r-sig-phylo  

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• • Re: [R-sig-phylo] "Not of class phylo" error when lapply is used jschenk
  • Re: [R-sig-phylo] "Not of class phylo" error when lapply is used Jacob Berv
  • Re: [R-sig-phylo] "Not of class phylo" error when lapply is used jschenk
  • Re: [R-sig-phylo] "Not of class phylo" error when lapply is used Emmanuel Paradis
• [R-sig-phylo] quantitative state dependent diversification of another quantitative trait (Zach Culumber) krzysztofbartoszek
• [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Rafael S Marcondes
  • Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models William Gearty
  • Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Rafael S Marcondes
  • Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Jacob Berv
  • Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Brian O'Meara
  • Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Brian O'Meara
  • Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Marguerite Butler
  • Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Masahito Tsuboi
  • Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Liam J. Revell
• [R-sig-phylo] quantitative state dependent diversification of another quantitative trait Zach Culumber
  • Re: [R-sig-phylo] quantitative state dependent diversification of another quantitative trait Brian O'Meara
  • Re: [R-sig-phylo] quantitative state dependent diversification of another quantitative trait Julien Clavel
  • Re: [R-sig-phylo] quantitative state dependent diversification of another quantitative trait Zach Culumber
• Re: [R-sig-phylo] Detection association between traits Joe Felsenstein
• [R-sig-phylo] correlation of binary and multistate John Denton
  • Re: [R-sig-phylo] correlation of binary and multistate Brian O'Meara
  • Re: [R-sig-phylo] correlation of binary and multistate Arbuckle Kevin .
• [R-sig-phylo] Help for QuaSSE analysis (diversitree) Charles Pouchon
• [R-sig-phylo] Plot interactions which are fitted by PGLS models. Long, X.
• [R-sig-phylo] correlation of characters from stochastic maps John Denton
• [R-sig-phylo] plot.cophylo: some edges missing Juan Antonio Balbuena
  • Re: [R-sig-phylo] plot.cophylo: some edges missing Liam J. Revell
  • Re: [R-sig-phylo] plot.cophylo: some edges missing Juan Antonio Balbuena
  • Re: [R-sig-phylo] plot.cophylo: some edges missing Liam J. Revell
  • Re: [R-sig-phylo] plot.cophylo: some edges missing Juan Antonio Balbuena
• [R-sig-phylo] Phylogenetic PCA and measurement error Rafael S Marcondes
  • Re: [R-sig-phylo] Phylogenetic PCA and measurement error Liam J. Revell
  • Re: [R-sig-phylo] Phylogenetic PCA and measurement error Joe Felsenstein
  • Re: [R-sig-phylo] Phylogenetic PCA and measurement error Graham Slater
  • Re: [R-sig-phylo] Phylogenetic PCA and measurement error Liam J. Revell
  • Re: [R-sig-phylo] Phylogenetic PCA and measurement error Rafael S Marcondes
• [R-sig-phylo] Some questions about PGLS analysis in 'caper' in R Long, X.
• [R-sig-phylo] problem matching data and tip.labels Bianca A Santini Gonzalez
• [R-sig-phylo] problem with phylo.toBackbone Felipe Rossetto
  • Re: [R-sig-phylo] problem with phylo.toBackbone Liam J. Revell
  • Re: [R-sig-phylo] problem with phylo.toBackbone Liam J. Revell
• [R-sig-phylo] Spider 1.5.0 released Rupert Collins
• [R-sig-phylo] Suggestion for update of as.igraph.phylo Watal M. Iwasaki
  • Re: [R-sig-phylo] Suggestion for update of as.igraph.phylo Emmanuel Paradis
  • Re: [R-sig-phylo] Suggestion for update of as.igraph.phylo Watal M. Iwasaki
• [R-sig-phylo] Mean of Phenogram Through Time William Gearty
  • Re: [R-sig-phylo] Mean of Phenogram Through Time William Gearty
  • Re: [R-sig-phylo] Mean of Phenogram Through Time William Gearty
• [R-sig-phylo] importing trees from birdtree.org into R Agus Camacho
  • Re: [R-sig-phylo] importing trees from birdtree.org into R Klaus Schliep
  • Re: [R-sig-phylo] importing trees from birdtree.org into R Agus Camacho
  • Re: [R-sig-phylo] importing trees from birdtree.org into R Upham, Nathan
  • Re: [R-sig-phylo] importing trees from birdtree.org into R Agus Camacho
• Re: [R-sig-phylo] R-sig-phylo Digest, Vol 121, Issue 2 Matthews, Luke
  • Re: [R-sig-phylo] R-sig-phylo Digest, Vol 121, Issue 2 Eduardo Ascarrunz
  • Re: [R-sig-phylo] R-sig-phylo Digest, Vol 121, Issue 2 Martin Smith
• [R-sig-phylo] Not inferring homology within "absence" state in phylogenetic analysis Roland Sookias
• [R-sig-phylo] Maximum likelihood time-scaling Santiago Claramunt
  • Re: [R-sig-phylo] Maximum likelihood time-scaling Emmanuel Paradis
• [R-sig-phylo] error with QuaSSE linear function for simulations Elizabeth Christina Miller
• [R-sig-phylo] Specifying a polytomy at the root with no outgroup Yan Wong
  • Re: [R-sig-phylo] Specifying a polytomy at the root with no outgroup Emmanuel Paradis
  • Re: [R-sig-phylo] Specifying a polytomy at the root with no outgroup Yan Wong
• [R-sig-phylo] ML tree search using continuous characters William Gelnaw
• [R-sig-phylo] rayDISC model not running in corHMM Arbuckle Kevin .
• [R-sig-phylo] plotting geologic time scale on circular tree roee maor
• [R-sig-phylo] plotting geologic time scale on circular tree Jacob Berv
  • Re: [R-sig-phylo] plotting geologic time scale on circular tree Liam J. Revell
  • Re: [R-sig-phylo] plotting geologic time scale on circular tree Liam J. Revell
• [R-sig-phylo] color edges of internal nodes with a single child Walter, Mathias
  • Re: [R-sig-phylo] color edges of internal nodes with a single child Emmanuel Paradis
  • Re: [R-sig-phylo] color edges of internal nodes with a single child Emmanuel Paradis
• [R-sig-phylo] threshDIC value error: Inf for DIC Values Aja Carter
  • Re: [R-sig-phylo] threshDIC value error: Inf for DIC Values David Bapst
• [R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model? Max Farrell
  • Re: [R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model? Cecile Ane
  • Re: [R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model? Max Farrell
  • Re: [R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model? Cecile Ane
  • Re: [R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model? Klaus Schliep
• [R-sig-phylo] PhD studentship in evolutionary anthropology STREET, SALLY E.
• [R-sig-phylo] Will phyloXML in R be useful? George Vega Yon
  • Re: [R-sig-phylo] Will phyloXML in R be useful? Daniel Fulop
  • Re: [R-sig-phylo] Will phyloXML in R be useful? George Vega Yon
  • Re: [R-sig-phylo] Will phyloXML in R be useful? George Vega Yon
  • Re: [R-sig-phylo] Will phyloXML in R be useful? Hilmar Lapp
  • Re: [R-sig-phylo] Will phyloXML in R be useful? George Vega Yon
• [R-sig-phylo] tidytree package Yu, Guangchuang
• [R-sig-phylo] ape pascal de Clarens
  • Re: [R-sig-phylo] ape Emmanuel Paradis
  • [R-sig-phylo] Ape pascal de Clarens
• [R-sig-phylo] Shimodaira-Hasegawa test using per site log likelihood Felipe Rossetto
• [R-sig-phylo] Threshold DIC Value Error - Inf for DIC values Aja Carter
• [R-sig-phylo] Evolution 2018 symposium on PCM advances Antigoni Kaliontzopoulou
• [R-sig-phylo] Error in plotTree.wBars() in phytools Rafael S Marcondes
  • Re: [R-sig-phylo] Error in plotTree.wBars() in phytools Liam J. Revell
  • Re: [R-sig-phylo] Error in plotTree.wBars() in phytools Liam J. Revell
  • Re: [R-sig-phylo] Error in plotTree.wBars() in phytools Rafael S Marcondes
  • Re: [R-sig-phylo] Error in plotTree.wBars() in phytools Liam J. Revell
• [R-sig-phylo] keeping node attributes when reading and writing nexus files Julie Lee-Yaw
• [R-sig-phylo] paste() hangs R Andreas Kolter
  • Re: [R-sig-phylo] paste() hangs R Emmanuel Paradis
• [R-sig-phylo] Removing columns containing "N" in DNA alignment Vojtěch Zeisek
  • Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment Andreas Kolter
  • Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment Vojtěch Zeisek
  • Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment Matthew Van Dam
  • Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment Vojtěch Zeisek
  • Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment Emmanuel Paradis
  • Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment Vojtěch Zeisek
  • Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment Andreas Kolter
  • Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment Vojtěch Zeisek
• [R-sig-phylo] Unable to install ape on R-devel? David Bapst
• [R-sig-phylo] Brownian Evolution William Gelnaw
  • Re: [R-sig-phylo] Brownian Evolution Liam J. Revell
• [R-sig-phylo] Why does ace set a random number generator seed? David Bapst
  • Re: [R-sig-phylo] Why does ace set a random number generator seed? Emmanuel Paradis
  • Re: [R-sig-phylo] Why does ace set a random number generator seed? David Bapst
• [R-sig-phylo] installing a testing version of ape Elizabeth Purdom
  • Re: [R-sig-phylo] installing a testing version of ape Emmanuel Paradis
  • Re: [R-sig-phylo] installing a testing version of ape Elizabeth Purdom
  • Re: [R-sig-phylo] installing a testing version of ape Emmanuel Paradis
  • Re: [R-sig-phylo] installing a testing version of ape Elizabeth Purdom
• [R-sig-phylo] UK.PhylogenticDataAnalysisUsingR.Paradis.Jan28-Feb2 Oliver Hooker
• [R-sig-phylo] Using Phylogenetic Signal William Gelnaw
  • Re: [R-sig-phylo] Using Phylogenetic Signal Theodore Garland
• [R-sig-phylo] predict using the PGLS model output Clara Grilo
  • Re: [R-sig-phylo] predict using the PGLS model output Cecile Ane
• [R-sig-phylo] question-state code change and simmap Felipe Rossetto
• [R-sig-phylo] Postdoc in R phylogenetics Liam J. Revell
  • [R-sig-phylo] Postdoc in R phylogenetics Liam Revell
• [R-sig-phylo] Can I get coordinates from plot.phylo and not get blank page Elizabeth Purdom
  • Re: [R-sig-phylo] Can I get coordinates from plot.phylo and not get blank page Emmanuel Paradis
  • Re: [R-sig-phylo] Can I get coordinates from plot.phylo and not get blank page Rafael Maia
  • Re: [R-sig-phylo] Can I get coordinates from plot.phylo and not get blank page Emmanuel Paradis
  • Re: [R-sig-phylo] Can I get coordinates from plot.phylo and not get blank page Liam J. Revell
• [R-sig-phylo] Converting from data frame or a list of data frames to a DNAbin Thiago A . Leão-Pires
  • [R-sig-phylo] RES: Converting from data frame or a list of data frames to a DNAbin Thiago A . Leão-Pires
• [R-sig-phylo] Confidence intervals for B in ape::binaryPGLMM Wouter van der Bijl
  • Re: [R-sig-phylo] Confidence intervals for B in ape::binaryPGLMM Emmanuel Paradis
  • Re: [R-sig-phylo] Confidence intervals for B in ape::binaryPGLMM Wouter van der Bijl
• [R-sig-phylo] estimating speciation rates at nodes Pavel Škaloud
• [R-sig-phylo] RMesquite package Ayelet Salman
  • Re: [R-sig-phylo] RMesquite package Hilmar Lapp
  • Re: [R-sig-phylo] RMesquite package Hilmar Lapp
  • Re: [R-sig-phylo] RMesquite package Ayelet Salman
• [R-sig-phylo] Possible Bug in ape::read.tree George Vega Yon
  • Re: [R-sig-phylo] Possible Bug in ape::read.tree Mario José Marques-Azevedo
  • Re: [R-sig-phylo] Possible Bug in ape::read.tree George Vega Yon
  • Re: [R-sig-phylo] Possible Bug in ape::read.tree Liam J. Revell
  • Re: [R-sig-phylo] Possible Bug in ape::read.tree Klaus Schliep
  • Re: [R-sig-phylo] Possible Bug in ape::read.tree George Vega Yon
  • Re: [R-sig-phylo] Possible Bug in ape::read.tree Emmanuel Paradis
• [R-sig-phylo] Simulating traits with different rates of evolution Alejandro Gonzalez Voyer
  • Re: [R-sig-phylo] Simulating traits with different rates of evolution Liam J. Revell
• [R-sig-phylo] counting parallel mutations in ancestral reconstructions Read, Timothy D
• [R-sig-phylo] Mapping complex characters Robin van Velzen
  • Re: [R-sig-phylo] Mapping complex characters Julien CLAUDE
  • Re: [R-sig-phylo] Mapping complex characters Robin van Velzen
  • Re: [R-sig-phylo] Mapping complex characters Julien CLAUDE
• [R-sig-phylo] Interpretation of lambda=1 (measurement error?) Rafael S Marcondes
• [R-sig-phylo] tip labels-stochastic mapping Felipe Rossetto
  • Re: [R-sig-phylo] tip labels-stochastic mapping Liam J. Revell
  • [R-sig-phylo] OUwie and simmap trees constructed from prior probabilities of tip states Marko Djurakic
  • Re: [R-sig-phylo] OUwie and simmap trees constructed from prior probabilities of tip states Liam J. Revell
• [R-sig-phylo] new version of ape Emmanuel Paradis
• [R-sig-phylo] Phylogenetic quantile regression briansedio
• [R-sig-phylo] phylogenetic signal with sample sizes but no standard errors Vincenzo Ellis
  • Re: [R-sig-phylo] phylogenetic signal with sample sizes but no standard errors Theodore Garland
  • Re: [R-sig-phylo] phylogenetic signal with sample sizes but no standard errors Joe Felsenstein
  • Re: [R-sig-phylo] phylogenetic signal with sample sizes but no standard errors Emmanuel Paradis
• [R-sig-phylo] Frequency histograms in APE LUCAS A. (599841)
  • Re: [R-sig-phylo] Frequency histograms in APE Emmanuel Paradis
• [R-sig-phylo] Phylogenetic circular regression Lucas Jardim
• [R-sig-phylo] phylogenetic circular linear regression f.k...@mailbox.org
  • Re: [R-sig-phylo] phylogenetic circular linear regression Florian Boucher
  • Re: [R-sig-phylo] phylogenetic circular linear regression Florian Boucher
  • Re: [R-sig-phylo] phylogenetic circular linear regression Peter Smits
• Re: [R-sig-phylo] selecting a set of incongruent trees from a posterior distribution Santiago Sánchez
  • Re: [R-sig-phylo] selecting a set of incongruent trees from a posterior distribution Klaus Schliep
  • Re: [R-sig-phylo] selecting a set of incongruent trees from a posterior distribution Jarrod Hadfield
  • Re: [R-sig-phylo] selecting a set of incongruent trees from a posterior distribution Jesse Delia
• [R-sig-phylo] selecting a set of incongruent trees from a posterior distribution Jesse Delia
  • Re: [R-sig-phylo] selecting a set of incongruent trees from a posterior distribution Eduardo Ascarrunz
• [R-sig-phylo] comparing rates of evolution of a phenotypic trait among clades Karla Shikev
  • Re: [R-sig-phylo] comparing rates of evolution of a phenotypic trait among clades Liam J. Revell
  • Re: [R-sig-phylo] comparing rates of evolution of a phenotypic trait among clades Karla Shikev
  • Re: [R-sig-phylo] comparing rates of evolution of a phenotypic trait among clades Liam J. Revell
  • Re: [R-sig-phylo] comparing rates of evolution of a phenotypic trait among clades Julien Clavel
  • Re: [R-sig-phylo] comparing rates of evolution of a phenotypic trait among clades Theodore Garland
• [R-sig-phylo] Function to Extend Tips? William Gearty
  • Re: [R-sig-phylo] Function to Extend Tips? David Bapst
  • Re: [R-sig-phylo] Function to Extend Tips? Joseph W. Brown
  • Re: [R-sig-phylo] Function to Extend Tips? William Gearty
  • Re: [R-sig-phylo] Function to Extend Tips? Joseph W. Brown
  • Re: [R-sig-phylo] Function to Extend Tips? William Gearty
  • Re: [R-sig-phylo] Function to Extend Tips? Joseph W. Brown
• [R-sig-phylo] How to incorporate intraspecific variation in MCMCglmm Diogo B. Provete
  • Re: [R-sig-phylo] How to incorporate intraspecific variation in MCMCglmm Jarrod Hadfield
  • Re: [R-sig-phylo] How to incorporate intraspecific variation in MCMCglmm Jarrod Hadfield
• [R-sig-phylo] Test statistic Valentine Usongo
• [R-sig-phylo] changes in results of OUwie Diego Salazar Tortosa

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