ill generate SQL dumps of arbitrary size...
What news on that work, Alex?
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nt:7 about having a student work on it.
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. Are they in Heron? If yes, where they are?
Can anybody from the medicalinformatics team answer these?
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on meds separately
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in HERON (without specifying a
modifier) you should be including patients who ever had an order recorded
in the Epic system for the selected medication(s) whether or not a
dispense was recorded.
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edcdcb9ac85d notation may refer to MultiSiteDev
for context.''
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Tee hee ...
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beats me to it:
- [http://listserv.kumc.edu/pipermail/gpc-dev/2014q4/000638.html PCORnet
CDM v2.0 - Draft for Review and Feedback]
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Great
e from Epic clarity data?
Would you please share your SQL code? (or point me/us to it, if you
already have)
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nd RX_TYPE, similar to Procedures, as it supports
multiple standards.
Anyone else have thoughts?
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t sure whether our concerns were relayed to the DSSNI TF. Do
you have a handy way to check?
Maybe it doesn't much matter, but it would be nice to know whether they
have already considered this input.
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exist
for patients at our sites.
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result; you
might give it a try.
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this ticket, which seems opaque to me unless I am missing a
definition that the group decided upon earlier in the LOINC ontology
process.
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. If they do well, I
expect that would be compelling evidence that this is done.
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is a "Create new
view" button. Is it straightforward to make a usable view?
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here] (by clicking on the "2014AA" you can get a navigable/browsable
hierarchy) and expand out the LOINCPARTS section to browse. Is that what
you're looking for?
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volume] in Serum or Plasma".
And I wonder if there's a straightforward way to get nicer labels like
that throughout.
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we might swap those names around in the i2b2
ontology/metadata tables.
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_
e
link to the site specifically for the Bioportal-to-i2b2 translations:
http://i2b2.bioontology.org/
And here's the link to the Bioportal API tool:
https://community.i2b2.org/wiki/display/NCBO/NCBO+Ontology+Tools
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track this on the regular
Tuesday calls, for now?
Hubert, please give us an update on your progress.
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in i2b2.
I wonder how we'll integrate this with the [https://bitbucket.org/DanC
/pcornet-dm pcornet-dm scripts] that generate our CDM metadata. Do you
plan to update the scripts?
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f Jim Campbell.
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/b14948170b242fa5c6e9c9d9b1b834ed8022ac33 b14948170b24/pcornet-
dm]
It's not quite in the form that I need for generating i2b2 metadata, so I
haven't merged this `cdm2x` branch.
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screencast (including some mis-steps setting up the VM network).
Perhaps I'll ask on tomorrow's call about times to try getting together
again for screen-sharing.
Meanwhile, anybody want to give it a try?
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with pgadmin3 tool so the database is running correctly. I'm
connecting as user postgres
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all ::1/128 ident
}}}
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trust
hostall all 141.0.0.0/32trust
hostall all ::1/128 ident
}}}
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lhost heron]#
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80
}}}
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I wonder why I didn't have to do that. You'd think that we were running
**exactly** the same bits. You're definitely running i2b2vmware-1703a.zip
Version: 1.7.03a?
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ge there if you like, but the lack of it shouldn't
stop anything from working.
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, this time with the pg_hba.conf mod first
before the installation .
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]#
}}}
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Comment (by gkowalski):
Really webclient.d.ts ? not webclient.d.js ?
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to this data builder stuff;
it's is a separate project now. See ticket:134#comment:5
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ttp://www.typescriptlang.org/ typescript].
Probably dead code now.
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from /var/www/html/webclient/js-
i2b2/cells/plugins/fsm/DFBuilder/tool_widgets_orig.js
and it worked .
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t;Endocrine
disor@13:50:45 [11-4-2014] [demo] [PATIENTSET_5]", "patient_set": 5,
"concepts": {"keys": ["i2b2_DIAG\\i2b2\\Diagnoses\\Endocrine disorders
(240-259)\\"], "names": ["Endocrine disorders"]}}[root@localho
username = params['username']
KeyError: 'username'
[root@localhost cdr2edc]#
}}}
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ey're
authenticated. Use the one in the `/var/log/data_builder/queue` directory.
I'm baffled by `target pattern contains no %`.
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| Keywords:
Blocked By: 109 | Blocking:
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separating 2.x work out to reduce scope of #109
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summary should change. I'm not inspired with a better summary just now,
though.
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7;m closing this to put it on the group agenda.
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o I'm re-opening this.
Hubert, we're standing by for you to share the SQL.
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.. I'm not sure whether our concerns were relayed to the DSSNI TF.
I gather Russ has taken this up with the PCORNet steering committee.
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for that design.
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ese facts should be refreshed daily to maintain accuracy.
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answered your question?
Jim Campbell
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of Nov 6 ticket:64#comment:26) doesn't seem
to include the results under "UNMC: Encounters". Do you plan to continue
working in that direction?
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sues
>
> Have I answered your question?
>
> Jim Campbell
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oduction
workflow at KUMC.
George has the ball to provide whatever revisions to BuilderSaga seem
worthwhile for documentation.
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roughly the same
way the targets `i2b2_vm_deploy.mk` are, since those targets are known to
result in a working system.
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if you would like additional
clarification.
Thanks,
Laurel
From: Phillip Reeder [phillip.ree...@utsouthwestern.edu]
Sent: Wednesday, November 12, 2014 2:13 PM
To: gpc-dev@listserv.kumc.edu; campb...@unmc.edu; Dan Connolly
Cc: gpc-...@listserv.kuc.edu
S
ng from GPC terms to CDM
terms (#145), so the choice between Unknown and Final will go there. I
suppose it would map GPC's "Billing Diagnosis" top level modifier to
"Final".
That's what I can think of for requirements. More on the other topics
separately...
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p.s. Thanks for the thorough review. Clearly my 10 sided die knew what it
was doing when it picked you!
more on other issues separately...
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ling diagnosis
data to HERON.
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ke it would match Encounter Diagnoses. Could be good to define
now, if the goal is to incorporate health plans in the future.
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d
on your main branch soon?
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in Babel yet
because we haven't finished the deployment but I'll have an updated
diagnosis ontology in December.
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fusion on this topic.
>>> I'll add other comments to separate topics as well.
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ke a significant amount of
effort on the Cerner/CMH side to implement this proposed structure of
modifiers.
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: 127
Blocking: |
-+---
Comment (by bos):
Yes, there is no reason not to merge them, but I've got to resolve my
"merge with ancestor" issue.
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ale
* status: reopened => assigned
Comment:
Justin volunteered 11 Nov (notes: #12) to try to reproduce Hubert's work.
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the problem list is a collection of modifiers in the Diagnosis
Hierarchy:
> - Problem status
>- Active
>- Deleted
>- Resolved
>
> p.s. thanks for the notes; more on meds separately
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esn’t drive workflow or billing it’s often unused.
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Greater Plains Network - Informatics
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URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/198>
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: | Blocked By:
Blocking: |
---+---
Changes (by campbell):
* owner: dconnolly => campbell
* status: new => assigned
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gpc-infor
query?id=38%2C53%2C65%2C71%2C121%2C129%2C130>
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vey (KeyGoalTracking#bc-survey) are in
flux, and in some versions, deploying the data builder at each site is
critical path. So conservatively, I'm moving this to that milestone.
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Campbell is reviewing my categories to ensure that they are in-line
with a clinician’s perspective. Based on Jim’s feedback, I will refine
and issue a testable code set to Hubert.
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t URL:
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r within
the spreadsheet and give some feedback.
DC: Hubert, Nathan flip coins to load into Babel
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