/
<https://www.mosbri.eu/training/basic-level-schools/bls2/>*
or contact directly the course organizers for more information
zdenek.lan...@ibt.cas.cz (Scientific Organizer)
magdalena.schneider...@ibt.cas.cz (Course Admin)
Jan Dohnalek
MoB-IBT centre of MOSBRI
--
Jan Dohnalek, Ph.D
Ins
in this course
is: Thursday 29th February 2024.
Jan Dohnalek
MoB-IBT centre of MOSBRI
--
Jan Dohnalek, Ph.D
Institute of Biotechnology
Academy of Sciences of the Czech Republic
Biocev
Prumyslova 595
252 50 Vestec near Prague
Czech Republic
Tel. +420 325 873 758
, etc., who want to learn a technique enabling high
throughput screening for dynamic parameters of biochemical interactions on
a single molecule level.
The deadline for submission of an application to participate in this course
is: Thursday 29th February 2024.
Jan Dohnalek
MoB-IBT centre of MOSBRI
unsubscribe from the CCP4BB list, click the following link:
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Institute of Biotechnology
Academy of Sciences of the Czech Republic
Biocev
Prumyslova 595
252
.
--
Jan Dohnalek, Ph.D
Institute of Biotechnology
Academy of Sciences of the Czech Republic
Biocev
Prumyslova 595
252 50 Vestec near Prague
Czech Republic
Tel. +420 325 873 758
To unsubscribe from the CCP4BB list, click
to us ...
Avoid FedEX!!!
Jan Dohnalek
On Fri, Jul 28, 2023 at 5:16 AM Dr. Kevin M Jude wrote:
> My first adventure in international crystallography is off to an
> inauspicious start. On Monday, I sent a dry shipper “overnight” from
> California to Saskatchewan, but it has b
t justified.”
>>
>> The problem is when a company with billions of $$s develops a method and
>> blasts it everywhere - the message is so pervasive…
>>
>> *Question: I*s there a canned consensus paragraph that one can add with
>> references to grants with structura
ttps://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1
>>
>
> --
>
> To unsubscribe from the CCP4BB list, click the following link:
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Jan Dohnalek, Ph.D
Institute of Biot
Cambridge
> Cambridge Institute for Medical Research Tel: +44 1223 336500
> The Keith Peters Building
> Hills Road E-mail:
> rj...@cam.ac.uk
> Cambridge CB2 0XY, U.K.
> www-structmed.cimr.cam.ac.uk
>
>
> ###
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Jan Dohnalek, Ph.D
Institute of Biotechnology
Academy of Sciences of the Czech Republic
Biocev
Prumyslova 595
252
convinced would be the right ones.
Now, Jan's question triggered mine ..
Anybody else had similar experience with such ligands?
Jan Dohnalek
On Fri, Jul 29, 2022 at 11:54 AM Jan Stransky
wrote:
> Hi all,
>
> while validating X-ray structure using Molprobity (web service), we got
> sy
###
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> mailing list hosted by www.jiscmail.ac.uk, term
;*
We appreciate your answers
The survey will close on 4 March 2022
*Feel free to contact us at mosbri-d...@ibt.cas.cz *
Jan Dohnálek & Jan Stránský
for the team of
Standards for data archiving & exploitation
MOSBRI
--
Jan Dohnalek, Ph.D
Institute of Biotechnology
Academy of Science
e your answers
The survey will close on 4 March 2022
*Feel free to contact us at mosbri-d...@ibt.cas.cz *
Jan Dohnálek & Jan Stránský
for the team of
Standards for data archiving & exploitation
MOSBRI
--
Jan Dohnalek, Ph.D
Institute of Biotechnology
Academy of Sciences of the Czech R
---
>>
>> To unsubscribe from the CCP4BB list, click the following link:
>> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1
>>
>
> --
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> To
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>
> This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a
> mailing list hosted by www.jiscmail.ac.uk, terms & conditions are
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uctures?
>
> BRs
>
> Sam
>
> --
>
> To unsubscribe from the CCP4BB list, click the following link:
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Jan Dohnalek, Ph.D
Institute of Biotechnology
Academy of Sciences of the Czech Re
roject leader to decide such things, as Eleanor has stated, they
> should absolutely be applauded for that.
>
> After all, as Frank said, we do this for the science, and it shouldn’t
> need to include personal sacrifice.
>
> Nick
>
> On 22 Jan 2021, at 11:18, Pearce, N.M. (Nick) wrote:
&g
h other lab
>> members. Applicants should include a short statement of research
>> goals, CV
>> and three references with their application.
>>
>>
>>
>>
>> To unsubscribe from the
We also recently encountered this way of coordinates treatment - did not
find it useful but just left it as it was (life has other more exciting
adventures waiting ...).
I strongly support the solution suggested by Luca,
A nice day to all,
Jan Dohnalek
On Fri, Dec 4, 2020 at 8:48 AM Luca
;
> Vaheh
>
>
>
> *From:* CCP4 bulletin board * On Behalf Of *Jan
> Dohnalek
> *Sent:* Tuesday, September 8, 2020 8:01 AM
> *To:* CCP4BB@JISCMAIL.AC.UK
> *Subject:* Re: [ccp4bb] metal coordination at low resolution - restraints
>
>
>
> Hi Garib,
>
&
Hi Garib,
>
> On 8 Sep 2020, at 11:39, Jan Dohnalek wrote:
>
> These are structural.
>
>
> Are they tetrahedral or octahedral? From the list of neighbours they do
> not look like tetrahedral. Some of them do look like octahedral.
>
> They are involved in reaction
>> > I noticed that in phenix it is possible to generate restraints with
>> readyset but
>> > I'd like to work with refmac.
>> >
>> > Many thanks for your suggestions.
>> >
>> > Cheers,
>> > Anna
&
of
> our customs declarations for Switzerland. That was then the last Dewar we
> sent by FEDEX.
>
>
>
> Best,
>
> Herman
>
>
>
> *Von:* CCP4 bulletin board *Im Auftrag von *Jan
> Dohnalek
> *Gesendet:* Donnerstag, 25. Juni 2020 08:34
> *An:* CCP4BB@JIS
>
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1
>
--
Jan Dohnalek, Ph.D
Institute of Biotechnology
Academy of S
*, and no financial
contribution will be requested for the measurement/service.
Stay safe
The CMS team
http://www.ibt.cas.cz/core-facility/CMS/index.html
--
Jan Dohnalek, Ph.D
Institute of Biotechnology
Academy of Sciences of the Czech Republic
Biocev
Prumyslova 595
252 50 Vestec near Prague
Czech
mbridge Institute for Medical Research Tel: + 44 1223 336500
> The Keith Peters Building Fax: + 44 1223
> 336827
> Hills Road E-mail:
> rj...@cam.ac.uk
> Cambridge CB2 0XY, U.K.
> www-structmed.cimr.cam.ac.uk
>
>
>
> --
&
serious H-clash is checked, otherwise mostly
not.
Jan Dohnalek
On Fri, Aug 17, 2018 at 6:27 PM Firdous Tarique
wrote:
> Hello everyone.
>
> I have a basic question. When a validation report of a coordinate is
> generated we often come across a term known as "Too-Close Co
://www.biocev.eu/event/instruct-ciisb-fragment-screening-course/
or the attached file for details.
*Apply before February 9 2018 to frederic.velli...@ibt.cas.cz
<frederic.velli...@ibt.cas.cz>.*
Jan Dohnalek
Institute of Biotechnology, Biocev
Centre of Molecular Structure
--
Jan Dohnalek
fkristallamt.org/
>
> b...@hofkristallamt.org
>
> +1 925 209 7429 <(925)%20209-7429>
>
> +43 767 571 0536 <+43%207675%20710536>
>
> --
>
> :(){ :|: & };:
>
> -
are losing
contrast quite a bit between the really serious issues on ... all the other.
Jan Dohnalek
On Wed, Nov 30, 2016 at 2:33 AM, dusan turk <dusan.t...@ijs.si> wrote:
> Guys,
>
> I have a two issues to add here:
>
> 1. RSZS validation does not tolerate chain IDs longer
.
The man who walks alone will find himself in places where no one has
been before.
-
--
Jan Dohnalek, Ph.D
Institute of Biotechnology
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam
questions via
email.
Jan Dohnalek
Guarantor of CMS, Biocev
Coordinator of Central facilities
--
Jan Dohnalek, Ph.D
Institute of Biotechnology
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206 Praha 6
Czech Republic
Tel: +420 296 809 340
to teach in my lectures). Therefore also an easy
and uniformly reliable evaluation of ion sites in the PDB is not possible
(too many details to be included in the analysis which are not part of the
PDB record). In many cases though it is fairly easy to say wrong ion.
Jan Dohnalek
IBT Prague
On Fri
not be protein
diffraction. I never saw so strange images like this. Does anyone know
what it is? Is it a kind of salt diffraction?
Thank you very much
Chang
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206 Praha 6
phased with a molecular replacement
solution?
Thank you very much in advance.
--
Israel Sanchez Fernandez PhD
Ramakrishnan-lab
MRC Laboratory of Molecular Biology,
Hills Road, Cambridge, CB2 0QH, UK
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences
Data from Crysalis in mtz format are not merged I think - you have to go
through the scale and merge step in Scala first ...
Jan Dohnalek
On Tue, Jun 26, 2012 at 11:21 PM, Steiner, Roberto
roberto.stei...@kcl.ac.uk wrote:
Don't know where the exact problem is. However, it is definitely
is in the system - the 64 bit version though.
Anybody knows the way out?
Jan Dohnalek
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206 Praha 6
Czech Republic
Tel: +420 296 809 340
Fax: +420 296 809 410
http://www.cnb.csic.es/~mjvanraaij
On 25 Apr 2012, at 09:41, Jan Dohnalek wrote:
There have been other manipulations with user-input values. We could not
input solvent content 83% for 3cg8 (the real value!!!) as being out of the
allowed range.
The resulting value in the PDB is NULL
/ligand, the total atoms of protein/water/ligand,
the average b-factor of protein/water/ligand, the number of residues which
have alternative side chians, and so on.
Thank you.
King regards,
Wenhe
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech
Apologies - the limiting date for PhD title is different, as stated here:
The applicant has received PhD degree after March 28, 2008.
Jan Dohnalek
IMC Prague
On Sun, Feb 26, 2012 at 9:52 PM, Jan Dohnalek dohnalek...@gmail.com wrote:
DEADLINE APPROACHING!
Our group has been involved
/aktuality.htm?id=97
The deadline for full applications is February 29!
Jan Dohnalek
IMC Prague
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206 Praha 6
Czech Republic
Tel: +420 296 809 390
Fax: +420 296 809 410
, fixed term, 3 years, starting 1st
July 2012, EU funded via the Czech Ministry of Education.
Please, send your expression of interest via e-mail as soon as possible to
myself at dohnalek...@gmail.com. You will receive further details necessary
for a full application.
--
Jan Dohnalek, Ph.D
compression format for our type of data - our data sets
have some very typical repetitive features so they can be very likely
compressed as a whole set without loosing information (differential
compression in the series) but this needs experts ..
Jan Dohnalek
On Tue, Nov 8, 2011 at 8:19 AM, Miguel
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206 Praha 6
Czech Republic
Tel: +420 296 809 390
Fax: +420 296 809 410
wrote:
The deposited R-free sets in the PDB are quite frequently 'unfree' or the
wrong set was deposited (checking this is one of the recommendations in the
VTF report in Structure). So at the moment you would probably get away with
depositing an unfree R-free set ;)
--
Jan Dohnalek, Ph.D
ideas?
Jan
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206 Praha 6
Czech Republic
Tel: +420 296 809 390
Fax: +420 296 809 410
. This enzyme
also is dimer according to gel filtration.
Could anyone ellaborate on this please, if they feel like they have the
time...
Cheers
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206 Praha 6
Czech Republic
is biologically relevant.
I wish we had a method that delivers a reliable answer regarding the real
state of any protein studied...
Jan
On Thu, Sep 1, 2011 at 8:41 AM, Ethan Merritt merr...@u.washington.eduwrote:
On Wednesday, 31 August 2011, Jan Dohnalek wrote:
Wasn't the original question
Chris Morris
chris.mor...@stfc.ac.uk
Tel: +44 1925 603689 Fax: +44 1925 603825
Mobile: 07921-717915
http://pims.instruct-fp7.eu/
STFC, Daresbury Lab, Daresbury, Warrington, UK, WA4 4AD
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech
Dear all,
my ccp4 interface 6.1.3 became REALLY slow in response on a new i7 PC with
Fedora core 15
2.6.38.8-35.fc15.x86_64 .
Any ideas where to go from here?
Jan Dohnalek
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
Was a SELinux issue.
Jan Dohnalek
On Thu, Jul 21, 2011 at 1:44 PM, Jan Dohnalek dohnalek...@gmail.com wrote:
Dear all,
my ccp4 interface 6.1.3 became REALLY slow in response on a new i7 PC with
Fedora core 15
2.6.38.8-35.fc15.x86_64 .
Any ideas where to go from here?
Jan Dohnalek
. But if they are not, they are among the strongest
diffracting 10% of the expected number of solvent atoms. I have
reasonable doubt that they are all waters. Heck, based on my
assumptions, many of them probably ARE NOT water.
I welcome your opinions.
Wolfram Tempel
--
Jan Dohnalek, Ph.D
Institute of Macromolecular
Medical Scientist Training Program
cel: 773.608.9185
email: j-kell...@northwestern.edu
***
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206 Praha 6
Czech Republic
Tel: +420 296
not investigate much further as most
of the time use of two or three versions gave us a good picture of what's
going on ..probably a feature which would disappear with newer versions
anyway.
What's the version of Refmac you use, Petr?
Jan Dohnalek
On Thu, May 26, 2011 at 12:11 PM, Petr Kolenko kole
and participants status, etc. can be found at:
http://www.imc.cas.cz/unesco/index.html
as well as instructions regarding conditions and applications.
Jan Dohnalek
IMC Prague
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206
Would anybody offer an older crystal cooling system to go?
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206 Praha 6
Czech Republic
Tel: +420 296 809 390
Fax: +420 296 809 410
(profit) margins would be nominal?
Is your assessment of very low margins based on assumed very high costs?
Jack
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206 Praha 6
Czech Republic
Tel: +420 296 809 390
Fax
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206 Praha 6
Czech Republic
Tel: +420 296 809 390
Fax: +420 296 809 410
lab: 847.491.2438
cel: 773.608.9185
email: j-kell...@northwestern.edu
***
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206 Praha 6
Czech Republic
Tel: +420 296 809 390
Fax
not mean robotic setups by this ..
Jan Dohnalek, IMC Prague
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206 Praha 6
Czech Republic
Tel: +420 296 809 390
Fax: +420 296 809 410
Scientist Training Program
Dallos Laboratory
F. Searle 1-240
2240 Campus Drive
Evanston IL 60208
lab: 847.491.2438
cel: 773.608.9185
email: j-kell...@northwestern.edu
***
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
the LINK records newly created
for these atoms.
The actual distances look pretty much as if they were restrained ...
Is there a way to make Refmac ignore these links?
Jan Dohnalek
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho
Problem solved.
One must also switch to the make sugar NO keyword. Otherwise Refmac tries
to use the discovered sugar and ion as if it was sugar-peptide bond.
Jan Dohnalek
On Mon, Feb 1, 2010 at 2:52 PM, Jan Dohnalek dohnalek...@gmail.com wrote:
Dear all
I understand that when I use
)?
Any help is highly appreciated!
Thank you in advance,
Wulf
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Heyrovskeho nam. 2
16206 Praha 6
Czech Republic
Tel: +420 296 809 390
Fax: +420 296 809 410
Dear all,
we have seen again with the 5.5.0102 version that water O or Fe ion
are not held on the crystallographic axis automatically.
What should we do except using possibly the restrain keyword?
Jan Dohnalek
--
Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences
.
Jan Dohnalek, Institute of Macromolecular Chemistry, Prague, Tel: +420 296809390
Ondrej Vanek, Institute of Microbiology, Prague
Workshop organizers
DiscussionWorkshoponEukaryoticExpression_Prague26Oct2009.pdf
Description: Adobe PDF document
provide a limited assistance with finding your hotel accommodation in
Prague.
Jan Dohnalek, Institute of Macromolecular Chemistry, Prague, Tel: +420
296809390
Ondrej Vanek, Institute of Microbiology, Prague
Workshop organizers
DiscussionWorkshoponEukaryoticExpression_Prague26Oct2009_preliminary.pdf
--
==
Mr. Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Laboratory of Structural Analysis of Molecules
Heyrovskeho nam. 2
16206 Prague 6
Tel: +420 296809390
Fax: +420 296809410
http://protein.awardspace.com/
==
This is a reminder - the application deadline is approaching - 24th
February.
Jan Dohnalek
A two-day workshop focused on both the basics and the current
development in macromolecular
single crystal structure refinement techniques will be held in Prague on
April 3-4 2009.
The workshop
an e-mail to myself (Jan
Dohnalek, cc: dusk...@imc.cas.cz) containing
a motivation letter (within the e-mail message is OK), a letter of
support from your supervisor or head of group, and a short professional
CV (one page).
It should be clear from your documents why participation in such
workshop
their crystals to really behave like solids (stability, localization of
disordered regions, etc.)
no need for cryoprotection and it is hard to make them ...
Jan Dohnalek
IMC Prague
Jayashankar wrote:
Here we are dealing with two different state of chemistry,
solid state and solution state, If one
.
I have tried moving to various Linux versions (64bit,32bit, var. levels
of Fedora or RHEL)
Any ideas?
Jan Dohnalek
--
==
Mr. Jan Dohnalek, Ph.D
Institute of Macromolecular Chemistry
Academy of Sciences of the Czech Republic
Laboratory of Structural
We miss the MSD target service a lot. Is there a real reason why it's gone?
Jan Dohnalek
Eleanor Dodson wrote:
Thwe MSD target service has gone, and that was the way I created oca
files comparing sequences?
Is there another web site which will give back the same format?
Eleanor
We are thinking about getting the Oryx8 robot (Douglas Instruments) for
crystallisation experiments.
Is anyone out there with any kind of experience with these?
Jan Dohnalek
IMC Prague
expression of interest explaining
the reason for participation, and a letter of support from their group
or laboratory head. The applications should be send by e-mail to Sarit
Goren [EMAIL PROTECTED])or to Jan Dohnalek ([EMAIL PROTECTED]) as
soon as possible.
The participants have to fund their travel
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