Eric, this may be caused for a failure by Jmol to recognise the file
as a pdb format (I know it reads several lines is search of some
tokens)
Apart from other corrective actions in the file parser, you can try
to force it with
load pdb::yourfile.pdb
and see if that's the issue
--
sorry... fixed in January? but broken in February!
On 10 Feb 2015 at 17:14, Robert Hanson wrote:
> That's fixed.
> JmolVersion="14.3.12_2015.01.27"
>
> bug fix: configuration 1 broken
> bug fix: display configuration=1 broken (in Jmol 12.0, 2011)
>
> On
Jmol 14.3.12_2015.02.24
load =3o8m
has 3 configurations: A, B, C as displayed in the pop-up menu
However, selecting any of them in the menu locks Jmol (unresponsive to
mouse action)
--
Dive into the World of Parallel Pro
Hi Jeff
That sounds like someone installed WinRAR in those computers, and the
program appropriated itself of association to the jar extension
(which I find rather silly; jar files are indeed zipped files, but
not intended to be unzipped)
I've seen this occasionally.
I think the solution is to
Sorry, Rolf
> >
> >> If I 'right-click' near the bottom of JSmol most of the popup menu is
> >> clipped of.
> >
> > I see.
> > But what would you expect? If when you click, the right panel gets a
> > scrollbar, the Jmol panel would go up, off-screen when you scroll
> > down
> >
> I don't understan
Rolf,
> If I 'right-click' near the bottom of JSmol most of the popup menu is
> clipped of.
I see.
But what would you expect? If when you click, the right panel gets a
scrollbar, the Jmol panel would go up, off-screen when you scroll
down
> Only after reducing the size of the JSmol window to
Rolf, you may be right, but
1. the css solution is much cleaner in code and smooth in behaviour;
apart from window resize it responds perfectly to font size change or
browser zoom setting
2. based on my past experience, the js code for resizing is rather
browser-dependent and so tricky to achi
I have also seen this problem in some pages, not in others. I haven't
been able to track it down (lack of time).
Although the correct HTML5 header is what Bob showed, I doubt the
html doctype line will have an effect on this problem; the browsers
are very forgiving with that. I rather suspect
Hi Rolf
> And there might also be problems displaying all at once. (I havn't
> worked with 'altloc' yet so I am not sure about this.)
I'm quite sure that may be easily controlled, but you are right on
the other points.
> > As far as I know 'altloc' is only suitable for different positions of
Rolf, wouldn't the idea of "alternate (PDB format's "altLoc") be
better suited to this mutations than adding them in a new model?
> Q: Would it be possible to add an option to the new command to add the
> mutated residues as spearate models instead of changing the original model?
>
> We use thi
At least in Google Drive, your (personal) URL link will not work, you
need to first "share" the file to "anyone that has the link" and then
copy the link for downloading as Bob pointed out, rather than the
link to view the file.
Otherwise, maybe other services are easier for direct links. I use
Brenton, both of these work:
http://chemapps.stolaf.edu/jmol/jmol.php?source=http://biomodel.uah.es/model5/geom/stack.
pdb
http://chemapps.stolaf.edu/jmol/jmol.php?source=http://dl.dropboxusercontent.com/u/711971
05/eg3122.cif
but note that for the Dropbox url I am using http and not https (whi
On 28 Jan 2015 at 14:28, Robert Hanson wrote:
> http://chemapps.stolaf.edu/jmol/jsmol/simple.htm?load%20=1d66;cartoons%20only;color%20stru
> cture
>
> Best is to just install that on your own, though. It is in JSmol.zip within
> the distribution Jmol zip file.
Also, Brenton, with a custom file:
Brenton,
If you are coding the page, you can insert the url in the source, in the text
input box...
anywhere.
Or maybe you are looking for a page that is out there already and will load
your file using the
url parameters?
I think that jmol.php may do that
See
http://wiki.jmol.org/index.php/
Bob, that sounds terrific! Many people were expecting this tool.
If the results prove realistic enough, it will make for a great
teaching resource.
I probably do not have the time now, but will put this for testing in
my to-do list
Thanks for those 9 hours! ;-) buying you a handful of beers i
> Interesting idea, Angel, but typing all those parentheses and quotes?
well, that's what you can have. But read more below
> I had an alias capability in Protein Explorer and I loved it! Used it
> constantly. I had about 100 standard aliases defined.
I know
I just tested, and it's a little si
Eric,
not sure, but you might be able to implement this using JmolScript functions.
Something like
function q(x) { set antialiasdisplay @x; }
function s(x) { script @x+ '.spt' }
function s(x) { script @{x+ '.spt'} }
then
s('hiq') would expand to 'script hiq.spt'
q('off')would expand to '
Hi Margaret
Your syntax is not right
See
http://chemapps.stolaf.edu/jmol/docs/#atomexpressionsrasmolbiomolecularresiduespecificati
ons
If you want to select chain A, you need
select *:A
the colon there is essential to identify chain; this may also work but it's
less clear:
select :A
or, if y
Anthony,
> while the student fleet seems to be IE8.0 something!
Right! IE8 = no proper HTML5 = no JSnol at all
>From the icon, I'd say that's Windows 7 in those machines -- so they
should be able to update IE -- many many modern pages will partially
break in IE8. On WinXP, you are stuck wit
jsmol/j2s
Anyway, I believe that's not Anthony's cuase of problem
·
Dr. Angel Herráez
Biochemistry and Molecular Biology,
Dept. of Systems Biology, University of Alcalá
E-28871 Alcalá de Henares (Madrid), Spain
---
computers do have
Java configured, you could be better letting Jmol-Java step in. The
Java files take less space than the j2s ones and the page code is
mostly the same
·
Dr. Angel Herráez
Biochemistry and Molecular Biology,
Dept. of Systems Biology, University of Alcalá
E-28871 Alcalá d
Otis,
I don't think that "jsmol/j2s" is the same as "./j2s" and Anthony's
source suggests that JSmol files are in the same folder as the page,
given
: false,
as you will be able to see more info while loading
·
Dr. Angel Herráez
Biochemistry and Molecular Biology,
Dept. of Systems Biology, University of Alcalá
E-28871 Alcalá de Henares (Madrid), Spain
--
New Yea
> jmolEvaluate is available via this route (Bob???), hence my use of callbacks.
I understand that Jmol.evaluateVar() is the way to go; please see:
http://wiki.jmol.org/index.php/Jmol_JavaScript_Object/Functions#evaluateVar
So, rewriting Eric's code, it could be (Javascript):
var theSeq = Jmol.e
Rolf,
When I open the file you attached in Jmol 14.2.9 (Win7), I only see the line
but it is orange.
That's because P-only or CA-only files are rendered specially, i.e..
"backbone off" removes the line
"spacefill only" or "spacefill -0.8" also do it
---
El software de antivirus Avast ha an
Thanks for the feedback, Otis, I will investigate
1. The file is not large, 15 kB gzipped
2. I have no control on the server's settings and I know nothing about Ajax
3. The jsmol.php is there, and indeed it works part of the time. Additionally,
the pdb file
should be cached in the browser, as
Dear Jmolers,
We are detecting an error when using JSmol mode in Chrome (tested in several
computers)
in a set of pages of mine.
There are 4 pages, all load the same pdb-format file which is gzipped.
The issue is that, randomly, one or another of the pages throw this error in an
alert box:
Err
Hi Franck
> I have a problem with the mo command in Jsmol : when I want to show
> translucent isosurface (with *mo translucent *command) the molecular
> orbital is still in opaque.
Not sure of your precise problem, but applying tranlucency is some times tricky.
Some possible solutions you may try
Hi Darren
There is some limitation in the length and complexity of the script in the url,
I caanot give you
details,
But there are other choices you might use:
1. you can embed the script in the CML file (there are details about this in
the Jmol Wiki)
2. you can maybe invoke in the url a scr
Jing,
It may depend on the file format. My experience with crystal formats is null.
This is what I
know from other formats:
If the file provides atom numbers (like PDB), Jmol will obey them. The
atomIndex starts at
zero, so it is usually atomNo minus one.
Otherwise, i guess that atoms are nu
Chris,
This is an example of the code generated by JSmol for the menu:
spacefill
ball & stick
So it bot using the value of the options to store the scripts, that's why you
approach is not
working
Maybe it will be easier if you create the menu yourself and attach a function
that will run
João Palhoto Matos wrote:
> I added jquery-ui 1.10.2.
> jmol includes jquery and jquery-ui.
Thanks, João
That's an important information.
However, i do not think that is so by design. I understood that the
part of jQuery-UI that is used by JSmol pop-up menu is isolated and
embedded into JSmol
Doug Lundberg wrote:
> I want to have it made into a 'glass block.
Yes, I've seen that made from a Jmol model, I think it was by
exporting to VRML format, but I am not sure what other intermediate
steps were involved.
Maybe you don't even need to go through AutoCAD.
Jmol can export to VRML,
Doug,
I guess what you need is to find a file format that Jmol can export
and AutoCAD can import. Is that the case?
VRML comes to mind
In Jmol, please explore the "write" command, that's the way. Some of
its options are available in a more friendly way from Jmol's pop-up
menu, File > Export >
João, can you comment on what has been the solution?
> Everything works now. Thanks!
--
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Eric, I agree with you but --as I understand it-- Darren does not want to edit
pages (one per model).
There is also a concern regarding uploading his files to Proteopedia -- they
have nothing to do with biomolecules, and he is not interested in writing
descriptions about them, I think. He just
Darren, I've done a test locally, and it is indeed possible to display the
model
loaded from figshare (using the download URL, not the page URL) in a
JSmol page.
i.e. http://files.figshare.com/1825432/MeOH_NMR01b.log
The link you could share with collaborators is of the form
http://some.server
darren.rhodes wrote:
> Hi Angel
>
> Thanks for your note but I was hoping to be able to exhibit the full
> flavour of a GAMESS (US) log file
Yes, that was clear. I mentioned SMILES just because it works but I was
anticipating it was not your case.
-
darren.rhodes wrote:
> When I type the following on my command line,
>
> jmol MeOH_NMR01b.log &
>
> As is common to our shared experience, jmol starts up, the structure
> found within the file MeOH_NMR.log is appears and it can be
> interrogated using the tools that ship with jmol.
Yes, but tha
Hi Darren
There are two issues in your question
1. where to locate the page that holds Jmol (I have understood you do not
want to create it)
2. where to locate the data file
There is something similar implemented, e.g. in Wikipedia. Many molecules,
like https://en.wikipedia.org/wiki/Citrate
ha
"set dynamicMeasurements" is not recognized by Jmol
14.3.10_2014.11.27
set dynamicMeasurements on;
ERROR en guión: no se reconoce el parámetro SET: dynamicMeasurements
set >> dynamicMeasurements << true
Thanks, Otis and Bob
Now I have several ways to choose from.
Otis, that's really impressive. I have never used "loop" in that way.
I was thinking of a "for" loop.
My only concern is that leaves a running script active. I guess
"!quit" is the only way out of it -- I will try
Thanks, Bob, for the
Thanks, Otis
I would not want jumps, but smooth rotation and without an end. I think that
your suggestion of a loop will always have to end after a certain total angle.
I agree that it seems there is not a spinSelected solution. However, the doc
says rotateSelected takes all the same arguments
Dear all,
I am trying to achieve constant spinning earound a bond, using either
"rotateSelected" or "rotate branch"
I can get instant rotattion or gradual rotation, but it is not indefinite, i.e.
it
stops after a certain angle.
>From the doc, I am expecting that the keyword SPIN can be used fo
Rolf, I haven't done this, but... have you tried these?
function hoverAction(p1, p2, p3) {
show p1;
show p2;
show p3;
}
set hoverCallback "jmolscript: hoverAction('something1', 'something2',
'something3');";
or
function hoverAction() {
show p1;
show p2;
show p3;
}
set
> The JSmol popup menu is isolated "scoped" css. What is a problem is
> when a page also uses jQuery UI elements and the developers have not
> also scoped that UI. See http://jqueryui.com/download/
That's correct. It is due to some css rules in popup being applied to
standard jQuery UI tags or
That's updated in Jmol Wiki.
Thans, Geoff
On 11 Nov 2014 at 21:09, Geoffrey Rowland wrote:
> To simply restore the default About... menu item, the exemplars in the Wiki
> just need the to be
> edited so that in the line popupMenu = ...
> aboutComputedMenu
> is changed to:
> aboutMenu
I also ha
Reading Otis' latest post, it occurs to me that a solutio may be to
leave the default position as it is and force --if needed-- to open
at 0,0 using CSS, rather than chaginf internal JSmol code for the
opening of the pop-up menu.
I keep thinking that we need a better CSS specification of the po
Geoff, it is indeed complex and I am not sure I can help you with that
problem.
Please make sure about one possible cause: the examples in the wiki (which
I wrote) are based on a certain version of Jmol.
You need to check what the (your) current version menu looks like (by using
"write menu" co
, font size etc. of the popup menu by
imposing CSS rules (a bit tricky, but can be done)
2. You can design a shorter custom popup menu and have JSmol load
that. There is info in the wiki for custom menus. Most users will not
need the complexity of the full menu.
·
Dr. Angel Herráez
Biochemistr
Hi Brenton
I don't think this is easy by default. There are considerations:
1. Most PDB files have no hydrogens. So, what to do?
2. When a PDB file has hydrogens, Jmol could calculate what you want, but I
d not think it is straightforward, You could write a script testing nr. of
bonds,
but t
Hi Rolf
I do not know if there is a limit either in Jmol itself or in the PDB
spec., but why don't you forget that and use the more reliable and
clean "connect" script? You can embed it in the pdb file if you want.
--
Jing, I cannot IMAGINE how a bond type of metallic, ionic, covalent
etc. can be inferred from crystallographic information, which is just
geometrical data.
It's chemistry you are talking about, or maybe quantum mechanics.
I do not think you can do that easily.
> Hi angel,
>
> We'd like extract bonds information and do some analysis for bonds.
Ok
My question is still there:
1. Does your input file have such information? Which is the file
format?
2. If not, how would you expect any software to evaluate what is a
metallic bond?
Jing, Jmol uses both distance between atoms (as Bob has explained)
for "single" bonds, and in addition bond types declared in the input
file (e.g. the MOL format decalres single, double, partial, aromatic
etc.)
Nothing about oxidation number.
You can aslo force bonds and types using the "connec
Hi Jing
What file format are you using? Does it include such information
about "bond type"
Jmol can offer what it reads from the original file, not much else.
How would you define a metal bond vs. a covalent bond, or any other?
What parameters?
> Ah, balls and sticks has always been the default
Sorry, I must be dense today...
Maybe it was cartoons for local files dragged onto Jmol. These different
defaults have always confused me.
Forget it. No need for explanations
--
Jmol 14.3.8 application, from 14 Oct, retrieves models from pdb
(using the load = method) but does not apply the usual cartoon
default, just loads ball and stick
Is this a change or a bug?
--
___
Both
label "\u2022"
and
label "\\u2022"
are working for me, inside the a or area tag
Another choice is to take the whole script into a js function, like
But I guess that's a page code design decision. Just extracting the label
script to a function looks tidy to me; the quot is also nice solu
Hi Bob
> Those codes are not reliable on pages. Use the UTF-8 codes.
Meaning which codes? The backslash ones or the keyboard ones?
\u is Unicode = UTF-8, as far as I know
--
__
Aha, so it's a challenge!
I can't resist those, let's see...
As I said, problems with quotes... take some code out to a js function.
Try this, it's working for me:
function labelDot() {
return 'label "\u2022\";';
}
-
for your case:
label "\u00B7" // mid-dot
// probably you can find a bigger dot,
label "\u2022" // bullet
label "\u2014"; // m-dash
label "\u2212"; /7 minus sign - syntactically more correct!
HTH, regards
·
Dr. Angel Herráez
Biochemistry and Molecular
Olá Manuel,
> b) Do you think I can use jmol to produce for publication quality, white
> background pictures, with bond distances? is yes, tips?
Also:
- generate the image from the console, using the "write" command,
specifying a large vaue for width and height (i.e, do not use the d
I thought it was "reset", but I see now it is the "rotate x 90" which is
cancelling the spin.
You should be ok using the conditional that I proposed, that checks spinning
state BEFORE doing anything and later restores it.
And being so, I think it can be shortened to this alternative:
Jmol.jmol
Hi David
> "hbonds calculate"
That change was introduced long time ago; it has nothing to do with the
switch to JSmol. You only need it once, before the first instance of hbonds
on. You are safe if you add it after load.
> Jmol.jmolCheckbox(myJmol, "spin off; spin on;", "spin on; spin off;",
>
Hello Gabor
I'm not a programmer, but I'd like to add some comments in this discussion.
Jmol has a lot of power, but it is not mainly a programming language. It is a
file reader, parser and viewer with many features.
> With a wealth of commands/command options, the user's previously
> typed com
Wow!
Amazing, Bob! Well done
I now have something to learn about
Thank you, Rolf. BTW, I'll add details about your function into the
Wiki -- now together with the simpler, new variant of capture
command.
I think we already have some page or section devoted to producing
animations/movies
---
Thomas, the key issue is what is the size of the model you are loading.
And maybe the rendering style or the initial script that you are running.
--
Comprehensive Server Monitoring with Site24x7.
Monitor 10 servers for $
Thanks, Bob
I'l see what I can do. I thought of sync, but this is a one-time action, so the
sync will need to be cancelled immediately.
Also, my experience with sync has been rather erratic, it is probably ok in
current version but it has failed in several occasions to perform as I was
expecti
Dear users,
In adapting old pages to JSmol, one of the rare issues is when they
were using
jmolSetTarget('all')
The adapter Jmol2.js library does not cater for this case.
I am looking for a conversion function, other than to hard-code the
calls in the pages. For example, I have a single chec
> Any ideas about the GIF-editing software because I've been using GIMP
> (the same software I use to animate the PNGs I get from Jmol) and I've
> tried to make the background transparent but it does not work. A free
> software would be ideal.
for example, online-image-editor DOT com
lets you u
> I want a transparent background as I am uploading 3D animated GIFs to my
> Wiki and a transparent background would be fantastic.
So you need a transparent bkg in the GIF file, not in Jmol. Ok,
then the recommendation is to set the background to a singular color that will
not be part of any sh
Hi Brenton
> > I generally like CPK colours but I would like to change the colour for
> > carbon to black.
color carbon black;
color _H [xE0];
color carbon none; //reset to default
http://chemapps.stolaf.edu/jmol/docs/#colorelement
> > I think I may have asked this before, so if so I
> >
Thomas,
> thank you for the help so far in the last questions.
> Everything solved! :)
It would be good for the list users that you mention what was the solution.
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Dear Jeff,
Congratulations! That sounds terrific.
Do you mind if we add that information in the Jmol Wiki? --or you could add it
yourself ;-)
Jmol users are in demand of manuals to get started (that's the reson why my
book, despite being 7 years old and somewhat obsolete for the new Jmol
ver
Hi Thomas
When you load several models, they are placed in different "frames". If you
want to display all at a time, use the command
frame all
otherise, move between models using the "frame" command.
Check the documentation
http://chemapps.stolaf.edu/jmol/docs/#frame
-
Hi Thomas
There may be no need for any changes in the other server; please try my
code at the bottom. You MUST define the location of jsmol.php
That cod works for me in localhost, but nt when I upload to my server. That
may be related to Bob's comments about AJAX calls, I don't know about that.
Hi Thomas
What that message says is that to load the 2nd file (probably because it
comes from a different server) the use of the jsmol.php component is
needed, and you have not properly configured the location of that file.
("your.server.here" is a placeholder for the actual location, that you m
Rick,
the error I see
Jmol.SetCheckboxGroup is not a function
suggests and upper/lowercase issue.
Function should be Jmol.setCheckboxGroup
http://wiki.jmol.org/index.php/Jmol_JavaScript_Object/Functions#setCheckbo
xGroup
Thanks, Bob, but that's not the case.
1. The ligands affected are similarly buried to the ones that work.
2. I had forgotten about "only", but I guess it does the same as using the
select & ignore pair, which also has the problem --although with different
ligands.
See the example PDB IDs that I
Question: What is the expected outcome of an isosurface command for
ligands in a model with several ligands?
I am doing this, Jmol app 14.2.3:
load =1hho;
cartoon only;
select ligand;
spacefill 50%; // there are 3 ligands
isosurface select(ligand) molecular;
/*
only 2 of the 3 ligands get a
wrote:
> On Sep 18, 2014, at 8:18 AM, Robert Hanson
> wrote:
>
> http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.7_2014.09.17.zip
>
> bug fix: spin broken in WebGL (Jaime)
>
> spin still broken on Mac, Safari, FFox and Chrome.
>
>
Hi Thomas
I haven't got the time now to see your code in detail, but you can
try this:
Jmol.getApplet() writes to the html page
You probably want to use Jmol.getAppletHtml() instead
See
http://wiki.jmol.org/index.php/Jmol_JavaScript_Object/Functions#getApp
letHtml
Christian, I believe that in VRML format everything is assumed to be in some
units (meters?) by the printing software. I'm not sure about X3D, but it's
probably the same. So I'd say yes, there will be a relation betwen angstroms
in the model and the printed size.
We discussed the problem time a
@Brenton,
> user guide and I don't know how [atom-expression] and [bond-type] is
> meant to look like for my example. My current example is metamizole and
> I'd like a double bond to go between C17 and C18, any idea what code I'd
> have to use?
That would be like
connect (C17) (C18) double
or
Hi Brenton
1. If you edit manually the pdb file, you can add CONECT records for the
double bonds. But it is better -and more flexible- to use Jmol scripts (which
may be embedded in the pdb file or applied from within the page) with the
"connect" command. This allows to set partial and aromatic
Hello again
> thanks for your reply. These pointers are indeed very useful. The
> Java version actually works,
That's a piece of information relevant towards diagnosing the
problem. The Jmol object (java or html5) is inserted using the
JSmol.min.js library, but in the case of JSmol/HTML5 addi
e may be a clue.
To do so, append "?_USE=JAVA" to the URL
http://wiki.jmol.org/index.php/Jmol_JavaScript_Object#Setting_paramete
rs_from_the_URL
2- The list of varibles that JSmol uses is at
http://wiki.jmol.org/index.php/Compatibility
Good luck!
·
Dr. Angel Herráez
Bioche
It seems to have been added in "13.3.4_dev_2013.08.21"
Jmol history of changes is documented in
http://sourceforge.net/p/jmol/code/HEAD/tree/trunk/Jmol/src/org/jmol/v
iewer/Jmol.properties
Upper/lowercase is never relevant in Jmol scripts
--
Hello Christian
I think that Jmol can export OBJ, but not read it
Oh, I see now it can read OBJ as surfaces, so you need to use the
"isosurface" command, not "load"
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Dave,
look for "rotate best"
It may or not be what you expect...
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Are you Audit-
lá de
Henares, in Madrid province)
The course will focus on Proteopedia and its uses to study, display
and teach macromolecules. It will be run in English and/or Spanish,
according to the audience.
All information is available at http://bit.ly/P14UAH
Hope to see some of you!
·
Dr. Angel He
Hi John
You probably should avoid echo and print; try using
getPropertyAsJSON()
http://wiki.jmol.org/index.php/Jmol_JavaScript_Object/Functions#getPro
pertyAsJSON
Something like
var bondInfoObj = Jmol.getPropertyAsJSON(jsmol_handle, "bondInfo")
-
eader should not simply be a
> number. Apparently Angel knew that the number should be dropped when
> using ATOM.
Because the single number is not valid PDB syntax. You could have
"REMARK 2 " or "REMARK 1734" without any problem.
·
Dr. Angel Herráez
Biochemistry an
Hi Michael
> The starting point was the following format found in the web
> documentation
> data "model example" |2| testing |C 1 1 1| O 2 2 2| end "model
> example";show data
>
> apparently "Load data" is the modern form, and "show data" is not
> needed for display.
"load data" is the mode
Pino, that URL loads without problem in my Firefox
Try clearing your cache
On 18 Sep 2014 at 20:14, pino.stricc...@libero.it wrote:
> i am aalways having a bloank page http://pinostriccoli.altervista.
> org/html5/jsmol.htm?_USE=HTML5
---
Happy you found your way
"Show data"
is good to CHECK that the data has indeed been read, but it will only
work if you have opened the console and are looking at it. Nothing to
do with the script action on the model.
I'm still surprised why you did not get the atoms and bonds displayed
from
Hello Gabriel
It's "antialiasDisplay"
http://chemapps.stolaf.edu/jmol/docs/#setantialiasing
--
Want excitement?
Manually upgrade your production database.
When you want reliability, choose Perforce.
Perforce version
Michael,
please check out this test page
http://biomodel.uah.es/Jmol/test-inline.htm
It may help you
--
Want excitement?
Manually upgrade your production database.
When you want reliability, choose Perforce.
Perforce ve
name at columns 13-16.
http://www.wwpdb.org/documentation/format32/sect9.html#ATOM
Otherwise, Jmol may be reading the data as XYZ format.
·
Dr. Angel Herráez
Biochemistry and Molecular Biology,
Dept. of Systems Biology, Univ
301 - 400 of 1901 matches
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