External Email - Use Caution I have also tried the command without annot in specifying the annotation file. Thanks a lot.
Regards, Ting > On Oct 3, 2018, at 9:36 PM, Ting Li <tx...@ualr.edu> wrote: > > Dear Freesurfer Experts, > > I really need your attention and help. Thanks a lot. > > We want to create label through the mri_glm-fit-sim cluster results. > > We have found the same topic in 2013 and tried the method you have provided. > However, it doesn’t work. If you think it is not the right way, could you > give me an example to do it right. I really appreciate your great help. > Thanks a lot. > > Here is my code: > > mri_annotation2label --subject F999 --hemi lh --annotation > cache.th20.neg.sig.ocn.annot --labelbase lh.test_label > > Here is my error information: > subject = F999 > annotation = cache.th20.neg.sig.ocn.annot > hemi = lh > labelbase = lh.test_label > surface = white > > Reading surface > /media/set2iscsi/ting/origin_gz_data/F999/surf/lh.white > Loading annotations from > /media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot > could not read annot file > /media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot > No such file or directory > INFO: could not load from > /media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot, > trying > /media/set2iscsi/ting/origin_gz_data/F999/label/lh_cache.th20.neg.sig.ocn.annot.annot > could not read annot file > /media/set2iscsi/ting/origin_gz_data/F999/label/lh_cache.th20.neg.sig.ocn.annot.annot > No such file or directory > ERROR: MRISreadAnnotation() failed > > This is the annot files in my directory F999: > ls F999/label/*.annot > F999/label/cache.th20.neg.sig.ocn.annot F999/label/lh.BA_exvivo.annot > F999/label/rh.aparc.DKTatlas.annot > F999/label/lh.aparc.a2009s.annot F999/label/lh.BA_exvivo.thresh.annot > F999/label/rh.BA_exvivo.annot > F999/label/lh.aparc.annot F999/label/rh.aparc.a2009s.annot > F999/label/rh.BA_exvivo.thresh.annot > F999/label/lh.aparc.DKTatlas.annot F999/label/rh.aparc.annot
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