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Dear Freesurfer Experts,
I really need your attention and help. Thanks a lot.
We want to create label through the mri_glm-fit-sim cluster results.
We have found the same topic in 2013 and tried the method you have provided.
However, it doesn’t work. If you think it is not the right way, could you give
me an example to do it right. I really appreciate your great help. Thanks a lot.
Here is my code:
mri_annotation2label --subject F999 --hemi lh --annotation
cache.th20.neg.sig.ocn.annot --labelbase lh.test_label
Here is my error information:
subject = F999
annotation = cache.th20.neg.sig.ocn.annot
hemi = lh
labelbase = lh.test_label
surface = white
Reading surface
/media/set2iscsi/ting/origin_gz_data/F999/surf/lh.white
Loading annotations from
/media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot
could not read annot file
/media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot
No such file or directory
INFO: could not load from
/media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot,
trying
/media/set2iscsi/ting/origin_gz_data/F999/label/lh_cache.th20.neg.sig.ocn.annot.annot
could not read annot file
/media/set2iscsi/ting/origin_gz_data/F999/label/lh_cache.th20.neg.sig.ocn.annot.annot
No such file or directory
ERROR: MRISreadAnnotation() failed
This is the annot files in my directory F999:
ls F999/label/*.annot
F999/label/cache.th20.neg.sig.ocn.annot F999/label/lh.BA_exvivo.annot
F999/label/rh.aparc.DKTatlas.annot
F999/label/lh.aparc.a2009s.annot F999/label/lh.BA_exvivo.thresh.annot
F999/label/rh.BA_exvivo.annot
F999/label/lh.aparc.annot F999/label/rh.aparc.a2009s.annot
F999/label/rh.BA_exvivo.thresh.annot
F999/label/lh.aparc.DKTatlas.annot F999/label/rh.aparc.annot
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