External Email - Use Caution Dear Freesurfer Expert,
I have figured out the problem is that I didn’t specify lh before the annot file. However, in this method, I didn’t get the right label for I have loaded the label into the subject file. It is the scatter points. I want to create label through mri_glm-fit-sim clusters. What command I should use? Please specify it for me. Thanks a lot! Your help means a lot. Regards, Ting > On Oct 3, 2018, at 9:38 PM, Ting Li <tx...@ualr.edu> wrote: > > I have also tried the command without annot in specifying the annotation > file. Thanks a lot. > > Regards, > > Ting >> On Oct 3, 2018, at 9:36 PM, Ting Li <tx...@ualr.edu <mailto:tx...@ualr.edu>> >> wrote: >> >> Dear Freesurfer Experts, >> >> I really need your attention and help. Thanks a lot. >> >> We want to create label through the mri_glm-fit-sim cluster results. >> >> We have found the same topic in 2013 and tried the method you have provided. >> However, it doesn’t work. If you think it is not the right way, could you >> give me an example to do it right. I really appreciate your great help. >> Thanks a lot. >> >> Here is my code: >> >> mri_annotation2label --subject F999 --hemi lh --annotation >> cache.th20.neg.sig.ocn.annot --labelbase lh.test_label >> >> Here is my error information: >> subject = F999 >> annotation = cache.th20.neg.sig.ocn.annot >> hemi = lh >> labelbase = lh.test_label >> surface = white >> >> Reading surface >> /media/set2iscsi/ting/origin_gz_data/F999/surf/lh.white >> Loading annotations from >> /media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot >> could not read annot file >> /media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot >> No such file or directory >> INFO: could not load from >> /media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot, >> trying >> /media/set2iscsi/ting/origin_gz_data/F999/label/lh_cache.th20.neg.sig.ocn.annot.annot >> could not read annot file >> /media/set2iscsi/ting/origin_gz_data/F999/label/lh_cache.th20.neg.sig.ocn.annot.annot >> No such file or directory >> ERROR: MRISreadAnnotation() failed >> >> This is the annot files in my directory F999: >> ls F999/label/*.annot >> F999/label/cache.th20.neg.sig.ocn.annot F999/label/lh.BA_exvivo.annot >> F999/label/rh.aparc.DKTatlas.annot >> F999/label/lh.aparc.a2009s.annot >> F999/label/lh.BA_exvivo.thresh.annot F999/label/rh.BA_exvivo.annot >> F999/label/lh.aparc.annot F999/label/rh.aparc.a2009s.annot >> F999/label/rh.BA_exvivo.thresh.annot >> F999/label/lh.aparc.DKTatlas.annot F999/label/rh.aparc.annot >
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