Re: [gpc-informatics] #56: shareable synthetic test data sets: Epic clarity, i2b2, NAACCR, ...

2014-10-06 Thread GPC Informatics
ill generate SQL dumps of arbitrary size... What news on that work, Alex? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/56#comment:19> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics

Re: [gpc-informatics] #158: usable view of LOINC lab terms

2014-10-06 Thread GPC Informatics
: | Blocked By: Blocking: 68 | -+ Changes (by dconnolly): * milestone: => data-domains2 -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:3> gpc-informat

Re: [gpc-informatics] #56: shareable synthetic test data sets: Epic clarity, i2b2, NAACCR, ...

2014-10-06 Thread GPC Informatics
nt:7 about having a student work on it. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/56#comment:20> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc

Re: [gpc-informatics] #164: PopMedNet node at UTHSCSA

2014-10-07 Thread GPC Informatics
:| Blocked By: Blocking:| --+- Changes (by dconnolly): * cc: gpc-dev@… (removed) * cc: gpc-dev@… (added) -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/164#comment:4> gpc-informatics <http://informatics.gpcne

Re: [gpc-informatics] #31: data elements for ALS cohort characterization

2014-10-10 Thread GPC Informatics
. Are they in Heron? If yes, where they are? Can anybody from the medicalinformatics team answer these? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/31#comment:21> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network -

Re: [gpc-informatics] #31: data elements for ALS cohort characterization

2014-10-13 Thread GPC Informatics
ttp://informatics.gpcnetwork.org/trac/Project/ticket/31#comment:22> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #31: data elements for ALS cohort characterization

2014-10-13 Thread GPC Informatics
on meds separately -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/31#comment:23> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listser

Re: [gpc-informatics] #31: data elements for ALS cohort characterization

2014-10-13 Thread GPC Informatics
in HERON (without specifying a modifier) you should be including patients who ever had an order recorded in the Epic system for the selected medication(s) whether or not a dispense was recorded. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/31#comment:24&g

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-10-14 Thread GPC Informatics
edcdcb9ac85d notation may refer to MultiSiteDev for context.'' -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:40> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-10-15 Thread GPC Informatics
-- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:41> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-10-15 Thread GPC Informatics
7#comment:42> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-10-15 Thread GPC Informatics
annel]. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:43> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://

[gpc-informatics] #178: determine whether last.visit is the last fulfilled visit or the last scheduled visit

2014-10-15 Thread GPC Informatics
: <http://informatics.gpcnetwork.org/trac/Project/ticket/178> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-10-16 Thread GPC Informatics
ttp://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:44> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-10-16 Thread GPC Informatics
: Keywords:| Blocked By: 134 Blocking: 119 | --+ Comment (by gkowalski): Tee hee ... -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:45> gpc-informatics

Re: [gpc-informatics] #109: represent PCORI CDM terminology as i2b2 metadata

2014-10-17 Thread GPC Informatics
beats me to it: - [http://listserv.kumc.edu/pipermail/gpc-dev/2014q4/000638.html PCORnet CDM v2.0 - Draft for Review and Feedback] -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/109#comment:21> gpc-informatics <http://informatics.gpcnetwork.org/> Great

Re: [gpc-informatics] #178: determine whether last.visit is the last fulfilled visit or the last scheduled visit

2014-10-17 Thread GPC Informatics
e from Epic clarity data? Would you please share your SQL code? (or point me/us to it, if you already have) -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/178#comment:1> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Net

Re: [gpc-informatics] #157: CDM 2.x review: outpatient medication dispense etc.

2014-10-17 Thread GPC Informatics
ork.org/trac/Project/ticket/157#comment:6> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #157: CDM 2.x review: outpatient medication dispense etc.

2014-10-17 Thread GPC Informatics
nd RX_TYPE, similar to Procedures, as it supports multiple standards. Anyone else have thoughts? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/157#comment:7> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains

Re: [gpc-informatics] #157: CDM 2.x review: outpatient medication dispense etc.

2014-10-17 Thread GPC Informatics
t sure whether our concerns were relayed to the DSSNI TF. Do you have a handy way to check? Maybe it doesn't much matter, but it would be nice to know whether they have already considered this input. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/157#commen

Re: [gpc-informatics] #157: CDM 2.x review: outpatient medication dispense etc.

2014-10-21 Thread GPC Informatics
exist for patients at our sites. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/157#comment:9> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@

Re: [gpc-informatics] #178: determine whether last.visit is the last fulfilled visit or the last scheduled visit

2014-10-21 Thread GPC Informatics
Component: data-stds | Resolution: Keywords: | Blocked By: Blocking: | ---+ Changes (by dconnolly): * owner: hhickman => huhickman -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/178#comment:

Re: [gpc-informatics] #109: represent PCORI CDM terminology as i2b2 metadata

2014-10-21 Thread GPC Informatics
g/trac/Project/ticket/109#comment:22> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

[gpc-informatics] #182: Complete LOINC standardization of CDM V1 and share metadata with GPC

2014-10-21 Thread GPC Informatics
ttp://informatics.gpcnetwork.org/trac/Project/ticket/182> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-10-21 Thread GPC Informatics
result; you might give it a try. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:47> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing

Re: [gpc-informatics] #158: usable view of LOINC lab terms

2014-10-22 Thread GPC Informatics
this ticket, which seems opaque to me unless I am missing a definition that the group decided upon earlier in the LOINC ontology process. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:4> gpc-informatics <http://informatics.gpcnetwork.org/>

Re: [gpc-informatics] #158: usable view of LOINC lab terms

2014-10-22 Thread GPC Informatics
. If they do well, I expect that would be compelling evidence that this is done. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:5> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___

Re: [gpc-informatics] #158: usable view of LOINC lab terms

2014-10-22 Thread GPC Informatics
is a "Create new view" button. Is it straightforward to make a usable view? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:6> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics

Re: [gpc-informatics] #158: usable view of LOINC lab terms

2014-10-22 Thread GPC Informatics
here] (by clicking on the "2014AA" you can get a navigable/browsable hierarchy) and expand out the LOINCPARTS section to browse. Is that what you're looking for? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:7> gpc-informatics <http:

Re: [gpc-informatics] #158: usable view of LOINC lab terms

2014-10-22 Thread GPC Informatics
volume] in Serum or Plasma". And I wonder if there's a straightforward way to get nicer labels like that throughout. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:8> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains

Re: [gpc-informatics] #158: usable view of LOINC lab terms

2014-10-22 Thread GPC Informatics
we might swap those names around in the i2b2 ontology/metadata tables. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:9> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics _

Re: [gpc-informatics] #158: usable view of LOINC lab terms

2014-10-22 Thread GPC Informatics
e link to the site specifically for the Bioportal-to-i2b2 translations: http://i2b2.bioontology.org/ And here's the link to the Bioportal API tool: https://community.i2b2.org/wiki/display/NCBO/NCBO+Ontology+Tools -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/1

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-10-24 Thread GPC Informatics
BuilderSaga#QuickStart for instructions. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:48> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing

Re: [gpc-informatics] #158: usable view of LOINC lab terms

2014-10-27 Thread GPC Informatics
mment:11> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #178: determine whether last.visit is the last fulfilled visit or the last scheduled visit

2014-10-27 Thread GPC Informatics
track this on the regular Tuesday calls, for now? Hubert, please give us an update on your progress. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/178#comment:3> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network -

Re: [gpc-informatics] #109: represent PCORI CDM terminology as i2b2 metadata

2014-10-27 Thread GPC Informatics
in i2b2. I wonder how we'll integrate this with the [https://bitbucket.org/DanC /pcornet-dm pcornet-dm scripts] that generate our CDM metadata. Do you plan to update the scripts? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/109#comment:23> gpc-inf

Re: [gpc-informatics] #178: determine whether last.visit is the last fulfilled visit or the last scheduled visit

2014-10-28 Thread GPC Informatics
f Jim Campbell. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/178#comment:4> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@lists

Re: [gpc-informatics] #182: Complete LOINC standardization of CDM V1 and share metadata with GPC

2014-10-28 Thread GPC Informatics
| -+- Changes (by dconnolly): * owner: hickman => huhickman * status: new => assigned -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/182#comment:3> gpc-infor

Re: [gpc-informatics] #109: represent PCORI CDM terminology as i2b2 metadata

2014-10-29 Thread GPC Informatics
/b14948170b242fa5c6e9c9d9b1b834ed8022ac33 b14948170b24/pcornet- dm] It's not quite in the form that I need for generating i2b2 metadata, so I haven't merged this `cdm2x` branch. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/109#comment:24> gpc-informatics <http://informatics.gpcne

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-03 Thread GPC Informatics
screencast (including some mis-steps setting up the VM network). Perhaps I'll ask on tomorrow's call about times to try getting together again for screen-sharing. Meanwhile, anybody want to give it a try? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#co

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
with pgadmin3 tool so the database is running correctly. I'm connecting as user postgres -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:50> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Netw

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
all ::1/128 ident }}} -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:51> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
trust hostall all 141.0.0.0/32trust hostall all ::1/128 ident }}} -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:52> gpc-informatics <http://informatics.gpcne

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
lhost heron]# -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:53> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
80 }}} -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:54> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.k

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
I wonder why I didn't have to do that. You'd think that we were running **exactly** the same bits. You're definitely running i2b2vmware-1703a.zip Version: 1.7.03a? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:55&g

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
ge there if you like, but the lack of it shouldn't stop anything from working. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:56> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
, this time with the pg_hba.conf mod first before the installation . -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:57> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
]# }}} -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:58> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://lists

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
: Keywords:| Blocked By: 134, 179 Blocking: 119 | --+ Comment (by gkowalski): Really webclient.d.ts ? not webclient.d.js ? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:59&g

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
to this data builder stuff; it's is a separate project now. See ticket:134#comment:5 -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:60> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains N

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
ttp://www.typescriptlang.org/ typescript]. Probably dead code now. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:61> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev maili

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
from /var/www/html/webclient/js- i2b2/cells/plugins/fsm/DFBuilder/tool_widgets_orig.js and it worked . -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:62> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
t;Endocrine disor@13:50:45 [11-4-2014] [demo] [PATIENTSET_5]", "patient_set": 5, "concepts": {"keys": ["i2b2_DIAG\\i2b2\\Diagnoses\\Endocrine disorders (240-259)\\"], "names": ["Endocrine disorders"]}}[root@localho

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-04 Thread GPC Informatics
username = params['username'] KeyError: 'username' [root@localhost cdr2edc]# }}} -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:64> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics __

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-05 Thread GPC Informatics
ey're authenticated. Use the one in the `/var/log/data_builder/queue` directory. I'm baffled by `target pattern contains no %`. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:65> gpc-informatics <http://informatics.gpcnetwork.org/> Greater P

[gpc-informatics] #191: represent PCORI CDM 2.x terminology as i2b2 metadata

2014-11-06 Thread GPC Informatics
| Keywords: Blocked By: 109 | Blocking: ---+-- separating 2.x work out to reduce scope of #109 -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/191> gpc-informatics <http://informatics.gpcnetwork.org/> Gr

Re: [gpc-informatics] #145: transform (ETL) GPC i2b2 data to PCORNet CDM (was: transform i2b2 query results to PCORNet CDM)

2014-11-06 Thread GPC Informatics
summary should change. I'm not inspired with a better summary just now, though. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/145#comment:12> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics __

Re: [gpc-informatics] #31: data elements for ALS cohort characterization

2014-11-07 Thread GPC Informatics
ttp://informatics.gpcnetwork.org/trac/Project/ticket/31#comment:25> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

[gpc-informatics] Batch modify: #68, #102, #120, #157, #158, #103, #77, #155

2014-11-07 Thread GPC Informatics
58%2C103%2C77%2C155> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #186: Querying age by numerical constraints

2014-11-07 Thread GPC Informatics
7;m closing this to put it on the group agenda. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/186#comment:1> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___

Re: [gpc-informatics] #186: Querying age by numerical constraints

2014-11-07 Thread GPC Informatics
ent:2> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #186: Querying age by numerical constraints

2014-11-07 Thread GPC Informatics
o I'm re-opening this. Hubert, we're standing by for you to share the SQL. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/186#comment:3> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics _

Re: [gpc-informatics] #157: CDM 2.x review: outpatient medication dispense etc.

2014-11-10 Thread GPC Informatics
.. I'm not sure whether our concerns were relayed to the DSSNI TF. I gather Russ has taken this up with the PCORNet steering committee. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/157#comment:11> gpc-informatics <http://informatics.gpcnetwork.org/>

Re: [gpc-informatics] #182: Complete LOINC standardization of CDM V1 and share metadata with GPC

2014-11-10 Thread GPC Informatics
ket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/182#comment:4> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.k

Re: [gpc-informatics] #178: determine whether last.visit is the last fulfilled visit or the last scheduled visit

2014-11-10 Thread GPC Informatics
for that design. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/178#comment:5> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listser

Re: [gpc-informatics] #186: Querying age by numerical constraints

2014-11-10 Thread GPC Informatics
ese facts should be refreshed daily to maintain accuracy. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/186#comment:5> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #178: determine whether last.visit is the last fulfilled visit or the last scheduled visit

2014-11-11 Thread GPC Informatics
ttp://informatics.gpcnetwork.org/trac/Project/ticket/178#comment:6> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #178: determine whether last.visit is the last fulfilled visit or the last scheduled visit

2014-11-11 Thread GPC Informatics
answered your question? Jim Campbell -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/178#comment:7> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing

Re: [gpc-informatics] #178: determine whether last.visit is the last fulfilled visit or the last scheduled visit

2014-11-12 Thread GPC Informatics
: data-stds | Resolution: Keywords: | Blocked By: 155 Blocking: | ---+ Changes (by dconnolly): * owner: huhickman => jhe -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/178#comment:

Re: [gpc-informatics] #155: Define Encounter type terms and Epic ETL

2014-11-12 Thread GPC Informatics
of Nov 6 ticket:64#comment:26) doesn't seem to include the results under "UNMC: Encounters". Do you plan to continue working in that direction? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/155#comment:7> gpc-informatics <http://informatics

Re: [gpc-informatics] #178: determine whether last.visit is the last fulfilled visit or the last scheduled visit

2014-11-12 Thread GPC Informatics
sues > > Have I answered your question? > > Jim Campbell -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/178#comment:9> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics

Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2014-11-12 Thread GPC Informatics
: Keywords:| Blocked By: Blocking: 70, 91, 120 | --+ Changes (by dconnolly): * cc: gpc-dev@… (removed) * cc: gpc-dev@… (added) -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/90#comment:9> gpc-infor

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-13 Thread GPC Informatics
oduction workflow at KUMC. George has the ball to provide whatever revisions to BuilderSaga seem worthwhile for documentation. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:66> gpc-informatics <http://informatics.gpcnetwork.org/>

Re: [gpc-informatics] #178: determine whether last.visit is the last fulfilled visit or the last scheduled visit

2014-11-13 Thread GPC Informatics
rk.org/trac/Project/ticket/178#comment:10> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-11-14 Thread GPC Informatics
roughly the same way the targets `i2b2_vm_deploy.mk` are, since those targets are known to result in a working system. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:67> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network -

Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2014-11-14 Thread GPC Informatics
if you would like additional clarification. Thanks, Laurel From: Phillip Reeder [phillip.ree...@utsouthwestern.edu] Sent: Wednesday, November 12, 2014 2:13 PM To: gpc-dev@listserv.kumc.edu; campb...@unmc.edu; Dan Connolly Cc: gpc-...@listserv.kuc.edu S

Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2014-11-14 Thread GPC Informatics
ng from GPC terms to CDM terms (#145), so the choice between Unknown and Final will go there. I suppose it would map GPC's "Billing Diagnosis" top level modifier to "Final". That's what I can think of for requirements. More on the other topics separately... -- Tic

Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2014-11-14 Thread GPC Informatics
p.s. Thanks for the thorough review. Clearly my 10 sided die knew what it was doing when it picked you! more on other issues separately... -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/90#comment:12> gpc-informatics <http://informatics.gpcnetwork.org/> Greater P

Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2014-11-14 Thread GPC Informatics
ling diagnosis data to HERON. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/90#comment:13> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2014-11-14 Thread GPC Informatics
ke it would match Encounter Diagnoses. Could be good to define now, if the goal is to incorporate health plans in the future. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/90#comment:14> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Networ

Re: [gpc-informatics] #71: portable HERON ETL for Epic

2014-11-14 Thread GPC Informatics
d on your main branch soon? -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/71#comment:11> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@lists

Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2014-11-17 Thread GPC Informatics
-- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/90#comment:15> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc

Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2014-11-17 Thread GPC Informatics
in Babel yet because we haven't finished the deployment but I'll have an updated diagnosis ontology in December. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/90#comment:16> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network -

Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2014-11-17 Thread GPC Informatics
fusion on this topic. >>> I'll add other comments to separate topics as well. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/90#comment:17> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2014-11-17 Thread GPC Informatics
ke a significant amount of effort on the Cerner/CMH side to implement this proposed structure of modifiers. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/90#comment:18> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #71: portable HERON ETL for Epic

2014-11-18 Thread GPC Informatics
: 127 Blocking: | -+--- Comment (by bos): Yes, there is no reason not to merge them, but I've got to resolve my "merge with ancestor" issue. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/

Re: [gpc-informatics] #186: Querying age by numerical constraints

2014-11-18 Thread GPC Informatics
ale * status: reopened => assigned Comment: Justin volunteered 11 Nov (notes: #12) to try to reproduce Hubert's work. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/186#comment:6> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plain

Re: [gpc-informatics] #31: data elements for ALS cohort characterization

2014-11-24 Thread GPC Informatics
ket/31#comment:26> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #31: data elements for ALS cohort characterization

2014-11-24 Thread GPC Informatics
the problem list is a collection of modifiers in the Diagnosis Hierarchy: > - Problem status >- Active >- Deleted >- Resolved > > p.s. thanks for the notes; more on meds separately -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/t

Re: [gpc-informatics] #31: data elements for ALS cohort characterization

2014-11-24 Thread GPC Informatics
esn’t drive workflow or billing it’s often unused. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/31#comment:28> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-d

[gpc-informatics] #198: Epic spring Research Advisory Council Presentation

2014-11-28 Thread GPC Informatics
URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/198> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #198: Epic spring Research Advisory Council Presentation

2014-11-28 Thread GPC Informatics
: | Blocked By: Blocking: | ---+--- Changes (by campbell): * owner: dconnolly => campbell * status: new => assigned -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/198#comment:1> gpc-infor

[gpc-informatics] Batch modify: #38, #53, #65, #71, #121, #129, #130

2014-12-01 Thread GPC Informatics
query?id=38%2C53%2C65%2C71%2C121%2C129%2C130> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-12-01 Thread GPC Informatics
vey (KeyGoalTracking#bc-survey) are in flux, and in some versions, deploying the data builder at each site is critical path. So conservatively, I'm moving this to that milestone. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:68> gpc-informatics <http://informati

Re: [gpc-informatics] #56: shareable synthetic test data sets: Epic clarity, i2b2, NAACCR, ...

2014-12-01 Thread GPC Informatics
cnetwork.org/trac/Project/ticket/56#comment:21> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #158: usable view of LOINC lab terms

2014-12-02 Thread GPC Informatics
Campbell is reviewing my categories to ensure that they are in-line with a clinician’s perspective. Based on Jim’s feedback, I will refine and issue a testable code set to Hubert. -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:13> gpc-informatics

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-12-02 Thread GPC Informatics
t URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:69> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mai

Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2014-12-02 Thread GPC Informatics
r within the spreadsheet and give some feedback. DC: Hubert, Nathan flip coins to load into Babel -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/90#comment:19> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains N

Re: [gpc-informatics] #119: federated breast cancer query with manual term alignment

2014-12-02 Thread GPC Informatics
-- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/119#comment:13> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev

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