yes, that is fine
On 10/11/18 11:21 PM, Ting Li wrote:
External Email - Use Caution
Dear Dr. Douglas,
Thank you so much for your response. With your instruction, it works. This is
how I did.
First, copy the significant cluster annot file from the simulation fold to one
of subject label folder.
Secondly, use the mir_annotation2label command to make this cluster into a
label file
Thirdly, copy this label file to fsaverage label folder
Finally, I can load the label to the fsaverage surf.
Is this the right procedure? Thanks a lot!
Regards,
Ting
On Oct 10, 2018, at 1:30 PM, Greve, Douglas N.,Ph.D.
<dgr...@mgh.harvard.edu<mailto:dgr...@mgh.harvard.edu>> wrote:
Which subject did you load it on? It must be fsaverage. Can you send the
terminal output and command line?
On 10/03/2018 11:31 PM, Ting Li wrote:
External Email - Use Caution
Dear Freesurfer Expert,
I have figured out the problem is that I didn’t specify lh before the
annot file. However, in this method, I didn’t get the right label for
I have loaded the label into the subject file. It is the scatter points.
I want to create label through mri_glm-fit-sim clusters. What command
I should use? Please specify it for me. Thanks a lot!
Your help means a lot.
Regards,
Ting
On Oct 3, 2018, at 9:38 PM, Ting Li <tx...@ualr.edu<mailto:tx...@ualr.edu>
<mailto:tx...@ualr.edu>> wrote:
I have also tried the command without annot in specifying the
annotation file. Thanks a lot.
Regards,
Ting
On Oct 3, 2018, at 9:36 PM, Ting Li <tx...@ualr.edu<mailto:tx...@ualr.edu>
<mailto:tx...@ualr.edu>> wrote:
Dear Freesurfer Experts,
I really need your attention and help. Thanks a lot.
We want to create label through the mri_glm-fit-sim cluster results.
We have found the same topic in 2013 and tried the method you have
provided. However, it doesn’t work. If you think it is not the right
way, could you give me an example to do it right. I really
appreciate your great help. Thanks a lot.
Here is my code:
mri_annotation2label --subject F999 --hemi lh --annotation
cache.th20.neg.sig.ocn.annot --labelbase lh.test_label
Here is my error information:
subject = F999
annotation = cache.th20.neg.sig.ocn.annot
hemi = lh
labelbase = lh.test_label
surface = white
Reading surface
/media/set2iscsi/ting/origin_gz_data/F999/surf/lh.white
Loading annotations from
/media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot
could not read annot file
/media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot
No such file or directory
INFO: could not load from
/media/set2iscsi/ting/origin_gz_data/F999/label/lh.cache.th20.neg.sig.ocn.annot.annot,
trying
/media/set2iscsi/ting/origin_gz_data/F999/label/lh_cache.th20.neg.sig.ocn.annot.annot
could not read annot file
/media/set2iscsi/ting/origin_gz_data/F999/label/lh_cache.th20.neg.sig.ocn.annot.annot
No such file or directory
ERROR: MRISreadAnnotation() failed
This is the annot files in my directory F999:
ls F999/label/*.annot
F999/label/cache.th20.neg.sig.ocn.annot
F999/label/lh.BA_exvivo.annot F999/label/rh.aparc.DKTatlas.annot
F999/label/lh.aparc.a2009s.annot
F999/label/lh.BA_exvivo.thresh.annot F999/label/rh.BA_exvivo.annot
F999/label/lh.aparc.annot F999/label/rh.aparc.a2009s.annot
F999/label/rh.BA_exvivo.thresh.annot
F999/label/lh.aparc.DKTatlas.annot F999/label/rh.aparc.annot
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