subject:"\[Freesurfer\] License issue"

Re: [Freesurfer] license issue with the updated version

2023-11-18 Thread fsbuild

External Email - Use Caution

Please let us know if you are runningMacOS 14 (Sonoma) on an Intel 
or silicon Mac (M1, M2 chip).  The system requirements at 
https://secure-web.cisco.com/10qwlQRot-nOOCuaXBtxsk1Ua4Tfh-PQlj0cP9-E6KzZM5idg3c7iTvMmQOzSG9PAcBrbFYMe35KnBiCn3y7IG-rVgEj0kSLvVbOHwxylEX_7qd2UpvZd0RI-joHMIjoQqJdBRMrn0pnSFHnz-SFFpzBuN9LN_tXR69BAZD8GdgOe42Qemok-1oStCPJooJ1xLsKbXOVgiFxHk0d55wZOgkW-uv9xSSB5VxhPx4QaNdwbS0mGZXww_bzMfboFOLEITeum3djwVx3EMwWM__x1IexmzFZEqSnGdgzzfIzKOYETgIxs35-X4U51g2Caz2Zn--cVCQFL8QZpew0IVrOvKA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Frel7downloads
 list MacOS 13 (Ventura) as the latest supported MacOS for the 7.4.1 release.
- R.

On Nov 18, 2023, at 18:29, Atena Akbari atenaakb...@gmail.com 
wrote:QObject::killTimer: Timers cannot be stopped from another thread

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Please note that this e-mail is not secure (encrypted).  If you do not wish to 
continue communication over unencrypted e-mail, please notify the sender of 
this message immediately.  Continuing to send or respond to e-mail after 
receiving this message means you understand and accept this risk and wish to 
continue to communicate over unencrypted e-mail.

Re: [Freesurfer] license issue with the updated version

2023-11-18 Thread Atena Akbari

External Email - Use Caution

Thanks a lot, Yujing, I updated the FS_LICENSE accordingly, but when I want
to load a surface in freeview I get the following error:

QObject::killTimer: Timers cannot be stopped from another thread
QObject::~QObject: Timers cannot be stopped from another thread

also, with tkregister2 or tkregisterfv I don't get the GUI, it gives me the
"MRIread failed" error. I appreciate your help.

All the best,
Atena

On Sat, Nov 18, 2023 at 1:00 PM Huang, Yujing 
wrote:

> Hi Atena,
>
>
>
> Can you check if you have environment variable FS_LICENSE set?
>
> >echo $FS_LICENSE
>
>
>
> Set FS_LICENSE to your license file in 7.4.1,
>
> >export FS_LICENSE=
>
>
>
> Best,
>
>
>
> Yujing
>
>
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Atena Akbari
> *Sent:* Friday, November 17, 2023 6:06 PM
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* [Freesurfer] license issue with the updated version
>
>
>
> *External Email - Use Caution*
>
> Dear freesurfer team
>
>
>
> I have uninstalled the previous versions of freesurfer on my mac (Sonoma
> 14.1), and have installed a new version 7.4.1 based on the step by step
> freesurfer installation info on the website. I have set the freesurfer home
> directory as follows:
>
>
>
> export FREESURFER_HOME=/Applications/freesurfer/7.4.1/
>
> export SUBJECTS_DIR=path/to/my/data
>
> source $FREESURFER_HOME/SetUpFreeSurfer.sh
>
>
>
> and the license is in the /Applications/freesurfer/*MailScanner has
> detected a possible fraud attempt from "7.4.1" claiming to be* *
> MailScanner warning: numerical links are often malicious:* 7.4.1.
> <http://7.4.1.> But when I run a freesurfer command I get the following
> error:
>
>
>
> ERROR: FreeSurfer license file /Applications/freesurfer/7.2.0/license.txt
> not found.
>
> QObject::killTimer: Timers cannot be stopped from another thread
>
> QObject::~QObject: Timers cannot be stopped from another thread
>
> /Applications/freesurfer/7.4.1//bin/freeview: line 2:  2938 Segmentation
> fault: 11  $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@"
>
>
>
> Could you help me with this issue?
>
>
>
> thanks so much.
>
>
>
> Best,
>
> Atena
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://secure-web.cisco.com/1zqU3GLsVIY0xt4g_U_sVeUZlGM0AK4LuIi3tMD23u7k9o9sTzeu_redmR-G51o0PUlrX_Ze52qh6h8bzAxZypQ3xjgDhXFQRQzwD9L2Kif5BTnZS2D3Bq1NzmV27dM6xtz9Q6GFCQjaBu0kkIf7SpzzIxXNUFRgyFaHGXcsXE1Xc1FK_ZvxQVFj3OGdMek8pXe9yFo4qDfmI0h3mlt1HZOxp0xbHyR7Tx2y5S32J8WvgGdP-PaiEa5CxuUDPRRmxR1b8nLxZei7rZYcsb8D3HwYCwX-WZxthxv1e5rX5Xo6mRGZaCa1NUbyiuNQ8eDdI3QK9-YSSVSp1r52y5WQqdQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
> The information in this e-mail is intended only for the person to whom it
> is addressed.  If you believe this e-mail was sent to you in error and the
> e-mail contains patient information, please contact the Mass General
> Brigham Compliance HelpLine at
> https://secure-web.cisco.com/1FS2W3Ked5KnVBVcy1_V77W_0hRtD5Y3ayHccRVbabdim2UmWAT61-LfKKvn8a_TuA2jNG-L0m9NSiMlV_G6Am4_H26dIpKwy8hJ8Oagsl8AiJfwOvZUyGE7L2vIj5QePEq0H-AqIruY8nfbaKHpJ2bmgVlDWoZAUucBhkUD3IWf0mY9EEPbmd7eX5yrFYX80A9vatjglXwqePyuzvqQYneBqB6PgFuDO7YU3jvStNKAnCS3o9BfIuSFvDXUUUtAlPZ0QRJJFVPk-48lfpSUvpBI8BjXlMI-w2rdJaLCgTs7Rhrw8DS0XpTRPecDih5ehI9B9Bpz9RgVWdZeLmw00rg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline
>  <
> https://secure-web.cisco.com/1FS2W3Ked5KnVBVcy1_V77W_0hRtD5Y3ayHccRVbabdim2UmWAT61-LfKKvn8a_TuA2jNG-L0m9NSiMlV_G6Am4_H26dIpKwy8hJ8Oagsl8AiJfwOvZUyGE7L2vIj5QePEq0H-AqIruY8nfbaKHpJ2bmgVlDWoZAUucBhkUD3IWf0mY9EEPbmd7eX5yrFYX80A9vatjglXwqePyuzvqQYneBqB6PgFuDO7YU3jvStNKAnCS3o9BfIuSFvDXUUUtAlPZ0QRJJFVPk-48lfpSUvpBI8BjXlMI-w2rdJaLCgTs7Rhrw8DS0XpTRPecDih5ehI9B9Bpz9RgVWdZeLmw00rg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>
>  .
>
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Please note that this e-mail is not secure (encrypted).  If you do not wish to 
continue communication over unencrypted e-mail, please notify the sender of 
this message immediately.  Continuing to send or respond to e-mail after 
receiving this message means you understand and accept this risk and wish to 
continue to communicate over unencrypted e-mail.

Re: [Freesurfer] license issue with the updated version

2023-11-18 Thread Huang, Yujing

Hi Atena,

Can you check if you have environment variable FS_LICENSE set?
>echo $FS_LICENSE

Set FS_LICENSE to your license file in 7.4.1,
>export FS_LICENSE=

Best,

Yujing

From: freesurfer-boun...@nmr.mgh.harvard.edu 
 On Behalf Of Atena Akbari
Sent: Friday, November 17, 2023 6:06 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] license issue with the updated version


External Email - Use Caution
Dear freesurfer team

I have uninstalled the previous versions of freesurfer on my mac (Sonoma 14.1), 
and have installed a new version 7.4.1 based on the step by step freesurfer 
installation info on the website. I have set the freesurfer home directory as 
follows:


export FREESURFER_HOME=/Applications/freesurfer/7.4.1/

export SUBJECTS_DIR=path/to/my/data

source $FREESURFER_HOME/SetUpFreeSurfer.sh



and the license is in the /Applications/freesurfer/MailScanner has detected a 
possible fraud attempt from "7.4.1" claiming to be MailScanner warning: 
numerical links are often malicious: 7.4.1.<http://7.4.1.> But when I run a 
freesurfer command I get the following error:



ERROR: FreeSurfer license file /Applications/freesurfer/7.2.0/license.txt not 
found.

QObject::killTimer: Timers cannot be stopped from another thread

QObject::~QObject: Timers cannot be stopped from another thread

/Applications/freesurfer/7.4.1//bin/freeview: line 2:  2938 Segmentation fault: 
11  $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@"



Could you help me with this issue?



thanks so much.



Best,

Atena
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is 
addressed.  If you believe this e-mail was sent to you in error and the e-mail 
contains patient information, please contact the Mass General Brigham 
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline 
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted).  If you do not wish to 
continue communication over unencrypted e-mail, please notify the sender of 
this message immediately.  Continuing to send or respond to e-mail after 
receiving this message means you understand and accept this risk and wish to 
continue to communicate over unencrypted e-mail.

[Freesurfer] license issue with the updated version

2023-11-17 Thread Atena Akbari

External Email - Use Caution

Dear freesurfer team

I have uninstalled the previous versions of freesurfer on my mac (Sonoma
14.1), and have installed a new version 7.4.1 based on the step by step
freesurfer installation info on the website. I have set the freesurfer home
directory as follows:

export FREESURFER_HOME=/Applications/freesurfer/7.4.1/

export SUBJECTS_DIR=path/to/my/data

source $FREESURFER_HOME/SetUpFreeSurfer.sh


and the license is in the /Applications/freesurfer/7.4.1. But when I run a
freesurfer command I get the following error:


ERROR: FreeSurfer license file /Applications/freesurfer/7.2.0/license.txt
not found.

QObject::killTimer: Timers cannot be stopped from another thread

QObject::~QObject: Timers cannot be stopped from another thread

/Applications/freesurfer/7.4.1//bin/freeview: line 2:  2938 Segmentation
fault: 11  $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@"


Could you help me with this issue?


thanks so much.


Best,

Atena
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Please note that this e-mail is not secure (encrypted).  If you do not wish to 
continue communication over unencrypted e-mail, please notify the sender of 
this message immediately.  Continuing to send or respond to e-mail after 
receiving this message means you understand and accept this risk and wish to 
continue to communicate over unencrypted e-mail.

Re: [Freesurfer] License issue

2023-01-31 Thread Bennet Fauber

External Email - Use Caution

If the license was downloaded to Windows and copied to Linux, or vice
versa, it could be the line endings.  If the final location is on a Linux
machine, you might tr

$ dos2unix license.txt

to see if that helps?


On Tue, Jan 31, 2023 at 1:28 PM Wighton, Paul 
wrote:

> Hi Chris,
>
> What version of FreeSurfer are you using?  There are some issues with the
> license file with really old (<6.0) versions, but the 5.3-HCP version
> should work.
>
> https://secure-web.cisco.com/1WkRW0lCt96xJb1nKFz0YQ5LOrKcCZbRirRP5VeJBx1e7eWs8wmUS1ZBfyv6C0pQvPl4DZhQHHqlbXLD_JIyarJZkOhDzGJ_qK1KKfJnNeUdaEL9MQVD-77ReVu1hge6Y9gpQBCYun5d6gt9HKrDSuP9qI1CCp2R3LC82jgXp1Fz6VDhCLFu24Pj2F32woW4z89beUa9D56PuzQb4uGK39B9-mclRFXeIFud5g-Bclxb2QD_LGF_KBVKbYhYiewW5CCigh0fXzwL5g9FNynq7lraiIJrWURodx1TMnlGCslwhS7t_GhLlewSszDlSel8WFnLv-XIrDSx-D_3W0Tco4g/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F5.3.0-HCP%2F
>
> -Paul
>
> 
> From: freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Sayre, Christopher <
> csa...@vtc.vt.edu>
> Sent: Tuesday, January 31, 2023 12:21 PM
> To: Freesurfer support list
> Subject: [Freesurfer] License issue
>
> External Email - Use Caution
> Hello all,
>
> I have gotten my license.txt file and I have copied it to the
> $FREESURFERHOME Directory. When attempting to use freesurfer I am getting
> the following error. Error parsing licensing file, expected 4 values.
> Looking at the file there are 4 lines in the file.
>
> Does anyone have any ideas?
>
> Thanks,
>
> Chris Sayre
> Systems Engineer
> Fralin Biomedical Research Institute at VTC<
> https://secure-web.cisco.com/1PzAXQtNRov_9n6NeWXa7FjyosKE41mO7DpnfmPqJRkLlS_rX5oRKhNTaU2OHlJ4L4PeCWZdgGrHpW6JUtDA0JSETRIGJykCUqddmWMp36TLSnYOkPQs_N_Fu9FfV0u5Pg44lNXtfzRYtpC-48EzPrxfRYNFu9YOxO7WYsQVRAcGr-FvLzmhFtJMPLzQSH2XiP0WkG6xBZ00tom3-iRsO2OKqx1zPKxZ5VAu54auuDh7djc21Tnul604zxDJ-UPlbsymU1M1xgOdZu9Sv967a1P8vOMlkrPGN2KZAwL3PKjeUoazaHBZIWH6vsgBahZXheoKz0e3NizghqhS2K0iR4A/https%3A%2F%2Fresearch.vtc.vt.edu%2F
> >
> Health Sciences and Technology
> 2 Riverside Circle, Roanoke, VA 24016
> O: 540-526-2012 | E: csa...@vtc.vt.edu<mailto:csa...@vtc.vt.edu>
> Recent Media Stories<
> https://secure-web.cisco.com/1y6if2h3SmT5W2Rm9gz7mb-HZ2jABcD5Hd70fNAPhelxxYSTeiZiRnV1z75FQ7syJkbF2UA5vtdOKMkFAD68TMq1Gc_Oj7j87C-a8ZxLLG1pcVBDVgOkCg5y3ZI2rrr8h36t0Oj3w2F4t5JGdHD61HCw0ihDm3VvpeHT4YuTidN3Pdqz-Hb3J8WjmoGxbrJg2FUnDstKanS_3WvtdOsAIyUkJuxqYBRHqe85n8_Nw68yyU6uRxpyApPP9zWh1_KxIHKAvLS8zCWUncud7t7MVCiRNhRSnTv74GGWjHk2EUUjM8ndV_QFi__5bGCXui7C1fWSJP_oj6eGQNIYiIHNDCw/https%3A%2F%2Fresearch.vtc.vt.edu%2Fnews%2F>
> | Facebook<
> https://secure-web.cisco.com/1KgborgQJrN48EUgjnrUvqAZP2tewy53jjaVf4BctRQ2CtFz_pxpe4Rvkx47YdZVrM218E7Sr1nW2-UA3hzoTfR85EfdXkiD8CF-4kF3Gm1eLeieU1pOrMBNinAnduxrJaQmaRiKCKMCn8WpWo0ysU7T-5RFvrtgWgu9KwAZhvZob0UVH6qhwESZXE6bl6HruoHO5LVvtqN1XjGW-qkhANu-ixl-uAEm1xJJKW54eUA0H8QuN8dj6LHOxs_DyjT8SVJFwdUzna_bqedtWensPlFytLO3Yt_eq5QFVttCQS2O6BmBUbHtQrC1NUtvzXp10U3QPEn9FXPyWLmBLutCM2g/https%3A%2F%2Fwww.facebook.com%2Ffralinbiomedical>
> | Twitter<
> https://secure-web.cisco.com/1yw6tLfQz5sl-rBmwJc4G5o1evZt5c9y7niDmL2gyEa6o2mKdgZZ0aHFpoB6mK28JP5qb7jewH5TAPjC-s5ZCNiFCAE9olwaXr8TvRgLWWuu-yu4SEgSabkiCYNe0mnsA39XkRC5FrUJ-sHju-pAcoxu2uiw_yFlZpLNjXDXrEJcioHqwTyRNogoBWq3zfxVTj-wCG3ZVfpH1PZlQGiVsljFlKmDZrmDX3hm9Xrh4iM9mfRGGG2yNSyLjcKiH2nuulUVdc-chMLK0Bw4iCR-9MuYTdf7queFUGfAIzDI8zuJ3dqbcQ2rb1F5vFP4R6_bGq5OMVAjoDuu8KDgDgnVmqA/https%3A%2F%2Ftwitter.com%2FFralinBiomed>
> | Instagram<
> https://secure-web.cisco.com/1Z0qi8rSf3A-X6MOlIQq2Z8hZFZz5h9HAXd2CDvXEMc5u4e6NiE3_aXgRz3IWorbE-N0QegPLsJWRdrtNHdrl-8Th5fWe8ZwZ_bgpN_W1zgEHhwM-MkxaWxmf8lmUSfItXZz7kvDeSQFvwHnFpSkm3QKp_LOnuVwFeDxb7Y3lg57RwNSYPpJL6KfenirfbGddJGkIJsFyszPVdcTBh4pB-gZOcLcRr6M2cR0FWoQCqsI7GcnohjIFidI7p5TdnauPFcCkSwTyO9RulFebl-U_6gE2LbMZMvH60WpmWqkgBiBWdyWOwuvh_Nx7SdJOEIM6ezXbXybz09TVwbBr5n4S_A/https%3A%2F%2Fwww.instagram.com%2Ffralinbiomedical%2F>
> | LinkedIn<
> https://secure-web.cisco.com/1nH3SOkljui4g5BNqYv1yGRm9toe1_4mvU7fJbMfYcvVvErUU-Wn9JmZfD1hYgK7M8lqRI4y-c3DG-9EP64eWsuQM2rr6s0ng9iKerRFctTIpNvno097iIq9p9dMZQrGLzP_4MXUO_QAHoBfBxi0zhVrze84byut1Ul5zPR2oqBZ9sZhyQxNOWGJTX11eRY46chzwPAXZE8VmDC4bvW0lwqE-x0CAad_sIuKEppdm43ayFOUACmnP0hb-XaJO3jfge0WWkZlL_hGiOA4dLta9Nuf7V-gX7lyFMqpwz-CngNiVnT1P4rKxiH30l0Ln5HdS0Xdh4uo2p0QCjKbUd_jqmQ/https%3A%2F%2Fwww.linkedin.com%2Fcompany%2F19066634%2F
> >
>
> [signature_1749735209]
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://secure-web.cisco.com/1HJG_HlFUfNHBsrcLfCH4fezfVxfkuDhsa7Gf53ssAaAsGoy-mbZH8LWbqliUyu7fQpV-xvFsDAwdV-FaltNziP9smMh_ib6UQNdGu31pTEXSeYfGuSS7bqyBJwI

Re: [Freesurfer] License issue

2023-01-31 Thread Wighton, Paul

Hi Chris,

What version of FreeSurfer are you using?  There are some issues with the 
license file with really old (<6.0) versions, but the 5.3-HCP version should 
work.

https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-HCP/

-Paul


From: freesurfer-boun...@nmr.mgh.harvard.edu 
 on behalf of Sayre, Christopher 

Sent: Tuesday, January 31, 2023 12:21 PM
To: Freesurfer support list
Subject: [Freesurfer] License issue

External Email - Use Caution
Hello all,

I have gotten my license.txt file and I have copied it to the $FREESURFERHOME 
Directory. When attempting to use freesurfer I am getting the following error. 
Error parsing licensing file, expected 4 values. Looking at the file there are 
4 lines in the file.

Does anyone have any ideas?

Thanks,

Chris Sayre
Systems Engineer
Fralin Biomedical Research Institute at 
VTC<https://secure-web.cisco.com/1PzAXQtNRov_9n6NeWXa7FjyosKE41mO7DpnfmPqJRkLlS_rX5oRKhNTaU2OHlJ4L4PeCWZdgGrHpW6JUtDA0JSETRIGJykCUqddmWMp36TLSnYOkPQs_N_Fu9FfV0u5Pg44lNXtfzRYtpC-48EzPrxfRYNFu9YOxO7WYsQVRAcGr-FvLzmhFtJMPLzQSH2XiP0WkG6xBZ00tom3-iRsO2OKqx1zPKxZ5VAu54auuDh7djc21Tnul604zxDJ-UPlbsymU1M1xgOdZu9Sv967a1P8vOMlkrPGN2KZAwL3PKjeUoazaHBZIWH6vsgBahZXheoKz0e3NizghqhS2K0iR4A/https%3A%2F%2Fresearch.vtc.vt.edu%2F>
Health Sciences and Technology
2 Riverside Circle, Roanoke, VA 24016
O: 540-526-2012 | E: csa...@vtc.vt.edu<mailto:csa...@vtc.vt.edu>
Recent Media 
Stories<https://secure-web.cisco.com/1y6if2h3SmT5W2Rm9gz7mb-HZ2jABcD5Hd70fNAPhelxxYSTeiZiRnV1z75FQ7syJkbF2UA5vtdOKMkFAD68TMq1Gc_Oj7j87C-a8ZxLLG1pcVBDVgOkCg5y3ZI2rrr8h36t0Oj3w2F4t5JGdHD61HCw0ihDm3VvpeHT4YuTidN3Pdqz-Hb3J8WjmoGxbrJg2FUnDstKanS_3WvtdOsAIyUkJuxqYBRHqe85n8_Nw68yyU6uRxpyApPP9zWh1_KxIHKAvLS8zCWUncud7t7MVCiRNhRSnTv74GGWjHk2EUUjM8ndV_QFi__5bGCXui7C1fWSJP_oj6eGQNIYiIHNDCw/https%3A%2F%2Fresearch.vtc.vt.edu%2Fnews%2F>
 | 
Facebook<https://secure-web.cisco.com/1KgborgQJrN48EUgjnrUvqAZP2tewy53jjaVf4BctRQ2CtFz_pxpe4Rvkx47YdZVrM218E7Sr1nW2-UA3hzoTfR85EfdXkiD8CF-4kF3Gm1eLeieU1pOrMBNinAnduxrJaQmaRiKCKMCn8WpWo0ysU7T-5RFvrtgWgu9KwAZhvZob0UVH6qhwESZXE6bl6HruoHO5LVvtqN1XjGW-qkhANu-ixl-uAEm1xJJKW54eUA0H8QuN8dj6LHOxs_DyjT8SVJFwdUzna_bqedtWensPlFytLO3Yt_eq5QFVttCQS2O6BmBUbHtQrC1NUtvzXp10U3QPEn9FXPyWLmBLutCM2g/https%3A%2F%2Fwww.facebook.com%2Ffralinbiomedical>
 | 
Twitter<https://secure-web.cisco.com/1yw6tLfQz5sl-rBmwJc4G5o1evZt5c9y7niDmL2gyEa6o2mKdgZZ0aHFpoB6mK28JP5qb7jewH5TAPjC-s5ZCNiFCAE9olwaXr8TvRgLWWuu-yu4SEgSabkiCYNe0mnsA39XkRC5FrUJ-sHju-pAcoxu2uiw_yFlZpLNjXDXrEJcioHqwTyRNogoBWq3zfxVTj-wCG3ZVfpH1PZlQGiVsljFlKmDZrmDX3hm9Xrh4iM9mfRGGG2yNSyLjcKiH2nuulUVdc-chMLK0Bw4iCR-9MuYTdf7queFUGfAIzDI8zuJ3dqbcQ2rb1F5vFP4R6_bGq5OMVAjoDuu8KDgDgnVmqA/https%3A%2F%2Ftwitter.com%2FFralinBiomed>
 | 
Instagram<https://secure-web.cisco.com/1Z0qi8rSf3A-X6MOlIQq2Z8hZFZz5h9HAXd2CDvXEMc5u4e6NiE3_aXgRz3IWorbE-N0QegPLsJWRdrtNHdrl-8Th5fWe8ZwZ_bgpN_W1zgEHhwM-MkxaWxmf8lmUSfItXZz7kvDeSQFvwHnFpSkm3QKp_LOnuVwFeDxb7Y3lg57RwNSYPpJL6KfenirfbGddJGkIJsFyszPVdcTBh4pB-gZOcLcRr6M2cR0FWoQCqsI7GcnohjIFidI7p5TdnauPFcCkSwTyO9RulFebl-U_6gE2LbMZMvH60WpmWqkgBiBWdyWOwuvh_Nx7SdJOEIM6ezXbXybz09TVwbBr5n4S_A/https%3A%2F%2Fwww.instagram.com%2Ffralinbiomedical%2F>
 | 
LinkedIn<https://secure-web.cisco.com/1nH3SOkljui4g5BNqYv1yGRm9toe1_4mvU7fJbMfYcvVvErUU-Wn9JmZfD1hYgK7M8lqRI4y-c3DG-9EP64eWsuQM2rr6s0ng9iKerRFctTIpNvno097iIq9p9dMZQrGLzP_4MXUO_QAHoBfBxi0zhVrze84byut1Ul5zPR2oqBZ9sZhyQxNOWGJTX11eRY46chzwPAXZE8VmDC4bvW0lwqE-x0CAad_sIuKEppdm43ayFOUACmnP0hb-XaJO3jfge0WWkZlL_hGiOA4dLta9Nuf7V-gX7lyFMqpwz-CngNiVnT1P4rKxiH30l0Ln5HdS0Xdh4uo2p0QCjKbUd_jqmQ/https%3A%2F%2Fwww.linkedin.com%2Fcompany%2F19066634%2F>

[signature_1749735209]

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is 
addressed.  If you believe this e-mail was sent to you in error and the e-mail 
contains patient information, please contact the Mass General Brigham 
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline 
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted).  If you do not wish to 
continue communication over unencrypted e-mail, please notify the sender of 
this message immediately.  Continuing to send or respond to e-mail after 
receiving this message means you understand and accept this risk and wish to 
continue to communicate over unencrypted e-mail.

[Freesurfer] License issue

2023-01-31 Thread Sayre, Christopher

External Email - Use Caution

Hello all,

I have gotten my license.txt file and I have copied it to the $FREESURFERHOME 
Directory. When attempting to use freesurfer I am getting the following error. 
Error parsing licensing file, expected 4 values. Looking at the file there are 
4 lines in the file.

Does anyone have any ideas?

Thanks,

Chris Sayre
Systems Engineer
Fralin Biomedical Research Institute at 
VTC
Health Sciences and Technology
2 Riverside Circle, Roanoke, VA 24016
O: 540-526-2012 | E: csa...@vtc.vt.edu
Recent Media 
Stories
 | 
Facebook
 | 
Twitter
 | 
Instagram
 | 
LinkedIn

[signature_1749735209]

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is 
addressed.  If you believe this e-mail was sent to you in error and the e-mail 
contains patient information, please contact the Mass General Brigham 
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline 
 .
Please note that this e-mail is not secure (encrypted).  If you do not wish to 
continue communication over unencrypted e-mail, please notify the sender of 
this message immediately.  Continuing to send or respond to e-mail after 
receiving this message means you understand and accept this risk and wish to 
continue to communicate over unencrypted e-mail.

Re: [Freesurfer] License issue {Disarmed}

2018-11-20 Thread Sarah Haigh

External Email - Use Caution

Thank you! This seemed to work. I got my email address and the numbers this
time in the license. Not sure what happened there. Good check.

Sarah

On Nov 20, 2018, at 3:46 PM, fsbuild
mailto:fsbu...@contbay.com>> wrote:

External Email - Use Caution

Hi Sarah,

I would just move that file aside (rename it to something that is not
license.txt) and follow the instructions on the wiki to generate another
license.txt file. Then you could check it again with the previous commands.

https://surfer.nmr.mgh.harvard.edu/fswiki/License

- R.

On Nov 20, 2018, at 18:30, Sarah Haigh mailto:sha...@unr.edu>>
wrote:

External Email - Use Caution

Hi,

I ran the code and the license appeared, but no email address or numbers. These
were the first few lines:
FreeSurfer Software License Agreement ("Agreement")
Version 1.0 (February 2011)

Is this wrong? The rwx settings look correct.

Thanks

Sarah

On Nov 20, 2018, at 2:52 PM, fsbuild
mailto:fsbu...@contbay.com>> wrote:

External Email - Use Caution

Hello Sarah,

If you can bring up a terminal with your freesurfer environment set, then
please try the following commands, i.e.,

$ cd $FREESURFER_HOME
$ cat $FS_LICENSE

Without posting the contents of your license, I think the first line is an
email address, followed by a line with several numbers, followed by 2 lines of
text.

$ ls -l $FS_LICENSE
-rw-r--r--@ 1 userid staff 57 Jan 9 2018 /Users/userid/license.txt

the rw-r-r privileges (644) mean its writeable only by you (which is fine).

- R.

Sarah Haigh

November 20, 2018 at 16:42
External Email - Use Caution

Yes, I set the FreeSurfer home environment and added the license file to that
folder. It is Word readable.

Sarah

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Greve, Douglas N.,Ph.D.

November 20, 2018 at 15:03
did you put it in $FREESURFER_HOME/.license ? Is it world-readable?

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Sarah Haigh

November 20, 2018 at 14:38
External Email - Use Caution

Hello Freesurfers,

Can anyone help with a licensing issue I have? I downloaded Freesurfer the
other day with a brand new license and got the following message: “ERROR:
Invalid FreeSurfer license key was found in license file”. I tried getting a
new license and even borrowed someone else’s license and they all came up with
the same error. Any ideas?

Thanks for your help.

Sarah

Assistant Professor,
University of Nevada, Reno,
Department of Psychology and Center for Integrative Neuroscience,
1664 N. Virginia Street
Reno, NV 89557-0296

Carnegie Mellon University,
Department of Psychology and Center for the Neural Basis of Cognition,
5000 Forbes Avenue,
Pittsburgh, PA 15213.

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurferdata=01%7C01%7Cshaigh%40unr.edu%7C16c5246a561d4631f7bc08d64f3ae949%7C523b4bfc0ebd4c03b2b96f6a17fd31d8%7C1sdata=W1G8vsv2ubqApboTTM9kTHllGoV%2Bc4aX9gC6sW2fTqI%3Dreserved=0

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurferdata=01%7C01%7Cshaigh%40unr.edu%7Ced5da752530f474587b108d64f427d7b%7C523b4bfc0ebd4c03b2b96f6a17fd31d8%7C1sdata=UWeqYdyrmpSMc2dRp%2BhCpUv3TDr%2BOvFyDrTW8RNB62w%3Dreserved=0

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] License issue

2018-11-20 Thread fsbuild

External Email - Use Caution

Hi Sarah,
I would just move that file aside (rename it to something that is not 
license.txt) and follow the instructions on the wiki to generate another 
license.txt file. Then you could check it again with the previous 
commands.
 https://surfer.nmr.mgh.harvard.edu/fswiki/License
- R.

On Nov 20, 2018, at 18:30, Sarah Haigh sha...@unr.edu 
wrote:External Email - Use 
CautionHi,I ran the code and 
the license appeared, but no email address or numbers. These were the first few 
lines:FreeSurfer Software License Agreement ("Agreement")   
   Version 1.0 (February 2011)Is 
this wrong? The rwx settings look correct.ThanksSarahOn Nov 20, 2018, at 
2:52 PM, fsbuild fsbu...@contbay.com 
wrote:External Email - Use 
CautionHello Sarah,If you can 
bring up a terminal with your freesurfer environment set, then please try the 
following commands, i.e.,$ cd $FREESURFER_HOME$ cat $FS_LICENSEoutput 
deletedWithout posting the contents of your license, I think the first line 
is an email address, followed by a line with several numbers, followed by 2 
lines of text.$ ls -l $FS_LICENSE-rw-r--r--@ 1 userid staff 57 
Jan 9 2018 /Users/userid/license.txtthe rw-r-r privileges (644) 
mean its writeable only by you (which is fine).- R.- R.Sarah 
HaighNovember 20, 2018 at 16:42External Email - Use CautionYes, I 
set the FreeSurfer home environment and added the license file to that folder. 
It is Word 
readable.Sarah___Freesurfer mailing 
listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferGreve,
 Douglas N.,Ph.D.November 20, 2018 at 15:03did you put it in 
$FREESURFER_HOME/.license ? Is it 
world-readable?___Freesurfer 
mailing 
listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferSarah
 HaighNovember 20, 2018 at 14:38External Email - Use CautionHello 
Freesurfers,Can anyone help with a licensing issue I have? I downloaded 
Freesurfer the other day with a brand new license and got the following 
message: “ERROR: Invalid FreeSurfer license key was found in license file”. I 
tried getting a new license and even borrowed someone else’s license and they 
all came up with the same error. Any ideas?Thanks for your 
help.Sarah_Assistant Professor,University of Nevada, Reno,Department of 
Psychology and Center for Integrative Neuroscience,1664 N. Virginia 
StreetReno, NV 89557-0296Carnegie Mellon University,Department of 
Psychology and Center for the Neural Basis of Cognition,5000 Forbes 
Avenue,Pittsburgh, PA 
15213.___Freesurfer mailing 
listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer___Freesurfer
 mailing 
listfreesur...@nmr.mgh.harvard.eduhttps://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurferamp;data=01%7C01%7Cshaigh%40unr..edu%7C16c5246a561d4631f7bc08d64f3ae949%7C523b4bfc0ebd4c03b2b96f6a17fd31d8%7C1amp;sdata=W1G8vsv2ubqApboTTM9kTHllGoV%2Bc4aX9gC6sW2fTqI%3Damp;reserved=0___Freesurfer
 mailing 
listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard..edu/mailman/listinfo/freesurfer
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] License issue

2018-11-20 Thread Sarah Haigh

External Email - Use Caution

Hi,

I ran the code and the license appeared, but no email address or numbers. These
were the first few lines:
FreeSurfer Software License Agreement ("Agreement")
Version 1.0 (February 2011)

Is this wrong? The rwx settings look correct.

Thanks

Sarah

On Nov 20, 2018, at 2:52 PM, fsbuild
mailto:fsbu...@contbay.com>> wrote:

External Email - Use Caution

Hello Sarah,

If you can bring up a terminal with your freesurfer environment set, then
please try the following commands, i.e.,

$ cd $FREESURFER_HOME
$ cat $FS_LICENSE

Without posting the contents of your license, I think the first line is an
email address, followed by a line with several numbers, followed by 2 lines of
text.

$ ls -l $FS_LICENSE
-rw-r--r--@ 1 userid staff 57 Jan 9 2018 /Users/userid/license.txt

the rw-r-r privileges (644) mean its writeable only by you (which is fine).

- R.

Sarah Haigh
November 20, 2018 at 16:42
External Email - Use Caution

Yes, I set the FreeSurfer home environment and added the license file to that
folder. It is Word readable.

Sarah

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Greve, Douglas N.,Ph.D.
November 20, 2018 at 15:03
did you put it in $FREESURFER_HOME/.license ? Is it world-readable?

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Sarah Haigh
November 20, 2018 at 14:38
External Email - Use Caution

Hello Freesurfers,

Thanks for your help.

Sarah

Assistant Professor,
University of Nevada, Reno,
Department of Psychology and Center for Integrative Neuroscience,
1664 N. Virginia Street
Reno, NV 89557-0296

Carnegie Mellon University,
Department of Psychology and Center for the Neural Basis of Cognition,
5000 Forbes Avenue,
Pittsburgh, PA 15213.

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] License issue

2018-11-20 Thread fsbuild

External Email - Use Caution

Hello Sarah,



If you can bring up a terminal with your freesurfer environment set, then 
please try the following commands, i.e.,



$ cd $FREESURFER_HOME

$ cat $FS_LICENSE


output deleted

Without posting the contents of your license, I think the first line is 
an email address, followed by a line with several numbers, followed by 2 
lines of text.
$ ls -l $FS_LICENSE-rw-r--r--@ 1 userid staff 57 Jan 9 
2018 /Users/userid/license.txt
the rw-r-r privileges (644) mean its writeable only by you (which is fine).
- R.




- R.






Sarah HaighNovember 20, 2018 at 16:42
  External Email - Use Caution

Yes, I set the FreeSurfer home environment and added the license file to that 
folder. It is Word readable.

Sarah



___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Greve, Douglas N.,Ph.D.November 20, 2018 at 15:03
  did you put it in $FREESURFER_HOME/.license ? Is it world-readable?


___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Sarah HaighNovember 20, 2018 at 14:38
  External Email - Use Caution

Hello Freesurfers,

Can
 anyone help with a licensing issue I have? I downloaded Freesurfer the 
other day with a brand new license and got the following message: 
“ERROR: Invalid FreeSurfer license key was found in license file”. I 
tried getting a new license and even borrowed someone else’s license and
 they all came up with the same error. Any ideas?

Thanks for your help.

Sarah

_

Assistant Professor,
University of Nevada, Reno,
Department of Psychology and Center for Integrative Neuroscience,
1664 N. Virginia Street 
Reno, NV 89557-0296

Carnegie Mellon University,
Department of Psychology and Center for the Neural Basis of Cognition,
5000 Forbes Avenue,
Pittsburgh, PA 15213.


___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer





___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] License issue

2018-11-20 Thread Sarah Haigh

External Email - Use Caution

Yes, I set the FreeSurfer home environment and added the license file to that 
folder. It is Word readable.

Sarah

> On Nov 20, 2018, at 12:03 PM, Greve, Douglas N.,Ph.D. 
>  wrote:
> 
> did you put it in $FREESURFER_HOME/.license ? Is it world-readable?
> 
> On 11/20/18 2:38 PM, Sarah Haigh wrote:
>> External Email - Use Caution
>> 
>> Hello Freesurfers,
>> 
>> Can anyone help with a licensing issue I have? I downloaded Freesurfer the 
>> other day with a brand new license and got the following message: “ERROR: 
>> Invalid FreeSurfer license key was found in license file”. I tried getting a 
>> new license and even borrowed someone else’s license and they all came up 
>> with the same error. Any ideas?
>> 
>> Thanks for your help.
>> 
>> Sarah
>> 
>> _
>> 
>> Assistant Professor,
>> University of Nevada, Reno,
>> Department of Psychology and Center for Integrative Neuroscience,
>> 1664 N. Virginia Street
>> Reno, NV 89557-0296
>> 
>> Carnegie Mellon University,
>> Department of Psychology and Center for the Neural Basis of Cognition,
>> 5000 Forbes Avenue,
>> Pittsburgh, PA 15213.
>> 
>> 
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurferdata=01%7C01%7Cshaigh%40unr.edu%7Cea858c97901b46142d8e08d64f2353ad%7C523b4bfc0ebd4c03b2b96f6a17fd31d8%7C1sdata=PhmjMjWMgaaaDPAVQzBnrV5YJ0yAcWUc%2BWMg3VRCBic%3Dreserved=0
> 
> 
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurferdata=01%7C01%7Cshaigh%40unr.edu%7Cea858c97901b46142d8e08d64f2353ad%7C523b4bfc0ebd4c03b2b96f6a17fd31d8%7C1sdata=PhmjMjWMgaaaDPAVQzBnrV5YJ0yAcWUc%2BWMg3VRCBic%3Dreserved=0


___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] License issue

2018-11-20 Thread Greve, Douglas N.,Ph.D.

did you put it in $FREESURFER_HOME/.license ? Is it world-readable?

On 11/20/18 2:38 PM, Sarah Haigh wrote:
>  External Email - Use Caution
>
> Hello Freesurfers,
>
> Can anyone help with a licensing issue I have? I downloaded Freesurfer the 
> other day with a brand new license and got the following message: “ERROR: 
> Invalid FreeSurfer license key was found in license file”. I tried getting a 
> new license and even borrowed someone else’s license and they all came up 
> with the same error. Any ideas?
>
> Thanks for your help.
>
> Sarah
>
> _
>
> Assistant Professor,
> University of Nevada, Reno,
> Department of Psychology and Center for Integrative Neuroscience,
> 1664 N. Virginia Street
> Reno, NV 89557-0296
>
> Carnegie Mellon University,
> Department of Psychology and Center for the Neural Basis of Cognition,
> 5000 Forbes Avenue,
> Pittsburgh, PA 15213.
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] License issue

2018-11-20 Thread Sarah Haigh

External Email - Use Caution

Hello Freesurfers,

Can anyone help with a licensing issue I have? I downloaded Freesurfer the 
other day with a brand new license and got the following message: “ERROR: 
Invalid FreeSurfer license key was found in license file”. I tried getting a 
new license and even borrowed someone else’s license and they all came up with 
the same error. Any ideas?

Thanks for your help.

Sarah

_

Assistant Professor,
University of Nevada, Reno,
Department of Psychology and Center for Integrative Neuroscience,
1664 N. Virginia Street 
Reno, NV 89557-0296

Carnegie Mellon University,
Department of Psychology and Center for the Neural Basis of Cognition,
5000 Forbes Avenue,
Pittsburgh, PA 15213.


___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] FreeSurfer License issue

2018-07-20 Thread Dianne Patterson

External Email - Use Caution

Hi,


Here's what I've learned from my attempts (eventually successful), to run
freesurfer in docker on a mac:



There are three tricks to running the freesurfer *docker* container.

1) You must request a license.txt file from the freesurfer website:
https://surfer.nmr.mgh.harvard.edu/fswiki/License

2) You must bind mount the license file on the outside to license.txt on
the inside of the container (this is just like binding the input small_ds
and outputs directories), e.g.:


>docker run -ti --rm -v
/Volumes/Main/Working/BIDS_TESTING/license.txt:/license.txt:ro -v
/Volumes/Main/Working/BIDS_TESTING/small_ds:/bids_dataset:ro -v
/Volumes/Main/Working/BIDS_TESTING/outputs:/outputs bids/freesurfer
/bids_dataset /outputs participant --license_file /license.txt


3) On the mac, Docker runs in a minimal virtual machine.  By default, this
machine is allowed to access 2 GB of RAM.  recon-all requires more RAM (~4
GB or more) https://surfer.nmr.mgh.harvard.edu/fswiki/SystemRequirements.
See instructions here for increasing the RAM on Docker for Mac:
https://docs.docker.com/docker-for-mac/#advanced


On Fri, Jul 20, 2018 at 1:13 AM Carolina Bonivento <
boniventocarol...@gmail.com> wrote:

> External Email - Use Caution
>
> Apologize, I forgot  to attach the file with the license. Here it is.
>
> Best regards,
>
> Carolina
>
>
>
>
> Il giorno 20 lug 2018, alle ore 10:08, Carolina Bonivento <
> boniventocarol...@gmail.com> ha scritto:
>
> Dear Sir/Madame,
> I recently subscribed the FS license (attached) but when I tried to run
>  the 'recon-all’ (actually one of its steps, i.e. the MRI_ca_register) I
> received the following error message:
>
> *ERROR: Invalid FreeSurfer license key found in license file
> /root/freesurfer/license.txt*
>
> Following some instruction that I got previously, I replaced the .license
> with the license.txt in the $FREESURFER_HOME directory (in my case
> root/freesurfer) but I still get the same error message.
>
> Note that I’m running FreeSurfer through a Docker container running
> Ubuntu14 that is linked to the ‘freesurfer' folder on the' /User/home' of a
> macOS High Sierra (of course, Docker and the freesurfer folder are on the
> same machine). When I filled the license request form I’ve selected
> Linux/Intel as 'Operating System/Platform', as this is the OS of the Docker
> container. Is it possible that the issue is due to this? In that case, can
> I ask for a second license?
>
> Thank you in advance for your attention.
>
> Looking forward to hearing from you, I’m sending you my best regards,
>
> Carolina
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>


-- 
Dianne Patterson, Ph.D.
Research Scientist
d...@email.arizona.edu 
or
dianne...@gmail.com
University of Arizona
Speech and Hearing Science 314
1131 E 2nd Street, Building #71
(Just East of Harvill)
==
If you don't hear back from me (and you expected to),
I blame the University's new SPAM filter.
Please write to my gmail account.
==
Antipiphany: That moment when you realize how little you actually know
==
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] FreeSurfer License issue

2018-07-20 Thread Carolina Bonivento

External Email - Use CautionApologize, I forgot  to attach the file with the license. Here it is.Best regards,CarolinaCarolina Bonivento 
37084
 *Cl5ULwBr1to2
 FSr/.mH1ADRn2
Il giorno 20 lug 2018, alle ore 10:08, Carolina Bonivento  ha scritto:Dear Sir/Madame,I recently subscribed the FS license (attached) but when I tried to run  the 'recon-all’ (actually one of its steps, i.e. the MRI_ca_register) I received the following error message: ERROR: Invalid FreeSurfer license key found in license file /root/freesurfer/license.txtFollowing some instruction that I got previously, I replaced the .license with the license.txt in the $FREESURFER_HOME directory (in my case root/freesurfer) but I still get the same error message.Note that I’m running FreeSurfer through a Docker container running Ubuntu14 that is linked to the ‘freesurfer' folder on the' /User/home' of a macOS High Sierra (of course, Docker and the freesurfer folder are on the same machine). When I filled the license request form I’ve selected Linux/Intel as 'Operating System/Platform', as this is the OS of the Docker container. Is it possible that the issue is due to this? In that case, can I ask for a second license?Thank you in advance for your attention.Looking forward to hearing from you, I’m sending you my best regards,Carolina___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

[Freesurfer] FreeSurfer License issue

2018-07-20 Thread Carolina Bonivento

External Email - Use Caution

Dear Sir/Madame,
I recently subscribed the FS license (attached) but when I tried to run  the 
'recon-all’ (actually one of its steps, i.e. the MRI_ca_register) I received 
the following error message: 

ERROR: Invalid FreeSurfer license key found in license file 
/root/freesurfer/license.txt

Following some instruction that I got previously, I replaced the .license with 
the license.txt in the $FREESURFER_HOME directory (in my case root/freesurfer) 
but I still get the same error message.

Note that I’m running FreeSurfer through a Docker container running Ubuntu14 
that is linked to the ‘freesurfer' folder on the' /User/home' of a macOS High 
Sierra (of course, Docker and the freesurfer folder are on the same machine). 
When I filled the license request form I’ve selected Linux/Intel as 'Operating 
System/Platform', as this is the OS of the Docker container. Is it possible 
that the issue is due to this? In that case, can I ask for a second license?

Thank you in advance for your attention.

Looking forward to hearing from you, I’m sending you my best regards,

Carolina___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

[Freesurfer] License issue

2017-11-05 Thread Danny Deng

Dear FDs,

According to the instructions, I have cut the 4 lines between the “CUT HERE”, 
copy and past the 4 lines into my license.txt file in the home directory to 
freesurfer folder as follow:

---
PART C. MISCELLANEOUS

This Agreement shall be governed by and construed in accordance with
the laws of The Commonwealth of Massachusetts without regard to
principles of conflicts of law. This Agreement shall supercede and
replace any license terms that you may have agreed to previously with
respect to FreeSurfer.

dannytang...@gmail.com
33367
*CL6BxmQcdv6k
FScW2..sWlD9c

However,when I tried to test my installation using the sample-001, it shows the 
error message as follow:

Xues-MacBook-Air:~ DannyDeng$ cp $FREESURFER_HOME/subjects/sample-001.mgz
usage: cp [-R [-H | -L | -P]] [-fi | -n] [-apvX] source_file target_file
   cp [-R [-H | -L | -P]] [-fi | -n] [-apvX] source_file ... 
target_directory
Xues-MacBook-Air:~ DannyDeng$ mri_Convert sample-001.mgz sample-001.nii.gz
mri_convert.bin sample-001.mgz sample-001.nii.gz 
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from sample-001.mgz...
--
ERROR: Invalid FreeSurfer license key found in license file 
/Applications/freesurfer/license.txt
  If you are outside the NMR-Martinos Center,
  go to http://surfer.nmr.mgh.harvard.edu/registration.html to 
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment.
--
Xues-MacBook-Air:~ DannyDeng$ 


Please help. thanks


However
Best Regards,
Danny Deng

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] License issue with qdec

2015-09-22 Thread Lisa S. Pao

Hi everyone,

In response to the questions:

I did not recently upgrade or reinstall.
Other things still run, despite the problem with qdec.
The .license file is valid.

Best,
Lisa

---
Lisa Pao, Ph.D.
Postdoctoral Research Fellow
Division of Child and Adolescent Psychiatry
Columbia University Medical Center
New York State Psychiatric Institute
646-774-5782



Message: 2
Date: Thu, 17 Sep 2015 12:14:14 -0400
From: Douglas N Greve 
<gr...@nmr.mgh.harvard.edu<mailto:gr...@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] License issue with qdec
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Message-ID: 
<55fae6d6.2080...@nmr.mgh.harvard.edu<mailto:55fae6d6.2080...@nmr.mgh.harvard.edu>>
Content-Type: text/plain; charset=windows-1252; format=flowed

did you recently upgrade or reinstall? Does anything else run since you
found this problem? Eg, mri_convert? When you created the .license file,
did you put a valid license key in it?

On 09/17/2015 12:09 PM, Lisa S. Pao wrote:
Hi everyone,

I?m having some issues using qdec. The program runs for about 30
seconds, and then quits with the following error message:

ERROR: FreeSurfer license file /Applications/freesurfer/.license not
found.
 If you are outside the NMR-Martinos Center,
 go to http://surfer.nmr.mgh.harvard.edu to
 get a valid license file (it's free).
 If you are inside the NMR-Martinos Center,
 make sure to source the standard environment.

I?ve been using Freesurfer for over a year now to run recons and use
freeview, so I?m not sure why the error is popping up now. I
definitely have a license, and have successfully used the program (but
not qdec) in the past.

I?ve tried the following fixes without any success:
-renaming the ?license.txt? file to ?license? (without the .txt
extension)
-using terminal to create a file called ?.license? (when I did this
and used ls -a to view all files, I noticed the file was actually
named ?.license.save?)

I?m running freesurfer-i386-apple-darwin11.4.2-stable5-20130514 on an
iMac, OS X Yosemite (10.10.3).

I?d greatly appreciate any suggestions for how to fix this issue.

Thanks!

Best,
Lisa

---
Lisa Pao, Ph.D.
Postdoctoral Research Fellow
Division of Child and Adolescent Psychiatry
Columbia University Medical Center
New York State Psychiatric Institute
646-774-5782





___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu<mailto:gr...@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: 
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/


___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] License issue with qdec

2015-09-17 Thread Douglas N Greve

did you recently upgrade or reinstall? Does anything else run since you 
found this problem? Eg, mri_convert? When you created the .license file, 
did you put a valid license key in it?

On 09/17/2015 12:09 PM, Lisa S. Pao wrote:
> Hi everyone,
>
> I’m having some issues using qdec. The program runs for about 30 
> seconds, and then quits with the following error message:
>
> ERROR: FreeSurfer license file /Applications/freesurfer/.license not 
> found.
>   If you are outside the NMR-Martinos Center,
>   go to http://surfer.nmr.mgh.harvard.edu to
>   get a valid license file (it's free).
>   If you are inside the NMR-Martinos Center,
>   make sure to source the standard environment.
>
> I’ve been using Freesurfer for over a year now to run recons and use 
> freeview, so I’m not sure why the error is popping up now. I 
> definitely have a license, and have successfully used the program (but 
> not qdec) in the past.
>
> I’ve tried the following fixes without any success:
> -renaming the ‘license.txt’ file to ‘license’ (without the .txt 
> extension)
> -using terminal to create a file called ‘.license’ (when I did this 
> and used ls -a to view all files, I noticed the file was actually 
> named ‘.license.save’)
>
> I’m running freesurfer-i386-apple-darwin11.4.2-stable5-20130514 on an 
> iMac, OS X Yosemite (10.10.3).
>
> I’d greatly appreciate any suggestions for how to fix this issue.
>
> Thanks!
>
> Best,
> Lisa
>
> ---
> Lisa Pao, Ph.D.
> Postdoctoral Research Fellow
> Division of Child and Adolescent Psychiatry
> Columbia University Medical Center
> New York State Psychiatric Institute
> 646-774-5782
>
>
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

[Freesurfer] License issue with qdec

2015-09-17 Thread Lisa S. Pao

Hi everyone,

I’m having some issues using qdec. The program runs for about 30 seconds, and 
then quits with the following error message:

ERROR: FreeSurfer license file /Applications/freesurfer/.license not found.
  If you are outside the NMR-Martinos Center,
  go to http://surfer.nmr.mgh.harvard.edu to
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment.

I’ve been using Freesurfer for over a year now to run recons and use freeview, 
so I’m not sure why the error is popping up now. I definitely have a license, 
and have successfully used the program (but not qdec) in the past.

I’ve tried the following fixes without any success:
-renaming the ‘license.txt’ file to ‘license’ (without the .txt extension)
-using terminal to create a file called ‘.license’ (when I did this and used ls 
-a to view all files, I noticed the file was actually named ‘.license.save’)

I’m running freesurfer-i386-apple-darwin11.4.2-stable5-20130514 on an iMac, OS 
X Yosemite (10.10.3).

I’d greatly appreciate any suggestions for how to fix this issue.

Thanks!

Best,
Lisa

---
Lisa Pao, Ph.D.
Postdoctoral Research Fellow
Division of Child and Adolescent Psychiatry
Columbia University Medical Center
New York State Psychiatric Institute
646-774-5782



___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

2013-05-09 Thread Nick Schmansky

Nicola and Nick,

Hi, its Nick (the other Nick :)). This looks like a new issue we haven't
seen before that is specific to opensuse.  Can you try downloading the
file libcrypt.so.1 from this location:

ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/

copy it to your freesurfer/lib dir, then set a lib path prior to
setting-up (sourcing) freesurfer, like this:

setenv FREESURFER_HOME whereever you installed freesurfer
setenv LD_LIBRARY_PATH $FREESURFER_HOME/lib
source $FREESURFER_HOME/SetUpFreeSurfer.csh

this libcrypt lib is from centos6, and i'm thinking that possibly opensuse
implements crypt differently (working theory anyway).

you can confirm that mri_convert is using this new lib by typing:

cd $FREESURFER_HOME/bin
ldd ./mri_convert

and you should see libcrypt in the list with a path to the freesurfer/lib
dir.

Nick


 Hi Nick (Schmansky),

 sorry to jump back in on this thread - I have exactly the same issue
 (license file not valid) on the same OS (and not on others) with *all*
 fs commands. I have tried multiple license files from other working
 installations.

 Is there anything else i can try?

 Thanks a lot

 nicola

 On 5/8/2013 3:09 PM, Nick Schmansky wrote:
 Nick

 Can you email me the .license file that is being used?

 Thanks,

 N.


 On Wed, 2013-05-08 at 13:21 -0500, Nick Jones wrote:
 Hi Nick,

 Truncated the email.  I'm getting a license error for both the
 mri_convert command and the tkmedit command that you provided.  The
 original also yields a license error (no segfault).  You are right, my
 earlier test called tkmedit.bin directly.

 Thanks

 Nick

 On 05/08/2013 12:07 PM, Nick Schmansky wrote:
 Nick,

 Hi, I found what might the source of the problem and posted new
 versions
 of mri_convert and tkmedit.bin to this directory:

 ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/

 before trying the new mri_convert though, can you try the following?

 cd some writable directory
 mri_convert $FREESURFER_HOME/subjects/bert/mri/T1.mgz T1.mgz

 I'm guessing it will segfault or print the license problem.

 Now copy the new mri_convert (from the ftp link above) to the
 freesurfer/bin directory and try again.  It should work.  You can then
 also try the new tkmedit.bin.  Remember to copy the tkmedit.bin to the
 freesurfer/tktools directory and leave freesurfer/bin/tkmedit
 untouched
 (its a wrapper-script that sets-up paths to the tcl/tk/tix/blt libs,
 so
 tkmedit.bin cannot be run directly)

 Thanks,

 Nick







 The information in this e-mail is intended only for the person to whom
 it is
 addressed. If you believe this e-mail was sent to you in error and the
 e-mail
 contains patient information, please contact the Partners Compliance
 HelpLine at
 http://www.partners.org/complianceline . If the e-mail was sent to you
 in error
 but does not contain patient information, please contact the sender and
 properly
 dispose of the e-mail.




___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

2013-05-09 Thread Nicola Toschi

Thanks Nick,

well that did change something... here is what i get now with any fs 
command:

/bin/tcsh: /lib64/libfreebl3.so: version `NSSRAWHASH_3.12.3' not found 
(required by /work2/rootbackup/usr/local/freesurfer/lib/libcrypt.so.1)

Should I update/substitute /lib64/libfreebl3.so al well?

thanks a lot,

Nicola

PS when running ldd ./mri_convert inside the bin dir, I get

not a dynamic executable



On 05/09/2013 06:02 AM, Nick Schmansky wrote:
 Nicola and Nick,

 Hi, its Nick (the other Nick :)). This looks like a new issue we haven't
 seen before that is specific to opensuse.  Can you try downloading the
 file libcrypt.so.1 from this location:

 ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/

 copy it to your freesurfer/lib dir, then set a lib path prior to
 setting-up (sourcing) freesurfer, like this:

 setenv FREESURFER_HOME whereever you installed freesurfer
 setenv LD_LIBRARY_PATH $FREESURFER_HOME/lib
 source $FREESURFER_HOME/SetUpFreeSurfer.csh

 this libcrypt lib is from centos6, and i'm thinking that possibly opensuse
 implements crypt differently (working theory anyway).

 you can confirm that mri_convert is using this new lib by typing:

 cd $FREESURFER_HOME/bin
 ldd ./mri_convert

 and you should see libcrypt in the list with a path to the freesurfer/lib
 dir.

 Nick


 Hi Nick (Schmansky),

 sorry to jump back in on this thread - I have exactly the same issue
 (license file not valid) on the same OS (and not on others) with *all*
 fs commands. I have tried multiple license files from other working
 installations.

 Is there anything else i can try?

 Thanks a lot

 nicola

 On 5/8/2013 3:09 PM, Nick Schmansky wrote:
 Nick

 Can you email me the .license file that is being used?

 Thanks,

 N.


 On Wed, 2013-05-08 at 13:21 -0500, Nick Jones wrote:
 Hi Nick,

 Truncated the email.  I'm getting a license error for both the
 mri_convert command and the tkmedit command that you provided.  The
 original also yields a license error (no segfault).  You are right, my
 earlier test called tkmedit.bin directly.

 Thanks

 Nick

 On 05/08/2013 12:07 PM, Nick Schmansky wrote:
 Nick,

 Hi, I found what might the source of the problem and posted new
 versions
 of mri_convert and tkmedit.bin to this directory:

 ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/

 before trying the new mri_convert though, can you try the following?

 cd some writable directory
 mri_convert $FREESURFER_HOME/subjects/bert/mri/T1.mgz T1.mgz

 I'm guessing it will segfault or print the license problem.

 Now copy the new mri_convert (from the ftp link above) to the
 freesurfer/bin directory and try again.  It should work.  You can then
 also try the new tkmedit.bin.  Remember to copy the tkmedit.bin to the
 freesurfer/tktools directory and leave freesurfer/bin/tkmedit
 untouched
 (its a wrapper-script that sets-up paths to the tcl/tk/tix/blt libs,
 so
 tkmedit.bin cannot be run directly)

 Thanks,

 Nick





 The information in this e-mail is intended only for the person to whom
 it is
 addressed. If you believe this e-mail was sent to you in error and the
 e-mail
 contains patient information, please contact the Partners Compliance
 HelpLine at
 http://www.partners.org/complianceline . If the e-mail was sent to you
 in error
 but does not contain patient information, please contact the sender and
 properly
 dispose of the e-mail.



___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

2013-05-08 Thread Nick Jones

Hi Nick,

I included that just to illustrate there are no cut lines or newlines, it is 
not the information I entered, but rather an obfuscated license file.  The 
license file I'm using works fine on an older version of Opensuse (11.4) and 
the 5.3 BETA, but not the newer 12.3 and 5.3 BETA.

Thanks

Nick

On 05/07/2013 05:06 PM, Nick Schmansky wrote:
 Nick,

 Can you request another license file?  The info in the .license file
 that is shown in your email below does not appear to be valid.  There is
 no record of it in our license system (or more accurately, number 14743
 has different data than that shown).  Was it obtained recently?

 Our current licensing scheme has been used since at least 1999, so I
 think the history of how it came about has been lost.  Changing it now I
 think might skew the stats we've collected over the years.

 Nick


 On Tue, 2013-05-07 at 13:57 -0500, Nick Jones wrote:
 Hi Nick,

 It complains about libtix8.1.8.4.so missing.  I add 
 $FREESURFER_HOME/lib/tcltktixblt/lib/ to the LD_LIBRARY_PATH variable, but 
 it still complains about the license and does not open bert.

 Tried the dev build and 5.3 beta, which also fail at the license.

 Why not remove the requirement and have people agree to a license prior to 
 downloading?  Lots of folks probably enter bogus information into the 
 registration form anyway.
 Just trying to be constructive.

 Thanks very much for your help

 Nick

 On 05/07/2013 12:14 PM, Nick Schmansky wrote:
 Nicola and Nick,

 Can you try the tkmedit.bin found here:

 ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/

 copy it to the freesurfer/tktools directory (the wrapper script
 'tkmedit' in the bin dir calls the binary in the tktools dir).

 I'm hoping the problem you are seeing is the same one that others have
 seen on Fedora 19 and Ubuntu 13 which is fixed for the upcoming 5.3
 release.

 Nick



 On Tue, 2013-05-07 at 12:15 -0400, Nicola Toschi wrote:
 Hi Nick, hi List,

 I have been having the exact same problem (also posted it on this list)
 with every freesurfer version on Opensuse 12.3, and haven't been able to
 sort it out.

 Any luck with it? Any pointers would be highly appreciated.

 Thanks in advance,

 Nicola

 On 5/1/2013 4:42 PM, Nick Jones wrote:
 Hi,

 I've run into a license problem with the latest version of Freesurfer on 
 OpenSuse 12.3. 64 bit.

 FREESURFER_HOME: /usr/freesurfer
 Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0
 Kernel info: Linux 3.7.10-1.1-desktop x86_64

 When running a test:

 /usr/freesurferecho $shell
 /bin/tcsh

 /usr/freesurfersource SetUpFreeSurfer.csh
  freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 
 Setting up environment for FreeSurfer/FS-FAST (and FSL)
 FREESURFER_HOME   /usr/freesurfer
 FSFAST_HOME   /usr/freesurfer/fsfast
 FSF_OUTPUT_FORMAT nii.gz
 SUBJECTS_DIR  /usr/freesurfer/subjects
 MNI_DIR   /usr/freesurfer/mni
 FSL_DIR   /usr/fsl

 /usr/freesurfertkmedit bert orig.mgz
 --
 ERROR: Invalid FreeSurfer license key found in license file 
 /usr/freesurfer/.license
   If you are outside the NMR-Martinos Center,
   go to http://surfer.nmr.mgh.harvard.edu to
   get a valid license file (it's free).
   If you are inside the NMR-Martinos Center,
   make sure to source the standard environment.
 --

 /usr/freesurfercat .license
 hotm...@hotmail.com
 14743
 *C5.JPynIz8mt
 /usr/freesurfer

 This license file has been obfuscated.

 /usr/freesurferll -a .license
 -rw-r--r-- 1 root root 46 Apr 29 09:38 .license

 /usr/freesurfercat VERSION
 freesurfer-x86_64-unknown-linux-gnu-stable5-20130226

 /usr/freesurferzypper targetos
 openSUSE-12.3-x86_64

 /usr/freesurferuname -a
 Linux adams 3.7.10-1.1-desktop #1 SMP PREEMPT Thu Feb 28 15:06:29 UTC 
 2013 (82d3f21) x86_64 x86_64 x86_64 GNU/Linux

 Name: tcl
 Version: 8.5.12-3.1.3
 Name: tk
 Version: 8.5.12-3.1.1

 Thanks to anyone who can provide some insight or workaround.  I'm also 
 curious if anyone knows the reasoning behind using this type of license 
 mechanism, as opposed to agreeing to a license prior to downloading, like 
 FSL or 3DSlicer?

 Nick
 ___
 Freesurfer mailing list
 Freesurfer@nmr.mgh.harvard.edu
 https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


 The information in this e-mail is intended only for the person to whom it 
 is
 addressed. If you believe this e-mail was sent to you in error and the 
 e-mail
 contains patient information, please contact the Partners Compliance 
 HelpLine at
 http://www.partners.org/complianceline . If the e-mail was sent to you in 
 error
 but does not contain patient information, please contact the sender and 
 properly
 dispose of the e-mail.


 ___
 Freesurfer

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

2013-05-08 Thread Nick Schmansky

Nick,

Hi, I found what might the source of the problem and posted new versions
of mri_convert and tkmedit.bin to this directory:

ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/

before trying the new mri_convert though, can you try the following?

cd some writable directory
mri_convert $FREESURFER_HOME/subjects/bert/mri/T1.mgz T1.mgz

I'm guessing it will segfault or print the license problem.

Now copy the new mri_convert (from the ftp link above) to the
freesurfer/bin directory and try again.  It should work.  You can then
also try the new tkmedit.bin.  Remember to copy the tkmedit.bin to the
freesurfer/tktools directory and leave freesurfer/bin/tkmedit untouched
(its a wrapper-script that sets-up paths to the tcl/tk/tix/blt libs, so
tkmedit.bin cannot be run directly)

Thanks,

Nick



On Wed, 2013-05-08 at 11:52 -0500, Nick Jones wrote:
 Hi Nick,
 
 I included that just to illustrate there are no cut lines or newlines, it 
 is not the information I entered, but rather an obfuscated license file.  The 
 license file I'm using works fine on an older version of Opensuse (11.4) and 
 the 5.3 BETA, but not the newer 12.3 and 5.3 BETA.
 
 Thanks
 
 Nick
 
 On 05/07/2013 05:06 PM, Nick Schmansky wrote:
  Nick,
 
  Can you request another license file?  The info in the .license file
  that is shown in your email below does not appear to be valid.  There is
  no record of it in our license system (or more accurately, number 14743
  has different data than that shown).  Was it obtained recently?
 
  Our current licensing scheme has been used since at least 1999, so I
  think the history of how it came about has been lost.  Changing it now I
  think might skew the stats we've collected over the years.
 
  Nick
 
 
  On Tue, 2013-05-07 at 13:57 -0500, Nick Jones wrote:
  Hi Nick,
 
  It complains about libtix8.1.8.4.so missing.  I add 
  $FREESURFER_HOME/lib/tcltktixblt/lib/ to the LD_LIBRARY_PATH variable, but 
  it still complains about the license and does not open bert.
 
  Tried the dev build and 5.3 beta, which also fail at the license.
 
  Why not remove the requirement and have people agree to a license prior to 
  downloading?  Lots of folks probably enter bogus information into the 
  registration form anyway.
  Just trying to be constructive.
 
  Thanks very much for your help
 
  Nick
 
  On 05/07/2013 12:14 PM, Nick Schmansky wrote:
  Nicola and Nick,
 
  Can you try the tkmedit.bin found here:
 
  ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/
 
  copy it to the freesurfer/tktools directory (the wrapper script
  'tkmedit' in the bin dir calls the binary in the tktools dir).
 
  I'm hoping the problem you are seeing is the same one that others have
  seen on Fedora 19 and Ubuntu 13 which is fixed for the upcoming 5.3
  release.
 
  Nick
 
 
 
  On Tue, 2013-05-07 at 12:15 -0400, Nicola Toschi wrote:
  Hi Nick, hi List,
 
  I have been having the exact same problem (also posted it on this list)
  with every freesurfer version on Opensuse 12.3, and haven't been able to
  sort it out.
 
  Any luck with it? Any pointers would be highly appreciated.
 
  Thanks in advance,
 
  Nicola
 
  On 5/1/2013 4:42 PM, Nick Jones wrote:
  Hi,
 
  I've run into a license problem with the latest version of Freesurfer 
  on OpenSuse 12.3. 64 bit.
 
  FREESURFER_HOME: /usr/freesurfer
  Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0
  Kernel info: Linux 3.7.10-1.1-desktop x86_64
 
  When running a test:
 
  /usr/freesurferecho $shell
  /bin/tcsh
 
  /usr/freesurfersource SetUpFreeSurfer.csh
   freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 
  Setting up environment for FreeSurfer/FS-FAST (and FSL)
  FREESURFER_HOME   /usr/freesurfer
  FSFAST_HOME   /usr/freesurfer/fsfast
  FSF_OUTPUT_FORMAT nii.gz
  SUBJECTS_DIR  /usr/freesurfer/subjects
  MNI_DIR   /usr/freesurfer/mni
  FSL_DIR   /usr/fsl
 
  /usr/freesurfertkmedit bert orig.mgz
  --
  ERROR: Invalid FreeSurfer license key found in license file 
  /usr/freesurfer/.license
If you are outside the NMR-Martinos Center,
go to http://surfer.nmr.mgh.harvard.edu to
get a valid license file (it's free).
If you are inside the NMR-Martinos Center,
make sure to source the standard environment.
  --
 
  /usr/freesurfercat .license
  hotm...@hotmail.com
  14743
  *C5.JPynIz8mt
  /usr/freesurfer
 
  This license file has been obfuscated.
 
  /usr/freesurferll -a .license
  -rw-r--r-- 1 root root 46 Apr 29 09:38 .license
 
  /usr/freesurfercat VERSION
  freesurfer-x86_64-unknown-linux-gnu-stable5-20130226
 
  /usr/freesurferzypper targetos
  openSUSE-12.3-x86_64
 
  /usr/freesurferuname -a
  Linux adams 3.7.10-1.1-desktop #1 SMP PREEMPT Thu Feb 28 15:06:29 UTC 
  2013 (82d3f21)

[Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

2013-05-08 Thread Nick Jones

Hi Nick,

Truncated the email.  I'm getting a license error for both the mri_convert 
command and the tkmedit command that you provided.  The original also yields a 
license error (no segfault).  You are right, my earlier test called tkmedit.bin 
directly.

Thanks

Nick

On 05/08/2013 12:07 PM, Nick Schmansky wrote:
 Nick,

 Hi, I found what might the source of the problem and posted new versions
 of mri_convert and tkmedit.bin to this directory:

 ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/

 before trying the new mri_convert though, can you try the following?

 cd some writable directory
 mri_convert $FREESURFER_HOME/subjects/bert/mri/T1.mgz T1.mgz

 I'm guessing it will segfault or print the license problem.

 Now copy the new mri_convert (from the ftp link above) to the
 freesurfer/bin directory and try again.  It should work.  You can then
 also try the new tkmedit.bin.  Remember to copy the tkmedit.bin to the
 freesurfer/tktools directory and leave freesurfer/bin/tkmedit untouched
 (its a wrapper-script that sets-up paths to the tcl/tk/tix/blt libs, so
 tkmedit.bin cannot be run directly)

 Thanks,

 Nick



___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

2013-05-08 Thread Nick Schmansky

Nick

Can you email me the .license file that is being used?

Thanks,

N.


On Wed, 2013-05-08 at 13:21 -0500, Nick Jones wrote:
 Hi Nick,
 
 Truncated the email.  I'm getting a license error for both the mri_convert 
 command and the tkmedit command that you provided.  The original also yields 
 a license error (no segfault).  You are right, my earlier test called 
 tkmedit.bin directly.
 
 Thanks
 
 Nick
 
 On 05/08/2013 12:07 PM, Nick Schmansky wrote:
  Nick,
 
  Hi, I found what might the source of the problem and posted new versions
  of mri_convert and tkmedit.bin to this directory:
 
  ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/
 
  before trying the new mri_convert though, can you try the following?
 
  cd some writable directory
  mri_convert $FREESURFER_HOME/subjects/bert/mri/T1.mgz T1.mgz
 
  I'm guessing it will segfault or print the license problem.
 
  Now copy the new mri_convert (from the ftp link above) to the
  freesurfer/bin directory and try again.  It should work.  You can then
  also try the new tkmedit.bin.  Remember to copy the tkmedit.bin to the
  freesurfer/tktools directory and leave freesurfer/bin/tkmedit untouched
  (its a wrapper-script that sets-up paths to the tcl/tk/tix/blt libs, so
  tkmedit.bin cannot be run directly)
 
  Thanks,
 
  Nick
 
 
 
 
 


___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

2013-05-08 Thread Nicola Toschi

Hi Nick (Schmansky),

sorry to jump back in on this thread - I have exactly the same issue 
(license file not valid) on the same OS (and not on others) with *all* 
fs commands. I have tried multiple license files from other working 
installations.

Is there anything else i can try?

Thanks a lot

nicola

On 5/8/2013 3:09 PM, Nick Schmansky wrote:
 Nick

 Can you email me the .license file that is being used?

 Thanks,

 N.


 On Wed, 2013-05-08 at 13:21 -0500, Nick Jones wrote:
 Hi Nick,

 Truncated the email.  I'm getting a license error for both the mri_convert 
 command and the tkmedit command that you provided.  The original also yields 
 a license error (no segfault).  You are right, my earlier test called 
 tkmedit.bin directly.

 Thanks

 Nick

 On 05/08/2013 12:07 PM, Nick Schmansky wrote:
 Nick,

 Hi, I found what might the source of the problem and posted new versions
 of mri_convert and tkmedit.bin to this directory:

 ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/

 before trying the new mri_convert though, can you try the following?

 cd some writable directory
 mri_convert $FREESURFER_HOME/subjects/bert/mri/T1.mgz T1.mgz

 I'm guessing it will segfault or print the license problem.

 Now copy the new mri_convert (from the ftp link above) to the
 freesurfer/bin directory and try again.  It should work.  You can then
 also try the new tkmedit.bin.  Remember to copy the tkmedit.bin to the
 freesurfer/tktools directory and leave freesurfer/bin/tkmedit untouched
 (its a wrapper-script that sets-up paths to the tcl/tk/tix/blt libs, so
 tkmedit.bin cannot be run directly)

 Thanks,

 Nick







 The information in this e-mail is intended only for the person to whom it is
 addressed. If you believe this e-mail was sent to you in error and the e-mail
 contains patient information, please contact the Partners Compliance HelpLine 
 at
 http://www.partners.org/complianceline . If the e-mail was sent to you in 
 error
 but does not contain patient information, please contact the sender and 
 properly
 dispose of the e-mail.

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

2013-05-07 Thread Nicola Toschi

Hi Nick, hi List,

I have been having the exact same problem (also posted it on this list) 
with every freesurfer version on Opensuse 12.3, and haven't been able to 
sort it out.

Any luck with it? Any pointers would be highly appreciated.

Thanks in advance,

Nicola

On 5/1/2013 4:42 PM, Nick Jones wrote:
 Hi,

 I've run into a license problem with the latest version of Freesurfer on 
 OpenSuse 12.3. 64 bit.

 FREESURFER_HOME: /usr/freesurfer
 Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0
 Kernel info: Linux 3.7.10-1.1-desktop x86_64

 When running a test:

 /usr/freesurferecho $shell
 /bin/tcsh

 /usr/freesurfersource SetUpFreeSurfer.csh
  freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 
 Setting up environment for FreeSurfer/FS-FAST (and FSL)
 FREESURFER_HOME   /usr/freesurfer
 FSFAST_HOME   /usr/freesurfer/fsfast
 FSF_OUTPUT_FORMAT nii.gz
 SUBJECTS_DIR  /usr/freesurfer/subjects
 MNI_DIR   /usr/freesurfer/mni
 FSL_DIR   /usr/fsl

 /usr/freesurfertkmedit bert orig.mgz
 --
 ERROR: Invalid FreeSurfer license key found in license file 
 /usr/freesurfer/.license
 If you are outside the NMR-Martinos Center,
 go to http://surfer.nmr.mgh.harvard.edu to
 get a valid license file (it's free).
 If you are inside the NMR-Martinos Center,
 make sure to source the standard environment.
 --

 /usr/freesurfercat .license
 hotm...@hotmail.com
 14743
 *C5.JPynIz8mt
 /usr/freesurfer

 This license file has been obfuscated.

 /usr/freesurferll -a .license
 -rw-r--r-- 1 root root 46 Apr 29 09:38 .license

 /usr/freesurfercat VERSION
 freesurfer-x86_64-unknown-linux-gnu-stable5-20130226

 /usr/freesurferzypper targetos
 openSUSE-12.3-x86_64

 /usr/freesurferuname -a
 Linux adams 3.7.10-1.1-desktop #1 SMP PREEMPT Thu Feb 28 15:06:29 UTC 2013 
 (82d3f21) x86_64 x86_64 x86_64 GNU/Linux

 Name: tcl
 Version: 8.5.12-3.1.3
 Name: tk
 Version: 8.5.12-3.1.1

 Thanks to anyone who can provide some insight or workaround.  I'm also 
 curious if anyone knows the reasoning behind using this type of license 
 mechanism, as opposed to agreeing to a license prior to downloading, like FSL 
 or 3DSlicer?

 Nick
 ___
 Freesurfer mailing list
 Freesurfer@nmr.mgh.harvard.edu
 https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


 The information in this e-mail is intended only for the person to whom it is
 addressed. If you believe this e-mail was sent to you in error and the e-mail
 contains patient information, please contact the Partners Compliance HelpLine 
 at
 http://www.partners.org/complianceline . If the e-mail was sent to you in 
 error
 but does not contain patient information, please contact the sender and 
 properly
 dispose of the e-mail.


___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

2013-05-07 Thread Nick Schmansky

Nicola and Nick,

Can you try the tkmedit.bin found here:

ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/

copy it to the freesurfer/tktools directory (the wrapper script
'tkmedit' in the bin dir calls the binary in the tktools dir).  

I'm hoping the problem you are seeing is the same one that others have
seen on Fedora 19 and Ubuntu 13 which is fixed for the upcoming 5.3
release.

Nick



On Tue, 2013-05-07 at 12:15 -0400, Nicola Toschi wrote:
 Hi Nick, hi List,
 
 I have been having the exact same problem (also posted it on this list) 
 with every freesurfer version on Opensuse 12.3, and haven't been able to 
 sort it out.
 
 Any luck with it? Any pointers would be highly appreciated.
 
 Thanks in advance,
 
 Nicola
 
 On 5/1/2013 4:42 PM, Nick Jones wrote:
  Hi,
 
  I've run into a license problem with the latest version of Freesurfer on 
  OpenSuse 12.3. 64 bit.
 
  FREESURFER_HOME: /usr/freesurfer
  Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0
  Kernel info: Linux 3.7.10-1.1-desktop x86_64
 
  When running a test:
 
  /usr/freesurferecho $shell
  /bin/tcsh
 
  /usr/freesurfersource SetUpFreeSurfer.csh
   freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 
  Setting up environment for FreeSurfer/FS-FAST (and FSL)
  FREESURFER_HOME   /usr/freesurfer
  FSFAST_HOME   /usr/freesurfer/fsfast
  FSF_OUTPUT_FORMAT nii.gz
  SUBJECTS_DIR  /usr/freesurfer/subjects
  MNI_DIR   /usr/freesurfer/mni
  FSL_DIR   /usr/fsl
 
  /usr/freesurfertkmedit bert orig.mgz
  --
  ERROR: Invalid FreeSurfer license key found in license file 
  /usr/freesurfer/.license
  If you are outside the NMR-Martinos Center,
  go to http://surfer.nmr.mgh.harvard.edu to
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment.
  --
 
  /usr/freesurfercat .license
  hotm...@hotmail.com
  14743
  *C5.JPynIz8mt
  /usr/freesurfer
 
  This license file has been obfuscated.
 
  /usr/freesurferll -a .license
  -rw-r--r-- 1 root root 46 Apr 29 09:38 .license
 
  /usr/freesurfercat VERSION
  freesurfer-x86_64-unknown-linux-gnu-stable5-20130226
 
  /usr/freesurferzypper targetos
  openSUSE-12.3-x86_64
 
  /usr/freesurferuname -a
  Linux adams 3.7.10-1.1-desktop #1 SMP PREEMPT Thu Feb 28 15:06:29 UTC 2013 
  (82d3f21) x86_64 x86_64 x86_64 GNU/Linux
 
  Name: tcl
  Version: 8.5.12-3.1.3
  Name: tk
  Version: 8.5.12-3.1.1
 
  Thanks to anyone who can provide some insight or workaround.  I'm also 
  curious if anyone knows the reasoning behind using this type of license 
  mechanism, as opposed to agreeing to a license prior to downloading, like 
  FSL or 3DSlicer?
 
  Nick
  ___
  Freesurfer mailing list
  Freesurfer@nmr.mgh.harvard.edu
  https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
 
 
  The information in this e-mail is intended only for the person to whom it is
  addressed. If you believe this e-mail was sent to you in error and the 
  e-mail
  contains patient information, please contact the Partners Compliance 
  HelpLine at
  http://www.partners.org/complianceline . If the e-mail was sent to you in 
  error
  but does not contain patient information, please contact the sender and 
  properly
  dispose of the e-mail.
 
 
 ___
 Freesurfer mailing list
 Freesurfer@nmr.mgh.harvard.edu
 https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
 
 


___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

2013-05-07 Thread Nick Jones

Hi Nick,

It complains about libtix8.1.8.4.so missing.  I add 
$FREESURFER_HOME/lib/tcltktixblt/lib/ to the LD_LIBRARY_PATH variable, but it 
still complains about the license and does not open bert.

Tried the dev build and 5.3 beta, which also fail at the license.

Why not remove the requirement and have people agree to a license prior to 
downloading?  Lots of folks probably enter bogus information into the 
registration form anyway.
Just trying to be constructive.

Thanks very much for your help

Nick

On 05/07/2013 12:14 PM, Nick Schmansky wrote:
 Nicola and Nick,

 Can you try the tkmedit.bin found here:

 ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/

 copy it to the freesurfer/tktools directory (the wrapper script
 'tkmedit' in the bin dir calls the binary in the tktools dir).

 I'm hoping the problem you are seeing is the same one that others have
 seen on Fedora 19 and Ubuntu 13 which is fixed for the upcoming 5.3
 release.

 Nick



 On Tue, 2013-05-07 at 12:15 -0400, Nicola Toschi wrote:
 Hi Nick, hi List,

 I have been having the exact same problem (also posted it on this list)
 with every freesurfer version on Opensuse 12.3, and haven't been able to
 sort it out.

 Any luck with it? Any pointers would be highly appreciated.

 Thanks in advance,

 Nicola

 On 5/1/2013 4:42 PM, Nick Jones wrote:
 Hi,

 I've run into a license problem with the latest version of Freesurfer on 
 OpenSuse 12.3. 64 bit.

 FREESURFER_HOME: /usr/freesurfer
 Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0
 Kernel info: Linux 3.7.10-1.1-desktop x86_64

 When running a test:

 /usr/freesurferecho $shell
 /bin/tcsh

 /usr/freesurfersource SetUpFreeSurfer.csh
  freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 
 Setting up environment for FreeSurfer/FS-FAST (and FSL)
 FREESURFER_HOME   /usr/freesurfer
 FSFAST_HOME   /usr/freesurfer/fsfast
 FSF_OUTPUT_FORMAT nii.gz
 SUBJECTS_DIR  /usr/freesurfer/subjects
 MNI_DIR   /usr/freesurfer/mni
 FSL_DIR   /usr/fsl

 /usr/freesurfertkmedit bert orig.mgz
 --
 ERROR: Invalid FreeSurfer license key found in license file 
 /usr/freesurfer/.license
  If you are outside the NMR-Martinos Center,
  go to http://surfer.nmr.mgh.harvard.edu to
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment.
 --

 /usr/freesurfercat .license
 hotm...@hotmail.com
 14743
 *C5.JPynIz8mt
 /usr/freesurfer

 This license file has been obfuscated.

 /usr/freesurferll -a .license
 -rw-r--r-- 1 root root 46 Apr 29 09:38 .license

 /usr/freesurfercat VERSION
 freesurfer-x86_64-unknown-linux-gnu-stable5-20130226

 /usr/freesurferzypper targetos
 openSUSE-12.3-x86_64

 /usr/freesurferuname -a
 Linux adams 3.7.10-1.1-desktop #1 SMP PREEMPT Thu Feb 28 15:06:29 UTC 2013 
 (82d3f21) x86_64 x86_64 x86_64 GNU/Linux

 Name: tcl
 Version: 8.5.12-3.1.3
 Name: tk
 Version: 8.5.12-3.1.1

 Thanks to anyone who can provide some insight or workaround.  I'm also 
 curious if anyone knows the reasoning behind using this type of license 
 mechanism, as opposed to agreeing to a license prior to downloading, like 
 FSL or 3DSlicer?

 Nick
 ___
 Freesurfer mailing list
 Freesurfer@nmr.mgh.harvard.edu
 https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


 The information in this e-mail is intended only for the person to whom it is
 addressed. If you believe this e-mail was sent to you in error and the 
 e-mail
 contains patient information, please contact the Partners Compliance 
 HelpLine at
 http://www.partners.org/complianceline . If the e-mail was sent to you in 
 error
 but does not contain patient information, please contact the sender and 
 properly
 dispose of the e-mail.


 ___
 Freesurfer mailing list
 Freesurfer@nmr.mgh.harvard.edu
 https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer




___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

2013-05-07 Thread Nicola Toschi

Hi Nick,

sorry - I should have been more specific.

I get the same error with *any* FS command or script (recon-all, 
mri_glmfit), so in effect ever since the upgrade I am not able to use FS 
at all.

The tkmedit patch you posted is only missing a library on my system 
though, which I can fix - so maybe that's a pointer towards the root of 
the problem?

Thanks again,

Nicola


On 5/7/2013 2:57 PM, Nick Jones wrote:
 Hi Nick,

 It complains about libtix8.1.8.4.so missing.  I add 
 $FREESURFER_HOME/lib/tcltktixblt/lib/ to the LD_LIBRARY_PATH variable, 
 but it still complains about the license and does not open bert.

 Tried the dev build and 5.3 beta, which also fail at the license.

 Why not remove the requirement and have people agree to a license 
 prior to downloading?  Lots of folks probably enter bogus information 
 into the registration form anyway.
 Just trying to be constructive.

 Thanks very much for your help

 Nick

 On 05/07/2013 12:14 PM, Nick Schmansky wrote:
 Nicola and Nick,

 Can you try the tkmedit.bin found here:

 ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/
  


 copy it to the freesurfer/tktools directory (the wrapper script
 'tkmedit' in the bin dir calls the binary in the tktools dir).

 I'm hoping the problem you are seeing is the same one that others have
 seen on Fedora 19 and Ubuntu 13 which is fixed for the upcoming 5.3
 release.

 Nick



 On Tue, 2013-05-07 at 12:15 -0400, Nicola Toschi wrote:
 Hi Nick, hi List,

 I have been having the exact same problem (also posted it on this list)
 with every freesurfer version on Opensuse 12.3, and haven't been 
 able to
 sort it out.

 Any luck with it? Any pointers would be highly appreciated.

 Thanks in advance,

 Nicola

 On 5/1/2013 4:42 PM, Nick Jones wrote:
 Hi,

 I've run into a license problem with the latest version of 
 Freesurfer on OpenSuse 12.3. 64 bit.

 FREESURFER_HOME: /usr/freesurfer
 Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0
 Kernel info: Linux 3.7.10-1.1-desktop x86_64

 When running a test:

 /usr/freesurferecho $shell
 /bin/tcsh

 /usr/freesurfersource SetUpFreeSurfer.csh
  freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 
 Setting up environment for FreeSurfer/FS-FAST (and FSL)
 FREESURFER_HOME   /usr/freesurfer
 FSFAST_HOME   /usr/freesurfer/fsfast
 FSF_OUTPUT_FORMAT nii.gz
 SUBJECTS_DIR  /usr/freesurfer/subjects
 MNI_DIR   /usr/freesurfer/mni
 FSL_DIR   /usr/fsl

 /usr/freesurfertkmedit bert orig.mgz
 -- 

 ERROR: Invalid FreeSurfer license key found in license file 
 /usr/freesurfer/.license
  If you are outside the NMR-Martinos Center,
  go to http://surfer.nmr.mgh.harvard.edu to
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment.
 -- 


 /usr/freesurfercat .license
 hotm...@hotmail.com
 14743
 *C5.JPynIz8mt
 /usr/freesurfer

 This license file has been obfuscated.

 /usr/freesurferll -a .license
 -rw-r--r-- 1 root root 46 Apr 29 09:38 .license

 /usr/freesurfercat VERSION
 freesurfer-x86_64-unknown-linux-gnu-stable5-20130226

 /usr/freesurferzypper targetos
 openSUSE-12.3-x86_64

 /usr/freesurferuname -a
 Linux adams 3.7.10-1.1-desktop #1 SMP PREEMPT Thu Feb 28 15:06:29 
 UTC 2013 (82d3f21) x86_64 x86_64 x86_64 GNU/Linux

 Name: tcl
 Version: 8.5.12-3.1.3
 Name: tk
 Version: 8.5.12-3.1.1

 Thanks to anyone who can provide some insight or workaround.  I'm 
 also curious if anyone knows the reasoning behind using this type 
 of license mechanism, as opposed to agreeing to a license prior to 
 downloading, like FSL or 3DSlicer?

 Nick
 ___
 Freesurfer mailing list
 Freesurfer@nmr.mgh.harvard.edu
 https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


 The information in this e-mail is intended only for the person to 
 whom it is
 addressed. If you believe this e-mail was sent to you in error and 
 the e-mail
 contains patient information, please contact the Partners 
 Compliance HelpLine at
 http://www.partners.org/complianceline . If the e-mail was sent to 
 you in error
 but does not contain patient information, please contact the sender 
 and properly
 dispose of the e-mail.


 ___
 Freesurfer mailing list
 Freesurfer@nmr.mgh.harvard.edu
 https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer





___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Freesurfer License issue/bug on Opensuse 12.3

2013-05-01 Thread Nick Jones

Hi,

I've run into a license problem with the latest version of Freesurfer on 
OpenSuse 12.3. 64 bit.

FREESURFER_HOME: /usr/freesurfer
Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0
Kernel info: Linux 3.7.10-1.1-desktop x86_64

When running a test:

/usr/freesurferecho $shell
/bin/tcsh

/usr/freesurfersource SetUpFreeSurfer.csh
 freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME   /usr/freesurfer
FSFAST_HOME   /usr/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR  /usr/freesurfer/subjects
MNI_DIR   /usr/freesurfer/mni
FSL_DIR   /usr/fsl

/usr/freesurfertkmedit bert orig.mgz
--
ERROR: Invalid FreeSurfer license key found in license file 
/usr/freesurfer/.license
   If you are outside the NMR-Martinos Center,
   go to http://surfer.nmr.mgh.harvard.edu to
   get a valid license file (it's free).
   If you are inside the NMR-Martinos Center,
   make sure to source the standard environment.
--

/usr/freesurfercat .license
hotm...@hotmail.com
14743
*C5.JPynIz8mt
/usr/freesurfer

This license file has been obfuscated.

/usr/freesurferll -a .license
-rw-r--r-- 1 root root 46 Apr 29 09:38 .license

/usr/freesurfercat VERSION
freesurfer-x86_64-unknown-linux-gnu-stable5-20130226

/usr/freesurferzypper targetos
openSUSE-12.3-x86_64

/usr/freesurferuname -a
Linux adams 3.7.10-1.1-desktop #1 SMP PREEMPT Thu Feb 28 15:06:29 UTC 2013 
(82d3f21) x86_64 x86_64 x86_64 GNU/Linux

Name: tcl
Version: 8.5.12-3.1.3
Name: tk
Version: 8.5.12-3.1.1

Thanks to anyone who can provide some insight or workaround.  I'm also curious 
if anyone knows the reasoning behind using this type of license mechanism, as 
opposed to agreeing to a license prior to downloading, like FSL or 3DSlicer?

Nick
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] license issue with the updated version

Re: [Freesurfer] license issue with the updated version

Re: [Freesurfer] license issue with the updated version

[Freesurfer] license issue with the updated version

Re: [Freesurfer] License issue

Re: [Freesurfer] License issue

[Freesurfer] License issue

Re: [Freesurfer] License issue {Disarmed}

Re: [Freesurfer] License issue

Re: [Freesurfer] License issue

Re: [Freesurfer] License issue

Re: [Freesurfer] License issue

Re: [Freesurfer] License issue

[Freesurfer] License issue

Re: [Freesurfer] FreeSurfer License issue

Re: [Freesurfer] FreeSurfer License issue

[Freesurfer] FreeSurfer License issue

[Freesurfer] License issue

Re: [Freesurfer] License issue with qdec

Re: [Freesurfer] License issue with qdec

[Freesurfer] License issue with qdec

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

[Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

[Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

[Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

Re: [Freesurfer] UNRESOLVED: Re: Freesurfer License issue/bug on Opensuse 12.3

[Freesurfer] Freesurfer License issue/bug on Opensuse 12.3

33 matches

Site Navigation

Mail list logo

Footer information