Timothy Driscoll wrote:
hi,
I am using an external data file to apply a roygb color scheme to a
set of atoms. a snippet from an example data file looks like this:
1 -2.0 -1.0 -1.0 -0.0
2 7.0 9.0 6.0 8.0
3 8.0 18.0 4.0 15.0
4 7.0 12.0 12.0 17.0
5 0.0 0.0 0.0 0.0
6 4.0 5.0 4.0 5.0
7 5.0 6.0
Test of the resize script:
Most models there automatically resize fine.
BUT: watermo, bdno, and t2 seem to crash (black screen, mouse still
works) when I increase the size above a certain point (or too fast).
Memory usage at the point of crash is still under 64 MB. Reloading the
page doesn't
Well, this will only interest Spanish-speaking users rigth now, but
I'm already working on the English translation, and hopefully it will
be ready for Christmas presents :-)
I've written a 144-page book on how to use Jmol to study and display
molecular structures, including a guide to start
Fabuloso!!!
Angel Herraez wrote:
Well, this will only interest Spanish-speaking users rigth now, but
I'm already working on the English translation, and hopefully it will
be ready for Christmas presents :-)
I've written a 144-page book on how to use Jmol to study and display
molecular
It's possible that I messed up the multithread aspect of rendering. Be
sure to test this with antialiasDisplay off. If it happens then, we need
to call in Nico to do some syncronization consultation with me. ;)
Bob
pim schravendijk wrote:
Test of the resize script:
Most models there
Pim, I can't reproduce this problem with Windows/Mozilla/Jmol 11.9.39_dev
What do you see in the Java console?
Bob
pim schravendijk wrote:
Test of the resize script:
Most models there automatically resize fine.
BUT: watermo, bdno, and t2 seem to crash (black screen, mouse still
works) when I
On Oct 31, 2007, at 4:09 AM, Bob Hanson wrote:
Timothy Driscoll wrote:
hi,
I am using an external data file to apply a roygb color scheme to a
set of atoms. a snippet from an example data file looks like this:
snip
my Jmol script loads this file and colors atoms (column 1) by the
El 31 Oct 2007 a las 12:06, Egon Willighagen escribió:
I like the cover... it's a lipid, rigth?
Right! Dilauryl phosphatidyl ethanolamine
-
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Still grepping through log files
El 31 Oct 2007 a las 10:37, Timothy Driscoll escribió:
Bob, can you explain how Jmol assigns colors in the case of an
external data set? for example, the roygb scheme. I assume Jmol
breaks up the entire data range into 5 equal sections, and applies
one color to each section. (for the
Strangely enough I didn't manage to start the Java console.
I followed the instructions here:
http://www.java.com/en/download/help/521200.xml
but no console started. Has anyone experience with this? Maybe I need
to make sure java quits and then restarts.
At my second try watermo didn't crash
On Oct 30, 2007, at 5:06 PM, Timothy Driscoll wrote:
hi,
I am using an external data file to apply a roygb color scheme to a
set of atoms. a snippet from an example data file looks like this:
apologies; please ignore. this is a duplicate message.
tim
--
Timothy Driscoll
Hi, i want to report a possible bug:
When I load e.g. a benzene molecule (like attached benzene.xyz) and then
submit the following command on the Jmol-Console:
connect (_carbon and within(1.6, {0 0 0})) aromatic modify;
or even only:
select carbon and within(1.6, {0 0 0});
Jmol hangs
Oliver, it's a bug I need to fix, but use this:
connect (_c and within(1.6, coord, {0 0 0})) aromatic modify;
for good results (_c for carbon; add the word coord explicitly)
Bob Hanson
Oliver Stueker wrote:
Hi, i want to report a possible bug:
When I load e.g. a benzene molecule (like
Thanks Bob for the fast answer!
Now Jmol doesn't hang anymore, but complains about the Syntax:
$ connect (_c and within(1.6, coord, {0 0 0})) aromatic modify;
script ERROR: unexpected end of script command
line 1 command 1 of file null:
connect ( ( _c and within ( 1.6 , coords , {
Thanks Angel.
Well, this will only interest Spanish-speaking users rigth now, but
I'm already working on the English translation, and hopefully it will
be ready for Christmas presents :-)
I'd like to translate the book into Japanese.
I can't read Spanish, but I can read English without
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