Which subject did you load it on? It must be fsaverage. Can you send the terminal output and command line?
On 10/03/2018 11:31 PM, Ting Li wrote: > > External Email - Use Caution > > Dear Freesurfer Expert, > > I have figured out the problem is that I didn’t specify lh before the > annot file. However, in this method, I didn’t get the right label for > I have loaded the label into the subject file. It is the scatter points. > > I want to create label through mri_glm-fit-sim clusters. What command > I should use? Please specify it for me. Thanks a lot! > > Your help means a lot. > > Regards, > Ting >> On Oct 3, 2018, at 9:38 PM, Ting Li <tx...@ualr.edu >> <mailto:tx...@ualr.edu>> wrote: >> >> I have also tried the command without annot in specifying the >> annotation file. Thanks a lot. >> >> Regards, >> >> Ting >>> On Oct 3, 2018, at 9:36 PM, Ting Li <tx...@ualr.edu >>> <mailto:tx...@ualr.edu>> wrote: >>> >>> Dear Freesurfer Experts, >>> >>> I really need your attention and help. Thanks a lot. >>> >>> We want to create label through the mri_glm-fit-sim cluster results. >>> >>> We have found the same topic in 2013 and tried the method you have >>> provided. However, it doesn’t work. If you think it is not the right >>> way, could you give me an example to do it right. I really >>> appreciate your great help. Thanks a lot. >>> >>> Here is my code: >>> >>> mri_annotation2label --subject F999 --hemi lh --annotation >>> cache.th20.neg.sig.ocn.annot --labelbase lh.test_label >>> >>> Here is my error information: >>> subject = F999 >>> annotation = cache.th20.neg.sig.ocn.annot >>> hemi = lh >>> labelbase = lh.test_label >>> surface = white >>> >>> Reading surface >>> /media/set2iscsi/ting/origin_gz_data/F999/surf/lh.white >>> Loading annotations from >>> /media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot >>> could not read annot file >>> /media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot >>> No such file or directory >>> INFO: could not load from >>> /media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot, >>> >>> trying >>> /media/set2iscsi/ting/origin_gz_data/F999/label/lh_cache.th20.neg.sig.ocn.annot.annot >>> could not read annot file >>> /media/set2iscsi/ting/origin_gz_data/F999/label/lh_cache.th20.neg.sig.ocn.annot.annot >>> No such file or directory >>> ERROR: MRISreadAnnotation() failed >>> >>> This is the annot files in my directory F999: >>> ls F999/label/*.annot >>> F999/label/cache.th20.neg.sig.ocn.annot >>> F999/label/lh.BA_exvivo.annot F999/label/rh.aparc.DKTatlas.annot >>> F999/label/lh.aparc.a2009s.annot >>> F999/label/lh.BA_exvivo.thresh.annot F999/label/rh.BA_exvivo.annot >>> F999/label/lh.aparc.annot F999/label/rh.aparc.a2009s.annot >>> F999/label/rh.BA_exvivo.thresh.annot >>> F999/label/lh.aparc.DKTatlas.annot F999/label/rh.aparc.annot >> > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
