Dear James
There is no excuse for this intrusion, please refrain from making
this another digital goat marked.
cheers
Preben
On 3/4/14 2:51 PM, James Bull wrote:
Original Message
Original Message
Subject:
Akta Service
Date:
Tue, 04 Mar 2014 10:44:09 +
From:
sa...@holm
On Tue, Mar 04, 2014 at 01:33:58PM +0800, wu donghui wrote:
>
> Here I attached the config.log file for your help. I have tried to use
> either gcc-4.2.1 (Applications/Xcode.app/Contents/Developer/usr
> --with-gxx-include-dir=/usr/include/c++/4.2.1), or
There is some confusion here. The number 4.
On Tuesday, 04 March 2014 01:33:58 PM wu donghui wrote:
> Dear Tim,
>
> Here I attached the config.log file for your help. I have tried to use
> either gcc-4.2.1 (Applications/Xcode.app/Contents/Developer/usr
> --with-gxx-include-dir=/usr/include/c++/4.2.1), or
> g++-4.2.1(/Applications/Xcode.app/
Dear Tim,
Here I attached the config.log file for your help. I have tried to use
either gcc-4.2.1 (Applications/Xcode.app/Contents/Developer/usr
--with-gxx-include-dir=/usr/include/c++/4.2.1), or
g++-4.2.1(/Applications/Xcode.app/Contents/Developer/usr
--with-gxx-include-dir=/usr/include/c++/4.2.1
BTW, we got one report from a sysadmin who has built ccp4
using Clang (Apple compiler 5.0) + gfortran 4.8 from:
http://gcc.gnu.org/wiki/GFortranBinaries#MacOS
So it's likely that at least one lab is using CCP4 built with Clang.
I'm not aware of any benchmarks, though.
Marcin
On Mon, Mar 03, 2014
Hi
I think you must be doing something wrong if you can't run Mosflm from the ccp4
binary install - it runs for me. How are you trying to run it?
If you need the compilers to build Mosflm then I *very* strongly recommend
using the compilers I mentioned in my earlier e-mail - they are what the
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Dear Donghui,
did you already take a look into config.log to read the error message
why your gcc-compiler does not work? You should start at the end of the
log file and scroll backwards until you find the error message.
Best,
Tim
On 03/03/2014 03:51
-- Forwarded message --
From: wu donghui
Date: Mon, Mar 3, 2014 at 10:44 PM
Subject: Re: [ccp4bb] CCP4-6.4.0 source code building failed in Mac OS X
10.8.5
To: Marcin Wojdyr
Dear Marcin,
The reason that I want to build from source is that running ipmosflm can
not be done from b
Hi
If trying to build on Macs (OSX 10.5 - 10.9) I strongly recommend installing
either the High Performance Computing gcc/gfortran or investing in the Intel
Compilers.
http://hpc.sourceforge.net/
http://software.intel.com/en-us/intel-compilers (if you have )
Performance-
-- Forwarded message --
From: wu donghui
Date: Mon, Mar 3, 2014 at 7:07 PM
Subject: Re: [ccp4bb] CCP4-6.4.0 source code building failed in Mac OS X
10.8.5
To: Marcin Wojdyr
Dear Marcin,
Yes, I set CC=gcc-4.2.1 in cj.rc file or type in command line.
As is shown, it can identify
"reverse translation" from protein to nucleotide does not yield a unique
sequence. Your best bet is to use the BLAST feature that searches your protein
sequence against the entire genbank DNA database translated into protein:
http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?PROGRAM=tblastn&PAGE_TYPE=
-- Forwarded message --
From: Sumita Karan
Date: Mon, Jan 13, 2014 at 1:00 PM
Subject: DNA sequence from amino acid
To: CCP4BB@jiscmail.ac.uk
Dear all,
I am working on eukaryotic protein and have the amino acid sequence of the
protein but do no know the sequence of cloned gene.
D
: [ccp4bb] Fwd: undefined edensity blob at glutamine
sidechain
dear all:
I. i am not able to fit trp,
since
1. trp doesnt fit well
2. positive density comes in fo-fc map after refinement
3. this is a soaked crystal str with heavy atom soln, the native one has
perfect density for gln, so mutation to trp
Priyank,
I think it's too far out from the Calpha to be Trp, and also not quite
flat enough. The map contains more information than just the shape as
to identity. Compare the max peak height of the 2Fo-Fc blob near the
Gln to neighboring element heights.
Much higher than C/N/O ? Probably
;
> Best,
>
> Herman
>
> __ __
>
> *Von:*CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK
> <mailto:CCP4BB@JISCMAIL.AC.UK>] *Im Auftrag von *Matthias Zebisch
> *Gesendet:* Dienstag, 10. Dezember 2013 14:21
> *An:* CCP4
Gesendet: Dienstag, 10. Dezember 2013 14:21
An: CCP4BB@JISCMAIL.AC.UK
Betreff: Re: [ccp4bb] Fwd: undefined edensity blob at glutamine sidechain
check an anomalous map!
The obvious thing to do to rule out gold binding
-
Dr. Matthias Zebisch
Division of
check an anomalous map!
The obvious thing to do to rule out gold binding
-
Dr. Matthias Zebisch
Division of Structural Biology,
Wellcome Trust Centre for Human Genetics,
University of Oxford,
Roosevelt Drive,
Oxford OX3 7BN, UK
Phone (+44) 1865 287549;
Fax
Well the density strongly suggests a Tryptophan side chain.
Sometimes discrepancies ("errors") appear in sequences. How certain are
you of the accuracy of your sequence?
HTH,
Fred.
On 10/12/13 13:44, PriyankMaindola wrote:
dear members
i am trying to solve this crystal structure but
I a
I am forwarding the meeting announcement below for your possible interest.
From: Dorit Hanein
We are pleased to announce the first International Conference on Image Analysis
in Three-dimensional Cryo-EM, to be held at Granlibakken Conference Center,
Lake Tahoe, California, March 12 to March 1
I would like to thank all the people who answered my question. I can forward a
summary upon request.
Best,
Valerie
Le 29 nov. 2013 à 11:02, Valerie Biou a écrit :
> Dear all,
>
> We are looking for a robot to mix solutions and prepare optimisation plates
> for crystallisation.
> Ideally, t
*Dear Eleanor,
There is a reason why I do not provide a routine to go from the .phs
from shelxe to .mtz. If he uses the 'free lunch' option
in shelxe he may finish up refining against the free lunch structure
factors. According to one user who managed to do this
by accident, this gives excellent
It should be printed at the end of the log file
P.R.Evans and G.N.Murshudov, 'How good are my data and what is the
resolution?' Acta Cryst. D69, 1204-1214 (2013).
Phil
On 8 Nov 2013, at 11:35, Zheng Zhou wrote:
> Dear all
>
> I am also looking for aimless reference. Which paper should I ci
Dear all
I am also looking for aimless reference. Which paper should I cite? Thanks
for the powerful tools for the community.
Best,
Joe
On Sun, Feb 24, 2013 at 9:58 PM, Morten Groftehauge wrote:
> Hi guys,
>
> In the log from Aimless the only reference mentioned is the 1994 CCP4
> paper and
Thanks for the help, the issue is solved. Here a short summary in case anybody
else has the same problem:
1) Add pointer atom in Coot NH2 and create link to C-terminal residue
2) create cif file with correct link description
3) modify LINK record in PDB to correct residues/ link name
4) refine in
*Post-Doctoral Position in Biophysics at the University of Gothenburg,
Sweden
*A postdoctoral research positions is available from the beginning of 2014
in the biomolecular dynamics group of Dr. Gergely Katona at the Department
of Chemistry and Molecular Biology, University of Gothenburg, Sweden.
R
Dear Wei,
It seems that coot detects some discrepancies between cif file and your
ligand. It is not uncommon that the program used to generate your ligand
pdb produces atom definitions that are not correctly read by programs
used to generate restrains, such as PRODRG. In order to overcome the
horombic lattice.
D
From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Dom Bellini
[dom.bell...@diamond.ac.uk]
Sent: 03 October 2013 08:21
To: ccp4bb
Subject: Re: [ccp4bb] Fwd: [ccp4bb] Fwd: [ccp4bb] expanding reflections from
C2221 to P21
QUICK ERRATUM
Sorry W, I forgot a v
: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Ethan A Merritt
[merr...@u.washington.edu]
Sent: 03 October 2013 00:53
To: ccp4bb
Subject: Re: [ccp4bb] Fwd: [ccp4bb] Fwd: [ccp4bb] expanding reflections from
C2221 to P21
On Wednesday, 02 October, 2013 17:31:06 wtempel wrote:
> Tim,
ing it as a fresh molecular replacement problem?
Ethan
> For that
> purpose, I would prefer a comparison of refinement in C2221 and P21 with
> properly transfered free flags. I just do not know how to accomplish that
> transfer.
> W.
>
> -- Forwarded mes
do this.
HTH
D
From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of wtempel
[wtem...@gmail.com]
Sent: 02 October 2013 22:31
To: ccp4bb
Subject: [ccp4bb] Fwd: [ccp4bb] Fwd: [ccp4bb] expanding reflections from C2221
to P21
Tim,
I agree with your
P21 with
properly transfered free flags. I just do not know how to accomplish that
transfer.
W.
-- Forwarded message --
From: Tim Gruene
Date: Wed, Oct 2, 2013 at 4:13 PM
Subject: Re: [ccp4bb] Fwd: [ccp4bb] expanding reflections from C2221 to P21
To: wtempel
Cc: CCP4BB@jiscmail.ac.uk
-
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Dear W.,
if P21 is a proper subgroup of C2221, scaling a P21 data set in C2221
would try to make non-equivalent reflections equal, would it not? I
would reintegrate the data in the correct point group and scale in the
correct space group.
Best,
Tim
Hello Appu and Boaz,
my suspicion arises from failure to refine (as in reducing crystallographic
R-factor from the 40%s) a related, virtually isomorphous crystal structure
in the original C2221 setting. Scaling statistics are very nice even in
C2221. If I drop the symmetry to P21, the R-factor drop
Thanks, Randy.
Molrep must be failing due to some other flaw in my procedure, as it
clearly uses the P21 cell, as evidenced by the output CRYST1 and ViewHKL in
qtRView of ccp4i.
Can you suggest any alternative procedures that would expand that
C-centered data set into the primitive setting?
W.
---
I've had good luck using the CCP4 DM program PARROT to improve poor
initial MR maps with twinned data. (Based on some suggestions from this
bb.) I think it works especially well if you have a lot of NCS symmetry,
but it's worth a try, and doesn't take long.
Cheers,
___
I would try phase improvement, especially since you have
two molecules per a.u. In other words averaging, solvent
flattning, histogram matching. The best way is to start at
low(er) resoltuion and extend to the highest resolution
vailable. The best criterium for success is a improved and
interpretab
*Please find below a job offer for a research assistant at the Institut Curie
in Orsay, France.
*
An immediate opening for a research assistant (ingénieur d'études) is availablein the
Department of"Signalling, Neurobiology and Cancer" at the Institut Curie,
Orsay, France, in the Lab of Carsten
programs do have an option to automatically test all possible space
groups.
Good luck!
Herman
Von: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] Im Auftrag von MONICA
MITTAL
Gesendet: Dienstag, 13. August 2013 07:57
An: CCP4BB@JISCMAIL.AC.UK
Betreff: [ccp4bb
-- Forwarded message --
From: "Roger Rowlett"
Date: Aug 10, 2013 12:01 PM
Subject: Re: [ccp4bb] Xtal formed during purification
To: "ZHIZHI WANG"
Cc:
When I worked with S. typhimurium tryptophan synthase, it would crystallize
directly from the crude lysate during ammonium sulfate
PS Please consult http://support.apple.com/kb/ht3696 for how to determine your
CPU type. Many thanks -- Eugene
Begin forwarded message:
From: Eugene Krissinel
mailto:eugene.krissi...@stfc.ac.uk>>
Date: 12 July 2013 12:47:26 GMT+01:00
To: mailto:CCP4BB@JISCMAIL.AC.UK>>
Subject: [ccp4bb] CCP4 Sup
Dear Rain Field,
A new xia2 release is now available please see:
http://xia2.blogspot.com
for details. This version should be included in the next CCP4 update.
Once again apologies for the inconvenience.
Best wishes,
Graeme
On 4 July 2013 08:18, Graeme Winter wrote:
> Dear Rain Field,
>
>
*Technical Key Account Managers - 3 positions currently available*
To meet increasing customer demand Microlytic is hiring individuals with a
strong scientific background for serving our growing base of large academic
and industrial accounts in the USA. The technical key account managers will
be t
-BEGIN PGP SIGNED MESSAGE-
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Dear Swastik Phulera,
if your res-file sports negative U-values, your model has room for
improvement. You really should go back to the ins-file and make the
appropriate modifications in order to get rid of negative U-values
(the do not make chemical s
If you are resetting B factors you must recalculate the AniosUs later
But if you are getting negative B values something in your procedure is
less than optimal!
Are you refining aniso Us with too limited data? You need high resolution
data to attempt this.
Are you trying to refine B factors and
Dear Tim,Fred
Negative B factors and occupancies higher than one came in from shelxl,
Also getting rid of Ansiou at first would lead me to an additional step of
placing them in their right place later on (is there a short cut that I may
take).
On Tue, Jun 11, 2013 at 2:09 PM, Tim Gruene wrote:
In Windows:
findstr /b /v ANISOU input.pdb > output.pdb
Cheers,
Robbie
> -Original Message-
> From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
> Tim Gruene
> Sent: Tuesday, June 11, 2013 10:40
> To: CCP4BB@JISCMAIL.AC.UK
> Subject: Re:
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Dear Swastik Phulera,
unless you need the ANISOU cards, you can first remove them with e.g.
grep -v "^ANISOU" youfile.pdb > yournewfile.pdb
before running pdbset.
(I hope you don't work on a Windows machine, then you would probably
first find a way
What about getting rid of the ANISOU records before processing the pdb
file, with
grep -v ANISOU input.pdb > output.pdb
?
If a program complains about ANISOU records then you use the isotropic
approximation...
That's what I would do as a quick and dirty fix.
Fred.
On 11/06/13 10:22, Swast
-- Forwarded message --
From: Swastik Phulera
Date: Tue, Jun 11, 2013 at 1:51 PM
Subject: Re: [ccp4bb] pdbset
To: Tim Gruene
Dear Tim, Miguel
Thanks for your suggestions, the program does work now, but it seems that
it cant handle AnsioU s . It gives an error:
PDBSET: *** Anis
.AC.UK] On Behalf Of Colin Nave
Sent: 15 May 2013 22:17
To: ccp4bb
Subject: Re: [ccp4bb] Fwd: Re: [ccp4bb] reference for "true multiplicity"?
Times up!
The 3rd case I had in mind was the presence of anisotropy of the anomalous
scattering in the presence of a polarised beam. John Helli
guess it would also apply to Latin) language.
Colin
-Original Message-
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Colin Nave
Sent: 15 May 2013 10:21
To: ccp4bb
Subject: Re: [ccp4bb] Fwd: Re: [ccp4bb] reference for "true multiplicity"?
Oh – I seemed to ha
The traditional benefit was in reducing absorbtion errors. This obviously
depends on crystal path, and seeing it is hard to model well, one way to
mitigate the errors was to average equivalents collected at different
settings. The error was still there, but assuming random distribution about
the tr
Oh – I seemed to have diverted Frank’s thread.
Fortunately most languages themselves are highly redundant, with following
characters and words being quite predictable. The entropy and redundancy of
English language was analysed by Shannon (with the help of his wife) and he
obtained figures of
One day many years ago, my Ph.D. students all appeared wearing T-shirts
with the logo
"We want more redundancy". They had clearly got the message about how to
do sulfur
SAD phasing, but were completely unaware of the usual meaning of the
word in the UK!
George
--
Prof. George M. Sheldrick FRS
ments
under different conditions, the effect of these systematic errors
will be minimised.
Can anyone suggest other sources of error which would be mitigated
by having different paths through the crystal. I don't think
radiation damage (mentioned by several people) is one.
Colin
From
e) is one.
>
> Colin
>
> From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Frank
> von Delft
> Sent: 14 May 2013 14:23
> To: ccp4bb
> Subject: [ccp4bb] Fwd: Re: [ccp4bb] reference for "true multiplicity"?
>
> George points out that the
Behalf Of Frank von
Delft
Sent: 14 May 2013 14:23
To: ccp4bb
Subject: [ccp4bb] Fwd: Re: [ccp4bb] reference for "true multiplicity"?
George points out that the quote I referred to did not make it to the BB --
here we go, read below and learn, it is a most succinct summary.
phx
--
y having
> different paths through the crystal. I don't think radiation damage
> (mentioned by several people) is one.
>
> Colin
>
> From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Frank
> von Delft
> Sent: 14 May 2013 14:23
> To: ccp4bb
> Subje
Colin wrote:
> Can anyone suggest other sources of error which would be mitigated by having
> different paths through the crystal. I don't think radiation damage
> (mentioned by several people) is one.
Suggestion : any source of error which does not obey the crystal symmetries
will benefit from
K] On Behalf Of Frank von
Delft
Sent: 14 May 2013 14:23
To: ccp4bb
Subject: [ccp4bb] Fwd: Re: [ccp4bb] reference for "true multiplicity"?
George points out that the quote I referred to did not make it to the BB --
here we go, read below and learn, it is a most succinct summary.
phx
--
George points out that the quote I referred to did not make it to the BB
-- here we go, read below and learn, it is a most succinct summary.
phx
Original Message
Subject:Re: [ccp4bb] reference for "true multiplicity"?
Date: Tue, 14 May 2013 09:25:22 +0100
From: Fran
-- Forwarded message --
From: megha goyal
Date: Mon, May 6, 2013 at 1:16 PM
Subject: bioassay g-csf
To: CCP4BB@jiscmail.ac.uk
we perform bioassay of g-csf using m-nfs-60 cell lines but we do not get
reproducible results. some time a sample fails and on repeating the assay
for sam
*Structural Biologist *
*Location: Central London, UK*
*12 month fixed-term contract*
*Salary dependent on experience*
**
Cancer Research Technology (CRT) is a specialist drug discovery,
technology transfer and commercialisation company which aims to advance
new discoveries to beat cancer. At
Dear all,
Please find below the announcement of the MISSCA meeting 2013 which will be
held in Como (Italy) next September.
Best wishes,
Maria.
Dear All,
I am pleased to draw you attention on the *First Meeting of the Italian,
Spanish and Swiss Crystallographic Associations*. Organised in the
Not sure why I keep getting this message from an email id in korea (see
below). Are other members getting this email as well? Is someone someone at
ccp4bb able to stop this id from spamming me everytime I send emails to the
BB.
Thanks.
Raji
-- Forwarded message --
From:
Date: 20
Apologies for everybody, the previous message was sent to BB by mistake, please
disregard.
Eugene Krissinel
Begin forwarded message:
Date: 16 March 2013 11:25:08 GMT
To: mailto:andrey.lebe...@stfc.ac.uk>>
Cc: mailto:CCP4BB@JISCMAIL.AC.UK>>
Subject: Re: [ccp4bb] CCP4 Update 019
Spasibo Andrey,
I forgot to reply to CCP4BB, but this could be interesting not just for Eugene.
Dear Eugene,
I have a couple of questions about images compression and storage:
1)do someone use it in routine work and does it works well for them?
->Yes, in Utrecht we do routinely compress images (ncompress). Ou
Dear Users,
I am forwarding the reminder mail from ALS to submit your proposal for the
CC time and general user time at ALS. Please submit your proposals before
time.
Thanks
Banu
FINAL REMINDER: CALL FOR GENERAL USER PROPOSALS AT THE ALS
The User Services Office is accepting General User Prop
Hi guys,
In the log from Aimless the only reference mentioned is the 1994 CCP4 paper
and then "as well as any specific reference in the program write-up."
First of all, is this the correct CCP4 reference to use?
And second of all, since running Aimless through the interface always
invokes Pointles
Dear Jacob,
As mentioned before by Frank, many insect viruses use in vivo crystals as
their main infectious form:
*The molecular organization of cypovirus polyhedra.* Nature 446, 97–101
(2007). Coulibaly, F. et al.
*The atomic structure of baculovirus polyhedra reveals the independent
emergence of
On Mon, Feb 4, 2013 at 12:24 PM, Roger Rowlett wrote:
> It's possibly a transition metal ion. Zinc is a common adventitious
> contaminant of solutions. Typical Zn-O distances (tetrahedral or
> pseudo-tetrahedral coordination) are 2.0 A. ICP-OES or ICP-MS of the protein
> solution might offer a clu
It's possibly a transition metal ion. Zinc is a common adventitious
contaminant of solutions. Typical Zn-O distances (tetrahedral or
pseudo-tetrahedral coordination) are 2.0 A. ICP-OES or ICP-MS of the
protein solution might offer a clue to the possible identity of the
metal ion, since it appea
Hello all,
I have recently solved a 2.0 angstrom resolution structure. The structure
is near complete but I have some unusual density at the crystallographic
interface between two chains of different asymmetric units. The linked
photos show the density at with a Fo-Fc at 3 sigma and 2Fo-Fc at 1
Dear Colleagues,
We are pleased to announce the sixth annual CCP4 summer school at Advanced
Photon Source (APS), Argonne National Laboratory (ANL). All details can be
found at http://www.ccp4.ac.uk/schools/APS-2013/index.php
Title:
"CCP4 school: From data collection to structure refin
Normally the input files for Labelit must have sequential numbering
like lysozyme_001.cbf. The file name "DX-CORRECTIONS.cbf" causes the
reported error as it does not conform to this format.
Nick
On Fri, Jan 11, 2013 at 9:51 AM, Tim Gruene wrote:
> -BEGIN PGP SIGNED MESSAGE-
> Hash: SHA
-BEGIN PGP SIGNED MESSAGE-
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The formatting of icedove probably created confusion, but these error
message come from running labelit.png WITH the file DX-CORRECTIONS.cbf
as one and only command line option and no output is created. adxv has
not problem dealing with XDS cbf-files.
I think the help message refers to another program. Anyway, it's an
extremely simple script - having examined the code, the command-line
invocation is:
labelit.png input_file [output_file]
and that's it - no other options available. But Nick or I will fix it
so it prints something more useful i
I got that error blurb too when I run without an image on the
commandline. Not very elegant.
Try:
labelit.png --help
On 11/01/2013 16:34, Tim Gruene wrote:
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Hi Nat!
How recent is recent? From today's 'phenix-online.org':
"New Phenix version
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Hi Nat!
How recent is recent? From today's 'phenix-online.org':
"New Phenix version 1.8.1 now available", but
tg@slartibartfast:~/uni/datasets/nk/xds_run3$ labelit.png_1.8.1-1168
DX-CORRECTIONS.cbf
Traceback (most recent call last):
File
"/xtal/Sui
Brilliant - thanks Nat!! Easy to work around that feature.
And thanks Nick!!
Original Message
Subject:Re: [ccp4bb] Convert cbf to png/tiff?
Date: Thu, 10 Jan 2013 12:47:21 -0800
From: Nat Echols
To: Frank von Delft
Using any recent Phenix distribution:
That's because they are Harker peaks which for good reasons are
unsuitable as translation search vectors. The Patterson function is well
explained in many of the standard crystallographic texts (e.g.
Giacovazzo's book that I already recommended) and maybe you need to read
these before asking your n
Dear professor George Sheldrick,
I am so sorry to bother you again!
From the shelxc_fa.lst file, we can find that the Patterson peaks will be
selected only when the 'Mult' equal to 1..
shelxc_fa.lst:
Patterson (* indicates vector selected for search)
X Y ZHeight Mult
Begin forwarded message:
> From: "Randy Schekman"
> Subject: The eLife journal is now online.
> Date: December 13, 2012 10:00:09 AM PST
> To: Axel Brunger
> Reply-To: "Randy Schekman"
>
> Dear Axel,
>
> In June 2011, three of the most prestigious research funding bodies in the
> world came
Dear professor George Sheldrick,
Thank you very much for your prompt and patient reply.
I think I can solve my problem now.
Thanks again!
Best regard!
Ding wei
At 2012-12-07 19:14:46,"George Sheldrick" wrote:
Dear Ding Wei,
The Patterson function is discussed in most crystallographic text b
Dear Ding Wei,
The Patterson function is discussed in most crystallographic text books.
I recommend the IUCr text by Giacovazzo et al., "Fundamentals of
Crystallography" starting about page 423 in the third edition for a
detailed discussion. If you just require a sorted peak list, shelxd is
a
May I add a little note:
"Dewar" reads as a destructive device.
"Thermos" reads as thermos, which the dewar is except for no relation
to the Thermos trademark.
Good luck,
Boris Brumshtein
-- Forwarded message --
From: Felix Frolow
Date: Tue, Nov 6, 2012 at 1:32 PM
Subject: Re:
With permission from Nick Keep to forward to the bb which I am doing
right now :-)
If I may add: an organization advertising for a rigged job but not
reimbursing the candidate's expenses is, in my opinion, wrong doing. I
have never seen this happen in the UK but this has happened elsewhere...
One of the hardest things for an author, and a handling Editor, is making sure
that the references list of a submitted article is complete, but is an easier
task now with our e-tools than in the days of the penicillin discovery. Another
case is that of Einstein's special theory article of 1905 w
On Fri, Oct 19, 2012 at 2:20 PM, Jrh wrote:
> Dear Colleagues,
> A different type of, post publication, fraud is the case of the discovery
> of streptomycin. See :-
>
> http://www.thelancet.com/journals/lancet/article/PIIS0140-6736(12)61202-1/fulltext
>
I can't resist posting this quite interes
Dear Colleagues,
A different type of, post publication, fraud is the case of the discovery of
streptomycin. See :-
http://www.thelancet.com/journals/lancet/article/PIIS0140-6736(12)61202-1/fulltext
I am just returned from the ICSTI Conference on Science, Law and Ethics in
Washington DC represent
Begin forwarded message:
Date: October 19, 2012 4:40:35 AM EDT
To: Randy Read mailto:rj...@cam.ac.uk>>
Subject: Re: [ccp4bb] PNAS on fraud
This thread has been quite interesting to me. I've had a long interest in
scientific fraud, which I've generally held to be victimless. While that view
is
Dear Nicolas
ATP crystals is a reasonable answer. Thank you very much.
Best regard
Chang
2012/10/12 Nicolas Foos :
> Dear Chang,
>
> i have seen ATP diffraction, it's not very different of your image. Maybe
> you have only ATP in your crystals?
>
> Best regard
>
> Nicolas
>
> Le 12/10/12 14:56,
Dear Chang,
i have seen ATP diffraction, it's not very different of your image.
Maybe you have only ATP in your crystals?
Best regard
Nicolas
Le 12/10/12 14:56, Chang Qing a écrit :
Dear Tim
I think your explanation is logical. But I tried ADP as ligand first
and got crystals and diffracti
Seeing Herman's message reminds me that I forgot to send this reply to the BB
as well.
Herman makes many of the same points, and a very good additional point that you
want to examine whether the molecular replacement solution in the lower
symmetry space group actually has the higher symmetry.
Ikerbasque, the Basque Foundation for
Science (Europe), would like to inform you that we have
launched an international call to attract 20 senior
researchers to the Basque Country (permanent
p
Begin forwarded message:
> From: Eleanor Dodson
> Subject: Re: [ccp4bb] CC1/2, XDS and resolution cut off
> Date: 8 August 2012 10:10:55 GMT+01:00
> To: Marcus Fislage
> Cc: CCP4BB@JISCMAIL.AC.UK
>
> Like Ian, I tend to use as much data as is reasonable - but it is useful to
> look at the
Dear Colleagues,
Does anyone have access to this article? It is not in my library and they
cannot find it via interlibrary loan. I know the limitations and that it
is best not to ask papers via the newsgroup but I have even tried to ask
the author for a reprint and my email was returned to me.
> Subject: Re: [ccp4bb] offtopic: packing gel filtration columns
>
> We do it pretty routinely in our lab with great results. To do it right you
> have to invest in a reservoir sold by GE. It screws onto the end of the
> column. It allows you to pour the entire slury (resin and water) into the
Add DNA?
Also, polydispersity is not great for crystallization but may not be
the end of the world :)
Artem
On Mon, Jun 18, 2012 at 4:52 AM, Arpit Mishra wrote:
>
>
> Dear CCP4BB members
>
> Sorry for off topic, i had question related to dispersity of proteins of my
> interest, i am working on
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