It is just a text file (you can open it with vi or gedit whatever), just add new lines for new labels and make the colors the color you want them to be.\
hth d On Tue, Mar 1, 2016 at 5:55 PM, Faeze Vedaei <faezeved...@gmail.com> wrote: > Thank you so much for you response. I should say that I know about what you > are saying. My issue is that I have these 4 columns in my LUT file. Why and > how can I change the numbers (RGB values) to create new LUT? > > Bests, > Faezeh > > On Tue, Mar 1, 2016 at 5:37 PM, Faeze Vedaei <faezeved...@gmail.com> wrote: >> >> Hi, >> >> Thank you so much for you descriptions. I checked out the link you just >> sent me. Because I do not have many experiences working with Freesurfer, I >> really could not understand about how I can do such this revising in LUT >> file. Can you explain more about this? I truly appreciate your time and >> help. >> >> Regards, >> Faezeh Vedaei >> >> On Tue, Mar 1, 2016 at 3:49 PM, Faeze Vedaei <faezeved...@gmail.com> >> wrote: >>> >>> Hi, >>> >>> I really appreciate you for help me in this process. May you clarify me >>> from which pattern you changed the RGB values for that region? How I can >>> change the coordinates for the others? >>> >>> Regards, >>> Faezeh Vedaei >>> >>> >>> On Tue, Mar 1, 2016 at 2:51 PM, Faeze Vedaei <faezeved...@gmail.com> >>> wrote: >>>> >>>> Hi, >>>> >>>> I should let you know that, it works! It shows paracentral name in >>>> tksurfer. So, how I have to revise my .ctab file to get the right result? >>>> >>>> Regards, >>>> Faezeh Vedaei >>>> >>>> On Tue, Mar 1, 2016 at 1:10 PM, Faeze Vedaei <faezeved...@gmail.com> >>>> wrote: >>>>> >>>>> Hi, >>>>> >>>>> Thank you for your response. I just used the command you suggested to >>>>> use by just a change in calling .ctab LUT file. I used the path: >>>>> 002_S_0413/labels/aparc.annot.a2009s.ctab because I could not work by just >>>>> calling aparc.annot.a2009s.ctab. It is strange that I created annot file >>>>> for >>>>> lh.G_and_S_paracentral.label, but it shows its name in tksurfer: >>>>> G_and_S_frontomarg! I excluded the part --nhits too. So, what is your >>>>> opinion? >>>>> >>>>> Regards, >>>>> Faezeh Vedaei >>>>> >>>>> On Tue, Mar 1, 2016 at 10:57 AM, Faeze Vedaei <faezeved...@gmail.com> >>>>> wrote: >>>>>> >>>>>> Hi, >>>>>> >>>>>> >>>>>> Here is the text format of those files. >>>>>> >>>>>> Regards, >>>>>> Faezeh Vedaei >>>>>> >>>>>> On Mon, Feb 29, 2016 at 5:30 PM, Faeze Vedaei <faezeved...@gmail.com> >>>>>> wrote: >>>>>>> >>>>>>> Hi >>>>>>> >>>>>>> Thank you so much for your response. I attached here three files >>>>>>> including the command lines, LUT file , and the list of names I want to >>>>>>> get >>>>>>> and what the result is actually. I'd appreciate if you look at them and >>>>>>> let >>>>>>> me know what is wrong with that. >>>>>>> >>>>>>> Regards, >>>>>>> Faezeh Vedaei >>>>>>> >>>>>>> On Mon, Feb 29, 2016 at 4:45 PM, Faeze Vedaei <faezeved...@gmail.com> >>>>>>> wrote: >>>>>>>> >>>>>>>> Hi, >>>>>>>> >>>>>>>> I checked again to arrange the labels in the order of LUT file, but >>>>>>>> the result has not changed. Can you help me more how I can fix this >>>>>>>> problem? >>>>>>>> Thank you so much for your time and help. >>>>>>>> >>>>>>>> Regards, >>>>>>>> Faezeh Vedaei >>>>>>>> >>>>>>>> On Mon, Feb 29, 2016 at 3:01 PM, Faeze Vedaei >>>>>>>> <faezeved...@gmail.com> wrote: >>>>>>>>> >>>>>>>>> Hi, >>>>>>>>> >>>>>>>>> Thank you for your response. Yes, you are right. The names come >>>>>>>>> from the color LUT file. But, the issue is that I chose the label >>>>>>>>> files from >>>>>>>>> that LUT file too. It meas the source that I chose the label files >>>>>>>>> from and >>>>>>>>> the source of the region's names in tksurfer are the same. The >>>>>>>>> problem is >>>>>>>>> just I do not have the label's names I merged to create annot file, >>>>>>>>> in the >>>>>>>>> tksurfer GUI. It shows another names of that list! So, what do you >>>>>>>>> think >>>>>>>>> about? What is the problem? >>>>>>>>> >>>>>>>>> Regards, >>>>>>>>> Faezeh Vedaei >>>>>>>>> >>>>>>>>> On Mon, Feb 29, 2016 at 12:42 PM, Faeze Vedaei >>>>>>>>> <faezeved...@gmail.com> wrote: >>>>>>>>>> >>>>>>>>>> Hi Freesurfer experts, >>>>>>>>>> >>>>>>>>>> I have created an annotation file by several label files using >>>>>>>>>> mris_label2annot command in Freesurfer. The problem is that when I >>>>>>>>>> open this >>>>>>>>>> annot file in tksurfer and click on colored regions which >>>>>>>>>> corresponded to >>>>>>>>>> specific labels I had chosen them, I do not have their name on the >>>>>>>>>> vertex >>>>>>>>>> information part at the bottom of tksurfer GUI. It shows very >>>>>>>>>> different >>>>>>>>>> names for these regions. May you explains me what is the problem I >>>>>>>>>> could not >>>>>>>>>> see the exact region's name as I have them for label files? >>>>>>>>>> >>>>>>>>>> Thanks, >>>>>>>>>> Faezeh Vedaei >>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
