Messages by Date
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2019/05/02
[spctools-discuss] Re: Xtandem searches crash and unable to kill command
Valdemir Melechco Carvalho
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2019/05/02
[spctools-discuss] Xtandem searches crash and unable to kill command
Valdemir Melechco Carvalho
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2019/04/09
Re: [spctools-discuss] PTMProphet 5.2.0. error
Felipe da Veiga Leprevost
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2019/04/09
Re: [spctools-discuss] PTMProphet 5.2.0. error
David Shteynberg
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2019/04/09
Re: [spctools-discuss] PTMProphet 5.2.0. error
Felipe da Veiga Leprevost
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2019/04/09
Re: [spctools-discuss] TPP 5.2 Compile Error
Dean
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2019/04/09
Re: [spctools-discuss] TPP 5.2 Compile Error
David Shteynberg
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2019/04/09
[spctools-discuss] TPP 5.2 Compile Error
Dean
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2019/04/08
[spctools-discuss] Processing an Output from StPeter in MSstats
Dmytro Morderer
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2019/04/07
Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet
Alexey Nesvizhskii
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2019/04/06
RE: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet
Eric Deutsch
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2019/04/05
Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet
ilya gertsman
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2019/04/05
Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet
Ankit Balhara
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2019/04/05
RE: [EXT] Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet
Noel Carter
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2019/04/05
Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet
David Shteynberg
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2019/04/04
Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet
Ankit Balhara
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2019/04/04
[spctools-discuss] Re: Combining the DIA Umpire results by iProphet
Felipe da Veiga Leprevost
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2019/04/03
[spctools-discuss] Combining the DIA Umpire results by iProphet
Ankit Balhara
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2019/04/02
Re: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0)
Jason
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2019/04/02
Re: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0)
Luis Mendoza
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2019/03/30
Re: [spctools-discuss] PTMProphet 5.2.0. error
Felipe da Veiga Leprevost
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2019/03/29
Re: [spctools-discuss] PTMProphet 5.2.0. error
David Shteynberg
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2019/03/26
[spctools-discuss] xinteract TPP v5.2.0 - exited with non-zero exit code: 139
Elva Liu
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2019/03/25
Re: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0)
Luis Mendoza
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2019/03/25
Re: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0)
Jason
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2019/03/25
RE: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0)
Eric Deutsch
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2019/03/25
[spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0)
Jason Winget
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2019/03/25
[spctools-discuss] StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0)
Jason Winget
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2019/03/22
Re: [spctools-discuss] PeptideProphet scores
David Shteynberg
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2019/03/22
[spctools-discuss] PeptideProphet scores
Felipe da Veiga Leprevost
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2019/03/19
Re: [spctools-discuss] PTMProphet 5.2.0. error
Felipe da Veiga Leprevost
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2019/03/19
Re: [spctools-discuss] PTMProphet 5.2.0. error
David Shteynberg
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2019/03/19
[spctools-discuss] PTMProphet 5.2.0. error
Felipe da Veiga Leprevost
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2019/03/15
Re: [spctools-discuss] Combining the data on two tissues in one library
Ankit Balhara
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2019/03/15
RE: [spctools-discuss] Combining the data on two tissues in one library
Eric Deutsch
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2019/03/14
[spctools-discuss] Combining the data on two tissues in one library
Ankit Balhara
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2019/03/13
Re: [spctools-discuss] StPeter ERROR: Unknown modification: C[158]
Luis Mendoza
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2019/03/13
[spctools-discuss] TPP 5.2.0 Release is now available
Luis Mendoza
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2019/03/12
[spctools-discuss] Re: TPP Comet Peptide Prophet Error
magnus.palmb...@gmail.com
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2019/03/08
[spctools-discuss] TPP 5.1.0 installation and Perl
Amit Yadav
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2019/02/28
Re: [spctools-discuss] Warning message during the peptideprophet analysis
Ankit Balhara
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2019/02/21
Re: [spctools-discuss] peptideprophet does not produce valid pepXML, but iprophet does
David Shteynberg
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2019/02/21
Re: [spctools-discuss] peptideprophet does not produce valid pepXML, but iprophet does
Michael Riffle
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2019/02/21
Re: [spctools-discuss] peptideprophet does not produce valid pepXML, but iprophet does
David Shteynberg
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2019/02/21
[spctools-discuss] peptideprophet does not produce valid pepXML, but iprophet does
Michael Riffle
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2019/02/21
Re: [spctools-discuss] StPeter ERROR: Unknown modification: C[158]
Goutham Vasam
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2019/02/21
RE: [spctools-discuss] StPeter ERROR: Unknown modification: C[158]
Michael Hoopmann
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2019/02/15
Re: [spctools-discuss] Warning message during the peptideprophet analysis
Jesse Meyer
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2019/02/14
Re: [spctools-discuss] Warning message during the peptideprophet analysis
Ankit Balhara
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2019/02/14
Re: [spctools-discuss] Warning message during the peptideprophet analysis
Jesse Meyer
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2019/02/14
[spctools-discuss] Warning message during the peptideprophet analysis
Ankit Balhara
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2019/02/05
RE: [spctools-discuss] mzXML - peak encoding/decoding
Eric Deutsch
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2019/02/04
[spctools-discuss] mzXML - peak encoding/decoding
jeffreyavansanten
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2019/01/30
Re: [spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries?
Hampton, Brian
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2019/01/29
[spctools-discuss] Re: Problem during spectrast library generation
Ankit Balhara
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2019/01/29
Re: [spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries?
David Shteynberg
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2019/01/29
Re: [spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries?
Hampton, Brian
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2019/01/29
Re: [spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries?
David Shteynberg
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2019/01/29
RE: [spctools-discuss] Problem during spectrast library generation
Eric Deutsch
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2019/01/29
Re: [spctools-discuss] Problem during spectrast library generation
Ankit Balhara
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2019/01/29
RE: [spctools-discuss] Problem during spectrast library generation
Eric Deutsch
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2019/01/29
[spctools-discuss] Quantic vs St. Peter
Hampton, Brian
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2019/01/29
[spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries?
Hampton, Brian
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2019/01/29
[spctools-discuss] Problem during spectrast library generation
Ankit Balhara
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2019/01/28
[spctools-discuss] A question about the Mayu
Ankit Balhara
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2019/01/15
[spctools-discuss] Problem analyzing MS-GF+ data using peptideprophet tool of TPP GUI- Petunia
Ankit Balhara
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2019/01/15
[spctools-discuss] Anlaysis of MS-GF+ data using Peptideprophet tool of TPP GUI "Petunia"
Ankit Balhara
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2019/01/10
[spctools-discuss] Re: xsl file not being created
Jimmy Eng
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2019/01/07
[spctools-discuss] xsl file not being created
Bronson Petterson
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2019/01/02
[spctools-discuss] Re: A question about ProteinProphet
Le ZHENG
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2019/01/02
Re: [spctools-discuss] some questions: model failure, parametric vs semi-parametric, same search engine but different parameters, function of scripts
David Shteynberg
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2018/12/28
Re: [spctools-discuss] Libra quantification for TMT 11-plex
Luis Mendoza
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2018/12/20
[spctools-discuss] Libra quantification for TMT 11-plex
Rachel Nadeau
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2018/12/11
[spctools-discuss] some questions: model failure, parametric vs semi-parametric, same search engine but different parameters, function of scripts
alastair.skeffington via spctools-discuss
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2018/12/10
Re: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Robert
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2018/12/09
RE: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Eric Deutsch
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2018/12/06
Re: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Robert Winkler
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2018/12/03
RE: [spctools-discuss] Re: External Tools Export mzIdentML
Eric Deutsch
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2018/12/03
[spctools-discuss] Re: External Tools Export mzIdentML
guoguodigi...@msn.com
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2018/12/03
RE: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Eric Deutsch
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2018/12/03
Re: [spctools-discuss] Mascot2XML: decoys
alastair.skeffington via spctools-discuss
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2018/12/01
Re: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Robert
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2018/11/29
Re: [spctools-discuss] Failed in running ASAPRatio
David Shteynberg
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2018/11/29
Re: [spctools-discuss] Failed in running ASAPRatio
David Shteynberg
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2018/11/29
Re: [spctools-discuss] Failed in running ASAPRatio
Ruifeng Hu
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2018/11/29
[spctools-discuss] Failed in running ASAPRatio
Ruifeng Hu
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2018/11/28
RE: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Eric Deutsch
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2018/11/28
RE: [spctools-discuss] root in TPP docker image 16899d782bad on Win 10?
Eric Deutsch
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2018/11/27
[spctools-discuss] root in TPP docker image 16899d782bad on Win 10?
Robert
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2018/11/27
Re: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Robert
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2018/11/26
RE: [spctools-discuss] simple text editor for TPP 5.2 docker?
Eric Deutsch
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2018/11/23
Re: [spctools-discuss] Mascot2XML: decoys
David Shteynberg
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2018/11/23
[spctools-discuss] simple text editor for TPP 5.2 docker?
Robert
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2018/11/23
Re: [spctools-discuss] Mascot2XML: decoys
alastair.skeffington via spctools-discuss
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2018/11/22
RE: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Eric Deutsch
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2018/11/22
[spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Robert
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2018/11/22
Re: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue:
Robert
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2018/11/21
[spctools-discuss] working with replicate data and 15N labelled proteins
Gunjan Pandey
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2018/11/21
Re: [spctools-discuss] How to set number of cores/threads/RAM in TPP
Gunjan Pandey
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2018/11/21
RE: [spctools-discuss] How to set number of cores/threads/RAM in TPP
Eric Deutsch
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2018/11/21
Re: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue:
Robert
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2018/11/20
[spctools-discuss] How to set number of cores/threads/RAM in TPP
Gunjan Pandey
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2018/11/20
Re: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue:
David Shteynberg
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2018/11/20
Re: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue:
Robert Winkler
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2018/11/20
RE: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue:
Eric Deutsch
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2018/11/20
[spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue:
Robert
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2018/11/19
Re: [spctools-discuss] Linux version of TPP
Kamal Mandal
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2018/11/19
RE: [spctools-discuss] Linux version of TPP
Eric Deutsch
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2018/11/19
Re: [spctools-discuss] Linux version of TPP
Kamal Mandal
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2018/11/19
RE: [spctools-discuss] Linux version of TPP
Eric Deutsch
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2018/11/19
Re: [spctools-discuss] Linux version of TPP
Kamal Mandal
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2018/11/18
RE: [spctools-discuss] Linux version of TPP
Eric Deutsch
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2018/11/17
Re: [spctools-discuss] Linux version of TPP
Kamal Mandal
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2018/11/16
Re: [spctools-discuss] convert prot.xml to EXCEL with biocontainers/tpp
Luis Mendoza
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2018/11/16
[spctools-discuss] Re: Running TPP/Petunia GUI with Docker
Robert
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2018/11/15
Re: [spctools-discuss] Linux version of TPP
Kamal Mandal
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2018/11/15
RE: [spctools-discuss] Linux version of TPP
Eric Deutsch
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2018/11/15
Re: [spctools-discuss] Linux version of TPP
Kamal Mandal
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2018/11/15
RE: [spctools-discuss] Linux version of TPP
Eric Deutsch
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2018/11/15
[spctools-discuss] Linux version of TPP
Kamal Mandal
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2018/11/14
[spctools-discuss] Simple protXML to tsv converter (Python3)
Robert
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2018/11/14
RE: [spctools-discuss] Percolator stopped working using Kojak result files
Michael Hoopmann
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2018/11/14
RE: [spctools-discuss] Running TPP/Petunia GUI with Docker
Eric Deutsch
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2018/11/14
RE: [spctools-discuss] convert prot.xml to EXCEL with biocontainers/tpp
Eric Deutsch
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2018/11/14
Re: [spctools-discuss] MSFragger: peptide prophet extended mass model
alastair.skeffington via spctools-discuss
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2018/11/13
Re: [spctools-discuss] Percolator stopped working using Kojak result files
Gabriella Gellen
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2018/11/13
Re: [spctools-discuss] MSFragger: peptide prophet extended mass model
David Shteynberg
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2018/11/13
[spctools-discuss] MSFragger: peptide prophet extended mass model
alastair.skeffington via spctools-discuss
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2018/11/12
RE: [spctools-discuss] Percolator stopped working using Kojak result files
Michael Hoopmann
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2018/11/10
Re: [spctools-discuss] Mascot2XML: decoys
alastair.skeffington via spctools-discuss
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2018/11/08
[spctools-discuss] Percolator stopped working using Kojak result files
Gabriella Gellen
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2018/11/08
Re: [spctools-discuss] Mascot2XML: decoys
David Shteynberg
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2018/11/08
[spctools-discuss] Mascot2XML: decoys
alastair.skeffington via spctools-discuss
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2018/11/05
[spctools-discuss] convert prot.xml to EXCEL with biocontainers/tpp
Robert
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2018/11/05
[spctools-discuss] Problems running xinteract in TPP5.1.0
JeBu42
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2018/10/30
Re: [spctools-discuss] Re: Mascot2XML issues
alastair.skeffington via spctools-discuss
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2018/10/23
Re: [spctools-discuss] Running TPP/Petunia GUI with Docker
Darryl Davis
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2018/10/22
Re: [spctools-discuss] Running TPP/Petunia GUI with Docker
Robert Winkler
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2018/10/22
RE: [spctools-discuss] Running TPP/Petunia GUI with Docker
Eric Deutsch
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2018/10/22
[spctools-discuss] Running TPP/Petunia GUI with Docker
Robert
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2018/10/13
[spctools-discuss] How to persive the multiple identified phospho peptide on the protein information
Syed Azmal Ali
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2018/10/12
Re: [spctools-discuss] Re: Mascot2XML issues
David Shteynberg
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2018/10/09
[spctools-discuss] PeptideProphet Using Decoy Peptides to build the machine learning model but reject for selection
davisharif
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2018/10/04
[spctools-discuss] novor2xml questions
Emma Whittington
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2018/10/02
Re: [spctools-discuss] Can't exec "tpp_models.pl" TPP/kojak
Alex Zelter
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2018/10/02
Re: [spctools-discuss] Can't exec "tpp_models.pl" TPP/kojak
David Shteynberg
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2018/10/02
[spctools-discuss] Can't exec "tpp_models.pl" TPP/kojak
Alex Zelter
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2018/10/02
Re: [spctools-discuss] Re: Mascot2XML issues
alastair.skeffington via spctools-discuss
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2018/10/02
Re: [spctools-discuss] Re: Mascot2XML issues
alastair.skeffington via spctools-discuss
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2018/09/27
Re: [spctools-discuss] Kojak
Kamal Mandal
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2018/09/27
RE: [spctools-discuss] Kojak
Michael Hoopmann
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2018/09/27
[spctools-discuss] Kojak
Kamal Mandal
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2018/09/27
[spctools-discuss] Kojak FDR analysis
Kamal Mandal
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2018/09/27
Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:....
Felipe da Veiga Leprevost
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2018/09/27
Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:....
David Shteynberg
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2018/09/27
Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:....
Felipe da Veiga Leprevost
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2018/09/27
Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:....
David Shteynberg
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2018/09/27
Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:....
Felipe da Veiga Leprevost
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2018/09/14
Re: [spctools-discuss] Re: Convert mgf to mzML/mzXML
Chambers, Matthew
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2018/09/14
Re: [spctools-discuss] Re: Mascot2XML issues
David Shteynberg
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2018/09/14
Re: [spctools-discuss] Re: Mascot2XML issues
alastair.skeffington via spctools-discuss
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2018/09/13
Re: [spctools-discuss] Re: Mascot2XML issues
David Shteynberg
-
2018/09/13
Re: [spctools-discuss] Re: Mascot2XML issues
David Shteynberg
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2018/09/13
[spctools-discuss] Re: HELP PLEASE: InterPro .xml results importing into TPP pipeline?
alastair.skeffington via spctools-discuss
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2018/09/13
Re: [spctools-discuss] Re: Mascot2XML issues
alastair.skeffington via spctools-discuss
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2018/09/09
[spctools-discuss] Re: Convert mgf to mzML/mzXML
Adam Rabalski
-
2018/09/07
Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides)
Adam Rabalski
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2018/09/07
Re: [spctools-discuss] Re: Mascot2XML issues
David Shteynberg
-
2018/09/05
[spctools-discuss] HELP PLEASE: InterPro .xml results importing into TPP pipeline?
Robyn Leigh Smith
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2018/09/05
[spctools-discuss] InterPro protein.xml file to TPP or ProteomeDiscoverer prot.xml file
Robyn Leigh Smith
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2018/09/05
Re: [spctools-discuss] Re: Mascot2XML issues
alastair.skeffington via spctools-discuss
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2018/09/04
Re: [spctools-discuss] Re: Mascot2XML issues
David Shteynberg
-
2018/09/04
[spctools-discuss] Re: analysing PTMprophet output
Adam Rabalski
-
2018/09/03
Re: [spctools-discuss] Re: Mascot2XML issues
alastair.skeffington via spctools-discuss
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2018/08/31
Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity
Adam Rabalski
-
2018/08/31
Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity
Adam Rabalski
-
2018/08/31
Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity
Adam Rabalski
-
2018/08/31
Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity
David Shteynberg
-
2018/08/31
Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity
Adam Rabalski
-
2018/08/31
Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity
David Shteynberg
-
2018/08/31
Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity
Adam Rabalski
-
2018/08/31
Re: [spctools-discuss] Re: Mascot2XML issues
David Shteynberg
-
2018/08/31
Re: [spctools-discuss] Re: Mascot2XML issues
alastair.skeffington via spctools-discuss
-
2018/08/31
Re: [spctools-discuss] Re: Mascot2XML issues
alastair.skeffington via spctools-discuss
-
2018/08/30
Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity
Adam Rabalski
-
2018/08/30
Re: [spctools-discuss] Re: Mascot2XML issues
David Shteynberg
-
2018/08/30
[spctools-discuss] LibraPeptideParser double free or corruption (GNU/Linux) - TPP v5.2.0-b1
Jhoira Sakura
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2018/08/30
[spctools-discuss] Mapping disulfide bonds using Kojak
Eduardo Kitano
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2018/08/30
Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity
David Shteynberg
-
2018/08/30
[spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity
Adam Rabalski
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2018/08/30
Re: [spctools-discuss] Re: Mascot2XML issues
alastair.skeffington via spctools-discuss
-
2018/08/29
Re: [spctools-discuss] Re: Mascot2XML issues
David Shteynberg
-
2018/08/29
Re: [spctools-discuss] Re: Mascot2XML issues
alastair.skeffington via spctools-discuss
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2018/08/29
Re: [spctools-discuss] Re: Mascot2XML issues
David Shteynberg
-
2018/08/29
[spctools-discuss] Re: Mascot2XML issues
alastair.skeffington via spctools-discuss
-
2018/08/29
[spctools-discuss] Mascot2XML issues
alastair.skeffington via spctools-discuss
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2018/08/29
[spctools-discuss] Re: Tools for search results comparisons
alastair.skeffington via spctools-discuss
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2018/08/23
[spctools-discuss] TPP course Orlando Sep 25-29
Eric Deutsch
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2018/08/21
[spctools-discuss] Re: Multi-threaded Protein Prophet
Adam Rabalski
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2018/08/20
[spctools-discuss] Re: Convert mgf to mzML/mzXML
Adam Rabalski