaei <faezeved...@gmail.com> >>>>>> wrote: >>>>>> >>>>>>> Hi >>>>>>> >>>>>>> Thank you so much for your response. I attached here three files >>>>>>> including the command lines, LUT file , and the list of names I want to >>>>>>> get >>>>>>> and what the result is actually. I'd appreciate if you look at them and >>>>>>> let >>>>>>> me know what is wrong with that. >>>>>>> >>>>>>> Regards, >>>>>>> Faezeh Vedaei >>>>>>> >>>>>>> On Mon, Feb 29, 2016 at 4:45 PM, Faeze Vedaei <faezeved...@gmail.com >>>>>>> > wrote: >>>>>>> >>>>>>>> Hi, >>>>>>>> >>>>>>>> I checked again to arrange the labels in the order of LUT file, but >>>>>>>> the result has not changed. Can you help me more how I can fix this >>>>>>>> problem? Thank you so much for your time and help. >>>>>>>> >>>>>>>> Regards, >>>>>>>> Faezeh Vedaei >>>>>>>> >>>>>>>> On Mon, Feb 29, 2016 at 3:01 PM, Faeze Vedaei < >>>>>>>> faezeved...@gmail.com> wrote: >>>>>>>> >>>>>>>>> Hi, >>>>>>>>> >>>>>>>>> Thank you for your response. Yes, you are right. The names come >>>>>>>>> from the color LUT file. But, the issue is that I chose the label >>>>>>>>> files >>>>>>>>> from that LUT file too. It meas the source that I chose the label >>>>>>>>> files >>>>>>>>> from and the source of the region's names in tksurfer are the same. >>>>>>>>> The >>>>>>>>> problem is just I do not have the label's names I merged to create >>>>>>>>> annot >>>>>>>>> file, in the tksurfer GUI. It shows another names of that list! So, >>>>>>>>> what do >>>>>>>>> you think about? What is the problem? >>>>>>>>> >>>>>>>>> Regards, >>>>>>>>> Faezeh Vedaei >>>>>>>>> >>>>>>>>> On Mon, Feb 29, 2016 at 12:42 PM, Faeze Vedaei < >>>>>>>>> faezeved...@gmail.com> wrote: >>>>>>>>> >>>>>>>>>> Hi Freesurfer experts, >>>>>>>>>> >>>>>>>>>> I have created an annotation file by several label files using >>>>>>>>>> mris_label2annot command in Freesurfer. The problem is that when I >>>>>>>>>> open >>>>>>>>>> this annot file in tksurfer and click on colored regions which >>>>>>>>>> corresponded >>>>>>>>>> to specific labels I had chosen them, I do not have their name on the >>>>>>>>>> vertex information part at the bottom of tksurfer GUI. It shows very >>>>>>>>>> different names for these regions. May you explains me what is the >>>>>>>>>> problem >>>>>>>>>> I could not see the exact region's name as I have them for label >>>>>>>>>> files? >>>>>>>>>> >>>>>>>>>> Thanks, >>>>>>>>>> Faezeh Vedaei >>>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >> >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
