[Rpy] rpy2-3.4.5 is released and on pypi

Hi, rpy2-3.4.5 is released and on pypi. If using rpy2 in web app (e.g., with Flask or Django) and annoying bug was fixed. Release notes: https://rpy2.github.io/doc/v3.4.x/html/changes.html#release-3-4-5 Best, Laurent ___ rpy-list mailing list rpy-lis

[Rpy] rpy2-3.4.3 is released and on pypi

Hi, rpy2 3.4.3, a bugfix release in the 3.4.x series, is released and on pypi. Changes are listed here: https://rpy2.github.io/doc/v3.4.x/html/changes.html#release-3-4-3 Best, Laurent ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lis

[Rpy] rpy2-3.4.2 is release and on pypi

Hi, rpy2-3.4.2 is released. This is a bugfix release mostly addressing an issue with multithreading. The changelog is here: https://rpy2.github.io/doc/v3.4.x/html/changes.html#release-3-4-2 Best, Laurent ___ rpy-list mailing list rpy-list@lists.sourcef

[Rpy] rpy2-3.4.0 is released and on Pypi.

Hi, rpy2-3.4.0 is released and on Pypi. In addition to the source package binary wheels for MacOS (Python versions 3.7 and 3.8) are also made available. If using R-4.0 or greater and updated is recommended, and may be even necessary. The full changelog is in here: https://rpy2.github.io/doc/v3.4

[Rpy] rpy2-3.3.6 is released and in pypi

Hi, rpy2-3.3.6 is released an on pypi. This is a minor bugfix release with the following changes: - The unit tests for importing R packages with `lib_loc` were broken (issue #720). - Trying to create a memoryview for an R array with complex values was failing with an attribute error. - Fix the

[Rpy] rpy2-3.3.5 is released and on pypi

Hi, rpy2-3.3.5 is released and on pypi. This bugfix release fixes just one but annoying bug with the callback meant to capture input for R (that is R asking for an user to enter an answer on the keyboard). Laurent ___ rpy-list mailing list rpy-list@list

[Rpy] rpy2-3.3.4 is released and on pypi.

Hi, rpy2-3.3.4, a bugfix release in the 3.3.x series, is released and on pypi. Laurent ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list

[Rpy] rpy2-3.3.2 is released and on pypi.

Hi, rpy2-3.3.2 is released and on pypi. The changelog is here: https://rpy2.github.io/doc/v3.3.x/html/changes.html#release-3-3-2 Best, Laurent ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list

[Rpy] rpy2 3.3.0 and 3.3.1 are released and on pypi.

rpy2-3.3.0 and 3.3.1 are released and on pypi. This brings compatibility with pandas >= 1.0. The Changelog is here: https://rpy2.github.io/doc/v3.3.x/html/changes.html#release-3-3-1 ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.so

[Rpy] rpy2-3.2.7 is released and on pypi.

Hi, rpy2-3.2.7 is released and on pypi. This is solely fixing a compatibility issue with Python 3.5. The next release will normally be rpy2-3.3.0, and should happen quite soon. Best, Laurent ___ rpy-list mailing list rpy-list@lists.sourceforge.net http

Re: [Rpy] Deleting old doc pages for rpy2-2.0.x from Sourceforge

Actually I am deleting all rpy2 from Sourceforge (all is outdated / related to too old releases). Le dim. 26 janv. 2020 à 16:40, Laurent Gautier a écrit : > Hi, > > The old doc pages for rpy2-2.0.x are being deleted from Sourceforge. > Search engines are still returning these page

[Rpy] Deleting old doc pages for rpy2-2.0.x from Sourceforge

Hi, The old doc pages for rpy2-2.0.x are being deleted from Sourceforge. Search engines are still returning these pages in results and this is creating confusion among users. Best, Laurent ___ rpy-list mailing list rpy-list@lists.sourceforge.net https:

[Rpy] rpy2 3.2.5 is released.

#rpy2 3.2.5 is released and on pypi. It fixes a breaking change upstream (latest R package `rlang`) and should make it work again with Python 3.5. https://rpy2.github.io/doc/v3.2.x/html/changes.html#release-3-2-5

Re: [Rpy] rpy2-3.2.x is released and on Pypi.

rpy2-3.2.4 is out and on pypi, fixing a typo that prevented the ABI mode from working. Le sam. 14 déc. 2019 à 18:24, Laurent Gautier a écrit : > This is a bugfix release in the 3.2.x release. The only fix it contains is > about a segfault sometimes occuring when parsing a R string that co

[Rpy] rpy2-3.2.x is released and on Pypi.

This is a bugfix release in the 3.2.x release. The only fix it contains is about a segfault sometimes occuring when parsing a R string that contains an error. ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/lis

Re: [Rpy] rpy2-3.2.2 released and on pypi

[slightly less garbled version] Hi, rpy2-3.2.2 is released an on pypi. The only additional fixes compared to 3.2.1 are about better handling failure to build or install (now it tells why it fails). L. Le dim. 3 nov. 2019 à 11:11, Laurent Gautier a écrit : > Hi, > > rpy2-3.2.2 is re

[Rpy] rpy2-3.2.2 released and on pypi

Hi, rpy2-3.2.2 is released an on pypi. The only additional fixes compared to 3.2.1 are better handle of failures of failure to build or install (now it tells why it fails). L. ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.source

[Rpy] rpy2-3.2.1 is released and on pypi.

Hi, rpy2-3.2.1 is released and on pypi.This is the first bugfix release in the 3.2.x series, and the list of changes is here: https://rpy2.github.io/doc/v3.2.x/html/changes.html#release-3-2-1 Best, Laurent ___ rpy-list mailing list rpy-list@lists.sourc

[Rpy] rpy2-3.2.0 is released and on pypi

Hi, rpy2-3.2.0 is released and on pypi. This fixes UTF-8 strings in R code, and adds an optional #cffi API-mode interface to R. The list of changes is here: https://rpy2.github.io/doc/v3.2.x/html/changes.html#release-3-2-0 Best, Laurent ___ rpy-list ma

[Rpy] rpy2-3.1.0 is released and on pypi

Hi, Rpy2-3.1.0 is released and on pypi. If using the latest ggplot2 release, multithreading, or pandas with NA values for integers or dates that's an update you'll want to make now. A more complete changelog is in the doc as usual: https://rpy2.github.io/doc/v3.1.x/html/changes.html#relase-3-1-0

[Rpy] Find a new home for the main source repository

Hi, Atlassian has announced the end of support for Mercurial repositories, so rpy2 will have to find a new home for its main source repository: https://bitbucket.org/rpy2/rpy2/issues/578 L. ___ rpy-list mailing list rpy-list@lists.sourceforge.net http

[Rpy] rpy2-3.0.5

rpy2-3.0.5 is released and on pypi. The short list of changes for the bugfix release is here: https://bitbucket.org/rpy2/rpy2/src/version_3.0.x/NEWS ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-

[Rpy] rpy2-3.0.4 is released and on pypi.

rpy2-3.0.4 is released and on pypi. It is fixing an issue when converting some of the pandas DataFrames introduced by changes in recent releases of pandas. ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listin

[Rpy] rpy2-3.0.2 is released and on pypi.

Hi, rpy2-3.0.2 is released and on pypi. Changes are listed here: https://rpy2.github.io/doc/v3.0.x/html/changes.html#relase-3-0-2 Best, L. ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list

[Rpy] rpy2-3.0.1 is released

The first bugfix release in the 3.0.x series is already out and on Pypi. It fixes a segfault when converting R arrays to numpy arrays. ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list

[Rpy] rpy2-3.0.0 is released

Hi, rpy2-3.0.0 is released and on pypi. This is a complete rewrite of the C extension code to use cffi. cffi and ABI level means that no compilation is required (and may be it will also work on pypy). The doc is here: https://t.co/7MVmn8EZt0 Note that it might miss some of the many changes. Cont

[Rpy] rpy2-2.9.6b is released.

Hi, rpy2-2.9.6b is released and uploaded to pypi. This is a stopgap release to address API-breaking changes in latest pandas before rpy2-3.0.0 is released. Best, L. ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/

[Rpy] rpy2-3.0.0 - Check quietly whether your code is ready now...

...or find it out when it is released and pushed to pypi, normally in few weeks from now. (Yes, this was a short message) L. ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list

[Rpy] rpy2 source is now mirrored on Git/Github

Hi, The dev branch of *rpy2* is now mirrored on Git/Github: https://github.com/rpy2/rpy2 . With this, there is a Travis build script checking that everything is fine on Linux and OS X. Best, L.

[Rpy] rpy2-2.9.5 is released

Hi, Rpy2 2.9.5 is released and on Pypi. This is a bugfix release in the 2.9.x series, and this one only contains one fix for pandas DataFrame conversion: https://bitbucket.org/rpy2/rpy2/issues/493/rpy2-conversion-of-categorical-data Best, L. ___ rpy-li

[Rpy] rpy2 is moving its C-extension to cffi

Hi, rpy2 is moving it is C-extension to a cffi-based implementation. The plan is to have ABI and API access to R, the former being for the cases where the installer's system is not setup to compile (as OSX and R release jointly made this harder according to the issue tracker). At the time of wri

[Rpy] Rpy2-2.9.2 is released and on pypi.

Hi, Rpy2-2.9.2 is released and on pypi. This bugfix release is mainly addressing issues with conversion to and from pandas data frames. Best, Laurent -- Check out the vibrant tech community on one of the world's most engagi

[Rpy] rpy2-2.9.1 released and on Pypi

Hi, rpy2-2.9.1 is out. At the time of writing the automated build of the documentation on ReadTheDocs is still not fixed. Use the backup static builds here: https://rpy2.github.io/doc/v2.9.x/html/changes.html#release-2-9-1 Best, Laurent ---

[Rpy] Considering closing rpy-list on Sourceforge.

Hi, My recent experience with the list is that my own rare posts were bouncing while waiting for moderator's approval. Upon checking what is happening I found out a list of messages waiting for approval much longer than what I have time for. The traffic on the list has become quasi-null as the ho

[Rpy] rpy2-2.9.0, rpy2 online doc.

Hi, rpy2-2.9.0 is out and on Pypi. The doc for #*rpy2* on ReadTheDocs is broken (can't build latest docs). Backup online doc with rpy2-2.9.x: https://rpy2.github.io/

[Rpy] rpy2-2.9.0 is released and on Pypi.

Hi, rpy2-2.9.0 is finally released. The interface to R and Python's respective ecosystems was upgraded. If using the Docker image, note that the content of the former image was sliced into 3 images to allow having a smaller base image. The 3 images are: rpy2/rpy2 (base), rpy2/jupyter, rpy2/polyglo

Re: [Rpy] rpy2 install on redhat 6.7

R headers cannot be found. Note that there is a warning about the R version being too old for support with that version of rpy2 ( maybe it will work, maybe it won't). On Mon, Jul 10, 2017, 11:18 AM Larry Martell wrote: > Trying to install rpy2 on redhat 6.7. I have R version 3.1.0: > > $ R --ve

[Rpy] rpy2-2.8.6 is out and on pypi

This is a maintenance bugfix release in the 2.8.x series. Release 2.8.6=Bugs fixed--- Trying to build an atomic R vector from a Python object that has a length, but is not a sequence nor an iterator was causing a segfault (issue #407 - backport from rpy2-2.9.0).- Passing param

Re: [Rpy] Output from rpy2 goes to console, not Jupyter notebook

Windows support is limited (no official support actually). Fatures such as callbacks to reroute console output are not working in Windows. Try running jupyter and rpy2 in a docker container. On Thu, May 4, 2017, 9:47 PM David Miller wrote: > I've got rpy2 and R magic working in an Anaconda Pyth

[Rpy] rpy2 release 2.8.5 is out and on pypi.

Hi, The latest bugfix release in the 2.8.x series is available on pypi. The next major release (rpy2-2.9.0) is currently likely going to only official support Python >= 3.5. Best, Laurent -- Developer Access Program fo

Re: [Rpy] RPy2 2.9.0dev segementation fault

onFromExpression > (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) > ... ok > testGet_initoptions (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) > ... ok > testInitr (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) ... ok > testInterruptR (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) ... ok > testParse

Re: [Rpy] RPy2 2.9.0dev segementation fault

demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. > > > .libPaths() > [1] "/uufs/chpc.utah.edu/sys/installdir/RLibs/3.3.2bb" > [2] "/uufs/chpc.utah.edu/sys/installdir/R/3.3

Re: [Rpy] RPy2 2.9.0dev segementation fault

Hi Wim, Segfaults can be hard to track without the ability to reproduce (not much you can do about for now, this seems something specific to your system). Do you have an environment variable R_HOME defined ? What are your LD_LIBRARY_PATH like ? Is your customized with ${R_HOME}/etc or ~/.R ? Wha

[Rpy] rpy2 will be Python-3 some time before 2020

Hi, Time to try (again) to cut the amount of maintenance needed, and use features only available in Python 3. There is an issue on bitbucket to track the progress: https://bitbucket.org/rpy2/rpy2/issues/386/support-for-python-3-only-when-does-it Best, Laurent -

[Rpy] rpy2-2.8.4 is released and on Pypi.

Hi, Rpy2-2.8.4, a bugfix release in the 2.8.x series, is out and on pypi. User-visible changes are: Release 2.8.4 = Bugs fixed -- - The context manager :func:`rpy2.robjects.lib.grdevices.render_to_file` is no longer trying to impose a file name generated by :mod:`tempfil

[Rpy] ryp2-2.8.3 is out and on pypi

Hi, ryp2-2.8.3 is out and on pypi. This is a bugfix release in the 2.8.x series. The list of changes is here: http://rpy2.readthedocs.io/en/version_2.8.x/changes.html#release-2-8-3 Best, Laurent -- ___

[Rpy] Fwd: rpy2-2.8.2 is out and on pypi

ormal python (so, not ipython notebook), that I could rotate the plot like in the R? (It is not so important, but I would be very happy, if there would be a method to do that!) Thank you very much, Gabi *From:* Laurent Gautier [mailto:lgaut...@gmail.com] *Sent:* 10 July 2016 17:26 *To:* RPy list *

[Rpy] rpy2-2.8.2 is out and on pypi

It mostly addresses issues caused when using the latest releases of 3rd-party optional dependencies (R's dplyr and ipython). Changes will be tracked at http://rpy2.readthedocs.io/en/version_2.8.x/changes.html#release-2-8-2 as soon as the rebuild of the doc is complete. Laurent ---

Re: [Rpy] Some initial problems is rpy2 & %R IPython notebook

Hi, Please first upgrade to a recent version of rpy2. The latest release is 2.8.1, and 2.8.2 should be few days away. Thanks, Laurent On Fri, Jul 8, 2016, 7:59 PM Csima, Gabriella < gabriella.cs...@metoffice.gov.uk> wrote: > Hi Everyone, > > > > I have just join this mailing group, so sorry a

Re: [Rpy] rpy2-2.8.x series

> On Jun 15, 2016 6:50 AM, "Laurent Gautier" wrote: > >> Hi, >> >> rpy2-2.8.0 was released quietly few weeks ago, followed by release 2.8.1 >> few days ago. >> >> As usual rpy2 is available on pypi, but now there is also a Docker >> containe

[Rpy] rpy2-2.8.x series

Hi, rpy2-2.8.0 was released quietly few weeks ago, followed by release 2.8.1 few days ago. As usual rpy2 is available on pypi, but now there is also a Docker container (complete with ipython/jupyter, numpy, pandas) to "kick the tires". More information can be found on the main site: http://rpy2.b

[Rpy] rpy2-2.7.8 is out and on pypi

Hi, rpy2-2.7.8 is out and on pypi: https://pypi.python.org/pypi/rpy2/2.7.8 Best, Laurent -- Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just

[Rpy] rpy2-2.7.7 released and on pypi

Hi, rpy2-2.7.7 is released and on pypi. It is addressing an issue with the conversion of pandas data frames and an issue with the pickling of robjects-level instances. That second fix is making R objects usable in Python code relying on pickling. Pyspark, the Python interface to Spark, is one such

[Rpy] rpy2-2.7.6 is released

Hi, The 6th bugfix release in the 2.7.x series is now on Pypi. The only change was required by changes in the latest release of the R package ggplot2 for which rpy2 is providing an interface in rpy2.robjects.lib.ggplot2. API breaking changes occur because of this, and while they remain minimal, r

[Rpy] rpy2-2.7.5 is out and on pypi

Hi, rpy2-2.7.5, a bug fix release in the 2.7.x series, is on pypi. Changes are in the documentation as usual: http://rpy2.readthedocs.org/en/version_2.7.x/changes.html#release-2-7-5 Best, Laurent -- __

Re: [Rpy] rmagic no longer working?

therwise. > > A+ > > On Wed, Nov 25, 2015 at 10:48 PM, Laurent Gautier > wrote: > >> Seems working here. What version of rpy2 are you using, and how do you >> load the rmagic extensions ? >> >> On Wed, Nov 25, 2015, 10:24 PM Francois Dion >> wr

Re: [Rpy] rmagic no longer working?

Seems working here. What version of rpy2 are you using, and how do you load the rmagic extensions ? On Wed, Nov 25, 2015, 10:24 PM Francois Dion wrote: > I use %R and %%R quite a lot. I've updated all my notebook instances to > jupyter 4 / ipython 4 and beside the warning, %lsmagic doesnt show %

[Rpy] rpy2-2.7.4

Hi, Rpy2 2.7.4 is released and on pypi. It mostly addresses compatibility with Python 3.5. The migration of the doc to 'readthedocs' did not generate (written) complains so we will keep it that way for now. The changelog is in the doc: http://rpy2.readthedocs.org/en/version_2.7.x/changes.html#r

[Rpy] rpy2-2.7.0 is released and on pypi

Hi, Rpy2-2.7.0, the first release in the 2.7.x is available on Pypi. Beside bug fixes (thanks to all submitters of issues, or pull requests), the notable changes are: - the introduction of local converters. It is now possible to customize the conversion between R/rpy2 objects and other Python ob

[Rpy] rpy2-2.6.3

Hi, Rpy2-2.6.3, a bugfix release in the 2.6.x series was (quietly) pushed to pypi few days ago. It is just fixing one simple bug (see below). Release 2.7.0 with its interface to R's dplyr is expected to be the next release. Stay tuned. L. Release 2.6.3 = Bug fixed - - Me

[Rpy] rpy2-2.6.2 released

Hi, This is a bugfix release, mainly to address the fact that rpy2 is no longer compatible with R < 3.2 (now there is an informative error message at build time). rpy2-2.6.2 is on pypi. Best, Laurent -- ___

[Rpy] rpy2-2.6.1 released

rpy2-2.6.1, a bugfix release in the 2.6.x series, is now on pypi. -- Don't Limit Your Business. Reach for the Cloud. GigeNET's Cloud Solutions provide you with the tools and support that you need to offload your IT needs an

[Rpy] Docker to improve the experience of Windows users ?

Hi, I just opened a entry to discuss/evaluate whether Docker (boot2docker) could help improve the experience for Windows users: https://bitbucket.org/rpy2/rpy2/issue/284/docker-instead-of-windows-support Best, Laurent

Re: [Rpy] Rpy2 can't find my R libraries on install

Being answered on SO. On Jun 19, 2015 5:27 PM, "Jeff Alstott" wrote: > Hi! I'm having trouble installing Rpy2. This question is also on > stackoverflow: > > > http://stackoverflow.com/questions/30921570/rpy2-cant-find-my-r-libraries-on-install?noredirect=1#comment49893728_30921570 > > R built fr

[Rpy] rpy2-2.6.0 released

Hi, rpy2-2.6.0 was released few days ago. It is on Pypy, and the changes are available here (along with the documentation): http://rpy.sourceforge.net/rpy2/doc-2.6/html/changes.html#release-2-6-0 There is also a docker container: https://registry.hub.docker.com/u/lgautier/docker-rpy2-release/ B

[Rpy] rpy2.-2.5.6 released

Release early, release often... The package is available on pypi. Release 2.5.6 = Bugs fixed -- - Detection of the R version during setup on Win8 (issues #255 and #258) - Segmentation fault when converting :mod:`pandas` :class:`Series` with elements of type object (issue

[Rpy] rpy2-2.5.5 released

Hi, A new point release in the 2.5.x series is available and on pypi. The most significant fix is a segfault that could occur when using annotation packages in the latest bioconductor release. The changelog is: Release 2.5.5 = Bugs fixed -- - Crash (segfault) when querying

[Rpy] rpy2 on bitbucket moved to its own organisation

Hi, The repository for rpy2 has moved from my account to an organization account. This will help centralize experiments and extension into one place. The new URL is: https://bitbucket.org/rpy2/ Best, Laurent -- Downlo

[Rpy] rpy2-2.5.4 is out and on pypi

This is a point bug fix release in the 2.5.x series. The fixes and changes are: Release 2.5.4 = Bugs fixed -- - Filter PNG files on size, preventing empty files causing trouble to be ipython notebook rendering of graphics later on (slight modification of the pull reque

Re: [Rpy] Errors in installing rpy2

Hi Xinxin, It might be better to follow up on the bitbucket issue page (https://bitbucket.org/lgautier/rpy2/issue/246/typeerror-nonetype-object-is-not-iterable) rather than on the list. The issue page can be associated easily with revisions in the code, and allow you to share the full logs fro

Re: [Rpy] Errors in installing rpy2

in > ri_ext = getRinterface_ext() > File "setup.py", line 203, in getRinterface_ext > warnigs.warn('No include specified') > NameError: global name 'warnigs' is not defined > > > Thanks, > Xinxin > > On Sat, Dec 13, 2014 at 1

Re: [Rpy] Errors in installing rpy2

st): > File "setup.py", line 280, in > ri_ext = getRinterface_ext() > File "setup.py", line 202, in getRinterface_ext > include_dirs.extend(args.I) > TypeError: 'NoneType' object is not iterable > > > Thanks a lot. > Xinxin >

Re: [Rpy] Errors in installing rpy2

; File "setup.py", line 134, in cmd_config > warnings.warning("R emitting a warning: %s" % output[0]) > AttributeError: 'module' object has no attribute 'warning' > > Thanks a lot. > Xinxin > > > On Sat, Dec 13, 2014 at 2:07 AM, Lau

[Rpy] rpy2-2.5.3 is released and on Pypi

This is an other small incremental bugfix release. Release 2.5.3 = Changes - `setup.py` has `install_requires` in addition to `requires` in the hope to fix the missing dependency with Python 2 (:mod:`singledispatch` is required but not installed). Bugs fixed - Extracting configur

Re: [Rpy] Errors in installing rpy2

Error: 'list' object has no attribute 'strip' > > - > > I made a guess that the offending line should be output[0].strip() but > then I got the following error: > > -----------

Re: [Rpy] Errors in installing rpy2

This might be a genuine bug. I opened an issue: https://bitbucket.org/lgautier/rpy2/issue/247/error-when-getting-the-r-configuration-and 2014-12-12 7:21 GMT-05:00 Laurent Gautier : > > Hi, > > This might be a bug in the install script. Consider opening an issue on > bitbuc

Re: [Rpy] Errors in installing rpy2

Hi, This might be a bug in the install script. Consider opening an issue on bitbucket. Thanks, Laurent On Dec 12, 2014 3:57 AM, "Xinxin Peng" wrote: > Hi all, > > I have been trying to install rpy2-2.5.2 on a high performance computer > and run into the following errors: > > Traceback (most re

[Rpy] rpy2-2.5.2

Hi, rpy2-2.5.2 was just uploaded to Pypi. This is a small incremental bugfix release in the 2.5.x series. The changes are listed below: Release 2.5.2 = Bugs fixed -- - String representation of :class:`robjects.R` (issue #238) - Check during `build_ext` if unsupported versi

Re: [Rpy] rpy2 installation error

Hi, what are the versions of Python and R on your system (and what is your OS) ? On Nov 18, 2014 3:37 PM, "Robert Nichols" wrote: > Hello, > I am just wondering why I am getting this error message when I try to > install rpy2. The code I am using is just *pip install rpy2*. I then get > this erro

[Rpy] rpy2-2.5.1 released

Hi, Rpy2-2.5.1 is released. This is a bugfix release the changes are: Release 2.5.1 = Bug fixed - - Require singledispatch if Python 3.3 (issue #232) - Fixed bug when R spits out a warning when asked configuration information (issue #233) - Restored printing of compilatio

[Rpy] rpy2-2.5.0

Hi, rpy2-2.5.0 has just been released. For download purposes, the source package is now on Pypi. If interested in its development, there is now a branch version_2.5.x, and the branch "default" is now for "2.6.0-dev". The changelogs are somewhat short (see below) but there was quite a bit happen

[Rpy] rpy2-2.4.4 is released

Hi, The bugfix release 2.4.4 is released and available on Pypi. The changes are: Bugs fixed -- - Use `input` rather than `raw_input` in the default console callback with Python 3 (fixes issue #222) - Issues with conversions, pandas, and rmagic (fixes issue #218 and more) Laurent

[Rpy] rpy2-2.4.3 is released

It is on Pypi and the changes are: Release 2.4.3 = Bugs fixed -- - `geom_raster` was missing from `rpy2.robjects.lib.ggplot2` (pull request #30) - Fixed issue with SVG rendering in ipython notebook (issue #217) - Regression with `rx2()` introduced with new conversion (iss

[Rpy] rpy2-2.4.2 is out

Hi, rpy2-2.4.2 is out and available on pypi. It fixes a regression that appeared in some situations when the `pandas` conversion was active. Laurent -- HPCC Systems Open Source Big Data Platform from LexisNexis Risk Sol

[Rpy] rpy2-2.4.1 is out

Hi, The first bugfix in the 2.4 series is now available on Pypi. If fixes a printing issue in the ipython notebook. Best, Laurent -- Learn Graph Databases - Download FREE O'Reilly Book "Graph Databases" is the definiti

[Rpy] rpy2-2.4.0 is released

Hi, rpy2-2.4.0 is now on Pypi: pip install rpy2 --upgrade The list of user-visible changes is rather short, but a lot was done behind the scene to improve rpy2. http://rpy.sourceforge.net/rpy2/doc-2.4/html/changes.html#release-2-4-0 Thanks to Dav Clark, Thomas Kluyver, and Pablo Oliveira for mi

Re: [Rpy] Py3 build failure

Thanks for the report (I have not yet tried with Python 3.4). If the compilation breaks without that CFLAG, may be it should be part of default. Feel free to open an issue. I won't touch things until more people experience an issue. L. On 02/27/2014 11:29 AM, Luca Beltrame wrote: In data g

Re: [Rpy] import rpy2.robjects results in "Symbol not found: _R_BaseEnv" (OS X 10.6.8)

On 02/18/2014 08:37 PM, Nik Krumm wrote: > Hi all, > > After attempting to upgrade R, I now for the life of me cannot get rpy2 to > interface. Installation of R and rpy2 do proceed (though some warnings on > compile there, see below), but then this happens when importing `robjects`: > > 05:19:2

[Rpy] rpy2-2.3.9 is released

Hi, rpy2-2.3.9 is released and is available on Pypi. This is a bugfix release to address changes in pandas 0.13.0. Thanks to the pandas folks (y-p, jtratner) for the contributed fix. L. -- CenturyLink Cloud: The Leader

Re: [Rpy] FORTRAN problem while Installing rpy2 for python Enthought (Canopy)

Hi, The issue is presumably on Enthought's side. Rpy2 is linking to R, which itself can link to the system's BLAS (not mandatory, R can also compile its own BLAS). L. On Jan 13, 2014 12:42 AM, "Kayhan Batmanghelich" wrote: > Dear All, > > I have some difficulties installing rpy2 for python Enth

Re: [Rpy] load nnet in rpy2

0-dev, the conversion can be made automagic: from rpy2.robjects import pandas2ri pandas2ri.activate() # from now on, a pandas DataFrame passed to an R function will be converted on-the-fly -Alessandro From: Laurent Gautier mailto:lgaut...@gmail.com>> Date: Monday, December

Re: [Rpy] load nnet in rpy2

Ah, yes. Good you did. The licensing had all the attention. The following is completely untested, but should get you going (and with some luck, just work as it is) from rpy2.robjects.packages import importr base = importr('base') nnet = importr('nnet') # load: the side effect is to populate th

Re: [Rpy] License Requirements (Was: Is the AGP still making sense ?)

On 11/30/2013 04:33 PM, Thomas Kluyver wrote: On 30 November 2013 13:11, Laurent Gautier <mailto:lgaut...@gmail.com>> wrote: Yet, I am not convinced that a BSD-type license is appropriate here. The liberal licensing types can easily use the project in isolation, either

Re: [Rpy] (New) License for rpy2

Thanks for checking that the list of contributors to contact is correct: https://bitbucket.org/lgautier/rpy2/issue/171/license-is-the-agpl-making-sense Best, Laurent On 11/29/2013 04:43 PM, Laurent Gautier wrote: Hi, Thanks to all for the participation, opinions, and recommendations

Re: [Rpy] License Requirements (Was: Is the AGP still making sense ?)

On 11/29/2013 06:53 PM, Alan G Isaac wrote: > On 11/29/2013 5:41 PM, Nathaniel Smith wrote: >> you seem to be flailing around, hoping that maybe >> there will be some loophole that means the law will work out to be the >> way you want? > Absolutely not. For one thing, I do not "want" one outcome >

Re: [Rpy] License Requirements (Was: Is the AGP still making sense ?)

On 11/29/2013 05:12 PM, Alan G Isaac wrote: >> On Wed, Nov 27, 2013 at 2:14 PM, Alan G Isaac wrote: >>> http://www.law.washington.edu/lta/swp/law/derivative.html > On 11/28/2013 5:58 PM, Nathaniel Smith wrote: >> There's no meaningful legal distinction between static and dynamic >> linking. And pre

[Rpy] (New) License for rpy2

Hi, Thanks to all for the participation, opinions, and recommendations. While there are diverging opinions about what the license should/could be, the consensus appears to be that the AGPL is not the most appropriate. I am taking note and I'll work on having it taken off the next rpy2 release

Re: [Rpy] Is the AGP still making sense ?

On 11/26/2013 06:42 PM, Alex Mandel wrote: > On 11/26/2013 02:13 PM, Laurent Gautier wrote: >> Hi, >> >> With rpy2-2.4.0 getting closer, I am wondering about it: >> https://bitbucket.org/lgautier/rpy2/issue/171/license-is-the-agpl-making-sense >> >> >

[Rpy] Is the AGP still making sense ?

Hi, With rpy2-2.4.0 getting closer, I am wondering about it: https://bitbucket.org/lgautier/rpy2/issue/171/license-is-the-agpl-making-sense L. -- Rapidly troubleshoot problems before they affect your business. Most IT

Re: [Rpy] RPy2 license clarification

On 11/22/2013 07:30 PM, Mark Huberty wrote: Hi, I wanted to clarify what license RPy2 is provided under. The pypi page (https://pypi.python.org/pypi/rpy2/) suggests that it is the MPL, but the footer on that page cites the AGPL. The Sourceforge page suggests that MPL / GPL v2.0 are the releva

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