aroma-affymetrix
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[aroma.affymetrix] Re: function: indexOf()
Mark Robinson
[aroma.affymetrix] Re: function: indexOf()
Jun
[aroma.affymetrix] Re: function: indexOf()
Henrik Bengtsson
[aroma.affymetrix] how to continue an interrupted job?
wukong
[aroma.affymetrix] Re: how to continue an interrupted job?
Henrik Bengtsson
[aroma.affymetrix] Re: how to continue an interrupted job?
wukong
[aroma.affymetrix] Re: Using GenomeGraphs with FIRMA (Was: FIRMA score)
Mark Robinson
[aroma.affymetrix] limma analysis of firma scores
Frank
[aroma.affymetrix] Re: limma analysis of firma scores
Mark Robinson
[aroma.affymetrix] Using GenomeGraphs with FIRMA (Was: FIRMA score)
Mark Robinson
[aroma.affymetrix] Re: Using GenomeGraphs with FIRMA (Was: FIRMA score)
Mark Robinson
[aroma.affymetrix] Re: Using GenomeGraphs with FIRMA (Was: FIRMA score)
Frank
[aroma.affymetrix] Re: Using GenomeGraphs with FIRMA (Was: FIRMA score)
Frank
[aroma.affymetrix] Re: Using GenomeGraphs with FIRMA (Was: FIRMA score)
Frank
[aroma.affymetrix] Discussion on raex-1-0-st-v1
Mathieu
[aroma.affymetrix] Re: Discussion on raex-1-0-st-v1
Mark Robinson
[aroma.affymetrix] Discussion on raex-1-0-st-v1
Mathieu
[aroma.affymetrix] CRMAv2 questions
Jin Peng
[aroma.affymetrix] Broken link to Mapping50K_Xba240,na26,HB20080916.ufl
cstratowa
[aroma.affymetrix] Re: Broken link to Mapping50K_Xba240,na26,HB20080916.ufl
Henrik Bengtsson
[aroma.affymetrix] Re: Broken link to Mapping50K_Xba240,na26,HB20080916.ufl
cstratowa
[aroma.affymetrix] Re: Tumor Normal contamination
Anguraj Sadanandam
[aroma.affymetrix] ragene10st analysis taking 10 times longer than hugene10st
Sebastien Gerega
[aroma.affymetrix] Re: ragene10st analysis taking 10 times longer than hugene10st
Mark Robinson
[aroma.affymetrix] Re: ragene10st analysis taking 10 times longer than hugene10st
Sebastien Gerega
[aroma.affymetrix] Re: ragene10st analysis taking 10 times longer than hugene10st
Sebastien Gerega
[aroma.affymetrix] Re: ragene10st analysis taking 10 times longer than hugene10st
Mark Robinson
[aroma.affymetrix] Re: ragene10st analysis taking 10 times longer than hugene10st
Sebastien Gerega
[aroma.affymetrix] Re: ragene10st analysis taking 10 times longer than hugene10st
Mark Robinson
[aroma.affymetrix] Re: ragene10st analysis taking 10 times longer than hugene10st
Sebastien Gerega
[aroma.affymetrix] Re: ragene10st analysis taking 10 times longer than hugene10st
Sebastien Gerega
[aroma.affymetrix] selection of "good" probes in exon CDF's
Angel
[aroma.affymetrix] Re: selection of "good" probes in exon CDF's
David Rosenberg
[aroma.affymetrix] Re: selection of "good" probes in exon CDF's
Angel
[aroma.affymetrix] Re: selection of "good" probes in exon CDF's
Mark Robinson
[aroma.affymetrix] Re: selection of "good" probes in exon CDF's
Yu Chuan
Re: [aroma.affymetrix] Re: selection of "good" probes in exon CDF's
Mark Robinson
[aroma.affymetrix] Unanswered messages
Henrik Bengtsson
[aroma.affymetrix] Error during FragmentLengthNormalization (fln)
David Rosenberg
[aroma.affymetrix] to use an array list file
wukong
[aroma.affymetrix] Re: to use an array list file
Pierre Neuvial
[aroma.affymetrix] to use array list file
Wukong Sun
[aroma.affymetrix] Re: to use array list file
Mark Robinson
[aroma.affymetrix] Re: to use array list file
Henrik Bengtsson
[aroma.affymetrix] Is there a function of average distance of probe intensity to the estimated copy number.
Yue Hu
[aroma.affymetrix] convert fit() results in xdr file to text format
qichengm
[aroma.affymetrix] data structures for segment data recorded in xdr files
qichengm
[aroma.affymetrix] exporting CN ratios for Affy500K w/o extractRawCopyNumbers
Armand
[aroma.affymetrix] problem with GenomeWideSNP_5 ugp and ufl
Mow
[aroma.affymetrix] Re: problem with GenomeWideSNP_5 ugp and ufl
Henrik Bengtsson
Re: Reference for allele crosstalk calibration method? (Was: Re: [aroma.affymetrix] Re: Error in ACC using custom cdf)
Henrik Bengtsson
Re: Question on affxparser writeCdfxxxxx() and Fusion SDK? (Was: Re: [aroma.affymetrix] Re: Error in ACC using custom cdf)
Henrik Bengtsson
[aroma.affymetrix] warnings when reading binary CEL files
Jason Li
[aroma.affymetrix] Re: warnings when reading binary CEL files
Jason Li
[aroma.affymetrix] Re: warnings when reading binary CEL files
Henrik Bengtsson
[aroma.affymetrix] Re: warnings when reading binary CEL files
Henrik Bengtsson
[aroma.affymetrix] Re: warnings when reading binary CEL files
Jason Li
[aroma.affymetrix] probes missing from mogene10st.db
Sebastien Gerega
[aroma.affymetrix] Re: probes missing from mogene10st.db
Mark Robinson
[aroma.affymetrix] GenomeWideSNP_6 problem : cannot load ugp file
Armand Valsesia
[aroma.affymetrix] Re: GenomeWideSNP_6 problem : cannot load ugp file
Henrik Bengtsson
[aroma.affymetrix] Re: GenomeWideSNP_6 problem : cannot load ugp file
Armand Valsesia
[aroma.affymetrix] annotation of ST gene Arrays
simonb
[aroma.affymetrix] Re: annotation of ST gene Arrays
Mark Robinson
[aroma.affymetrix] Re: annotation of ST gene Arrays
Mark Robinson
Ensembl-centric CDFs from scratch (Was: Re: [aroma.affymetrix] Error: cannot allocate vector of size 692.8 Mb)
Mark Robinson
[aroma.affymetrix] changing colours in plotRle
Sebastien Gerega
[aroma.affymetrix] Re: changing colours in plotRle
Mark Robinson
[aroma.affymetrix] Re: changing colours in plotRle
Sebastien Gerega
[aroma.affymetrix] Re: changing colours in plotRle
Mark Robinson
[aroma.affymetrix] Re: changing colours in plotRle
Sebastien Gerega
[aroma.affymetrix] Re: changing colours in plotRle
Mark Robinson
[aroma.affymetrix] Installing on R 2.8.1
michal.blazejczyk
[aroma.affymetrix] Re: Installing on R 2.8.1
Henrik Bengtsson
[aroma.affymetrix] LOH / UPD analysis
mbaudis
[aroma.affymetrix] Re: LOH / UPD analysis
Henrik Bengtsson
[aroma.affymetrix] Re: LOH / UPD analysis
Pierre Neuvial
[aroma.affymetrix] Re: LOH / UPD analysis
mbaudis
[aroma.affymetrix] Re: LOH / UPD analysis
Pierre Neuvial
[aroma.affymetrix] Error in ACC using custom cdf
David Rosenberg
[aroma.affymetrix] Re: Error in ACC using custom cdf
Henrik Bengtsson
[aroma.affymetrix] Re: Error in ACC using custom cdf
David Rosenberg
[aroma.affymetrix] Re: Error in ACC using custom cdf
David Rosenberg
[aroma.affymetrix] Re: Error in ACC using custom cdf
David Rosenberg
[aroma.affymetrix] Re: Error in ACC using custom cdf
Henrik Bengtsson
[aroma.affymetrix] Re: Error in ACC using custom cdf
David Rosenberg
[aroma.affymetrix] Re: Error in ACC using custom cdf
Henrik Bengtsson
[aroma.affymetrix] Re: Error in ACC using custom cdf
David Rosenberg
[aroma.affymetrix] Re: Error in ACC using custom cdf
David Rosenberg
[aroma.affymetrix] Chromosome explorer - zooms 64 + 128.
Lavinia Gordon
[aroma.affymetrix] Re: Chromosome explorer - zooms 64 + 128.
Henrik Bengtsson
[aroma.affymetrix] Re: Chromosome explorer - zooms 64 + 128.
Lavinia Gordon
[aroma.affymetrix] Re: Chromosome explorer - zooms 64 + 128.
Lavinia Gordon
[aroma.affymetrix] Re: Chromosome explorer - zooms 64 + 128.
Mark Robinson
[aroma.affymetrix] Re: Chromosome explorer - zooms 64 + 128.
mbaudis
[aroma.affymetrix] Error: cannot allocate vector of size 692.8 Mb
sabrina
[aroma.affymetrix] Re: Error: cannot allocate vector of size 692.8 Mb
Mark Robinson
[aroma.affymetrix] Re: Error: cannot allocate vector of size 692.8 Mb
sabrina
[aroma.affymetrix] Re: Error: cannot allocate vector of size 692.8 Mb
Mark Robinson
[aroma.affymetrix] Re: Error: cannot allocate vector of size 692.8 Mb
Henrik Bengtsson
[aroma.affymetrix] Re: Error: cannot allocate vector of size 692.8 Mb
sabrina
[aroma.affymetrix] use a few normal samples as the reference set
Qicheng Ma
[aroma.affymetrix] Re: use a few normal samples as the reference set
Pierre Neuvial
[aroma.affymetrix] Re: use a few normal samples as the reference set
qichengm
[aroma.affymetrix] Re: use a few normal samples as the reference set
Henrik Bengtsson
[aroma.affymetrix] unequal number of test and normal samples
qichengm
[aroma.affymetrix] Re: unequal number of test and normal samples
Henrik Bengtsson
[aroma.affymetrix] Crash in using RmaCnPlm with combineAlleles = FALSE
Mike B
[aroma.affymetrix] Re: Crash in using RmaCnPlm with combineAlleles = FALSE
Pierre Neuvial
[aroma.affymetrix] Re: Crash in using RmaCnPlm with combineAlleles = FALSE
Henrik Bengtsson
[aroma.affymetrix] Re: Crash in using RmaCnPlm with combineAlleles = FALSE
Mike B
[aroma.affymetrix] Experimental Design
sc@rcega
[aroma.affymetrix] Re: Experimental Design
Pierre Neuvial
[aroma.affymetrix] Can't read the CDF file
anbarasu
[aroma.affymetrix] Re: Can't read the CDF file
anbarasu
[aroma.affymetrix] Re: Can't read the CDF file
Mark Robinson
[aroma.affymetrix] Re: Can't read the CDF file
anbarasu
[aroma.affymetrix] exon array with technical replicates
sabrina
[aroma.affymetrix] Re: exon array with technical replicates
Mark Robinson
[aroma.affymetrix] Re: exon array with technical replicates
sabrina
[aroma.affymetrix] Re: exon array with technical replicates
Mark Robinson
[aroma.affymetrix] Re: exon array with technical replicates
sabrina
[aroma.affymetrix] Re: exon array with technical replicates
Mark Robinson
[aroma.affymetrix] Re: exon array with technical replicates
sabrina
[aroma.affymetrix] Re: exon array with technical replicates
Mark Robinson
[aroma.affymetrix] File tags for AllelicCrosstalkCalibration in aroma.affymetrix V1.0.0
Harry
[aroma.affymetrix] Re: File tags for AllelicCrosstalkCalibration in aroma.affymetrix V1.0.0
Harry
[aroma.affymetrix] Wrong layout in plotAllelePairs
Pierre Neuvial
[aroma.affymetrix] Re: Wrong layout in plotAllelePairs
Pierre Neuvial
[aroma.affymetrix] Total Copy Number Analysis - Hardware requirements
connys
[aroma.affymetrix] Re: Total Copy Number Analysis - Hardware requirements
Henrik Bengtsson
[aroma.affymetrix] aroma.affymetrix v1.0.0 and 3 years anniversary
Henrik Bengtsson
[aroma.affymetrix] AllelicCrosstalkCalibration(..., model=CRMAv2, B=3)
Pierre Neuvial
[aroma.affymetrix] Re: AllelicCrosstalkCalibration(..., model=CRMAv2, B=3)
Henrik Bengtsson
[aroma.affymetrix] Re: AllelicCrosstalkCalibration(..., model=CRMAv2, B=3)
Pierre Neuvial
[aroma.affymetrix] ufl and ugp files for na27?
cstratowa
[aroma.affymetrix] Re: ufl and ugp files for na27?
cstratowa
[aroma.affymetrix] Re: ufl and ugp files for na27?
Henrik Bengtsson
[aroma.affymetrix] Re: ufl and ugp files for na27?
cstratowa
[aroma.affymetrix] Error in fragment length normalization
Mike B
[aroma.affymetrix] Re: Error in fragment length normalization
Pierre Neuvial
[aroma.affymetrix] Re: Error in fragment length normalization
Mike B
[aroma.affymetrix] Ploidy number
tarang.kh...@googlemail.com
[aroma.affymetrix] Re: Ploidy number
Henrik Bengtsson
Re: Maximum length of pathname in Windows and workaround (Was: Re: [aroma.affymetrix] Re: error in createCel)
Henrik Bengtsson
Re: Problems installing EBImage on OSX (Was: Re: [aroma.affymetrix] Installation errors under R 2.8 / Mac OS X)
Henrik Bengtsson
[aroma.affymetrix] About queries for the CRMA v2 paper
Henrik Bengtsson
[aroma.affymetrix] tumor samples cases
ronmaster
[aroma.affymetrix] Re: tumor samples cases
Henrik Bengtsson
[aroma.affymetrix] Pre-release version of aroma.affymetrix v2
Harry
[aroma.affymetrix] SNP 6.0 processing
angu
[aroma.affymetrix] Re: SNP 6.0 processing
Mark Robinson
[aroma.affymetrix] Re: SNP 6.0 processing
angu
[aroma.affymetrix] Re: SNP 6.0 processing
Henrik Bengtsson
[aroma.affymetrix] Re: SNP 6.0 processing
angu
[aroma.affymetrix] Re: SNP 6.0 processing
Henrik Bengtsson
[aroma.affymetrix] GLAD configuration
sc@rcega
[aroma.affymetrix] Re: GLAD configuration
Henrik Bengtsson
[aroma.affymetrix] Batch Effects
srgrey...@gmail.com
[aroma.affymetrix] Re: Batch Effects
Mark Robinson
[aroma.affymetrix] Re: Batch Effects
srgrey...@gmail.com
Universal binaries of matrixStats v0.1.3 for OSX, please (Was: Re: [aroma.affymetrix] Installation errors under R 2.8 / Mac OS X)
Henrik Bengtsson
Re: Universal binaries of matrixStats v0.1.3 for OSX, please (Was: Re: [aroma.affymetrix] Installation errors under R 2.8 / Mac OS X)
Lynn Amon
Re: Universal binaries of matrixStats v0.1.3 for OSX, please (Was: Re: [aroma.affymetrix] Installation errors under R 2.8 / Mac OS X)
Mark Robinson
Re: Universal binaries of matrixStats v0.1.3 for OSX, please (Was: Re: [aroma.affymetrix] Installation errors under R 2.8 / Mac OS X)
Henrik Bengtsson
Re: Universal binaries of matrixStats v0.1.3 for OSX, please (Was: Re: [aroma.affymetrix] Installation errors under R 2.8 / Mac OS X)
Lynn Amon
Re: Universal binaries of matrixStats v0.1.3 for OSX, please (Was: Re: [aroma.affymetrix] Installation errors under R 2.8 / Mac OS X)
Henrik Bengtsson
Re: Universal binaries of matrixStats v0.1.3 for OSX, please (Was: Re: [aroma.affymetrix] Installation errors under R 2.8 / Mac OS X)
Lynn Amon
Re: Universal binaries of matrixStats v0.1.3 for OSX, please (Was: Re: [aroma.affymetrix] Installation errors under R 2.8 / Mac OS X)
Henrik Bengtsson
[aroma.affymetrix] sequence content
Christina
[aroma.affymetrix] Re: sequence content
Henrik Bengtsson
[aroma.affymetrix] error in createCel
Elizabeth Purdom
[aroma.affymetrix] Re: error in createCel
Henrik Bengtsson
[aroma.affymetrix] Re: error in createCel
Elizabeth Purdom
[aroma.affymetrix] Re: error in createCel
Henrik Bengtsson
[aroma.affymetrix] Affymetrix SNP IDs
Mike B
[aroma.affymetrix] Re: Affymetrix SNP IDs
Henrik Bengtsson
[aroma.affymetrix] Installation errors under R 2.8 / Mac OS X
mbaudis
[aroma.affymetrix] Installation errors under R 2.8 / Mac OS X: EBImage
mbaudis
[aroma.affymetrix] Vignette: Estimation of total copy numbers using the CRMA v2 method (10K-6.0)
Henrik Bengtsson
[aroma.affymetrix] Re: Vignette: Estimation of total copy numbers using the CRMA v2 method (10K-6.0)
Roger
[aroma.affymetrix] specify test set and reference set
Qicheng Ma
[aroma.affymetrix] Re: specify test set and reference set
Henrik Bengtsson
[aroma.affymetrix] Interpretation problem
sc@rcega
[aroma.affymetrix] Re: Interpretation problem
Henrik Bengtsson
[aroma.affymetrix] aroma.affymetrix v0.9.6 released
Henrik Bengtsson
[aroma.affymetrix] non-paired comparison with a reference file.
ronmaster
[aroma.affymetrix] Re: non-paired comparison with a reference file.
Henrik Bengtsson
[aroma.affymetrix] Re: non-paired comparison with a reference file.
ronmaster
[aroma.affymetrix] Pango-Warning means "out of memory"?
Benjamin
[aroma.affymetrix] Pango-Warning means "out of memory"?
Benjamin
[aroma.affymetrix] Re: Pango-Warning means "out of memory"?
Henrik Bengtsson
[aroma.affymetrix] How to reload CBS/GLAD segmentation result files (.xdr) and generate output by ChromosomeExplorer
Harry
[aroma.affymetrix] Re: How to reload CBS/GLAD segmentation result files (.xdr) and generate output by ChromosomeExplorer
Henrik Bengtsson
[aroma.affymetrix] extractRawCopyNumbers question
Qicheng Ma
[aroma.affymetrix] Re: extractRawCopyNumbers question
Henrik Bengtsson
[aroma.affymetrix] Re: extractRawCopyNumbers question
Qicheng Ma
[aroma.affymetrix] Re: extractRawCopyNumbers question
Henrik Bengtsson
[aroma.affymetrix] Estimated time left: 36844.5min
Nicolas Stransky
[aroma.affymetrix] Re: Estimated time left: 36844.5min
Henrik Bengtsson
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