Re: [Fink-users] Trying to install root5 (root-5.34.36-3)

[Remi Mommsen]

Hi,

> On 30 May 2017, at 4:25 PM, tarcisio.delpr...@pi.infn.it wrote:
> 
> Dear sirs,
> While installing the file root, I got the following errors, whose list I 
> append to the mail.
> I did the fink selfupdate as recommended with no success. I also reconfigured 
> fink for a single process, no success.
> The latest version of root is 6.09, any hope to have this installed with fink?
> Thanks for any help,
> Nino Del Prete.


I fear chances are slim to get the old root5 fixed for Mac OS 10.12, or that I 
find time to package root6 for fink. I would recommend to install root6 
directly from root.cern.ch.

Cheers,
Remi




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Re: [Fink-users] Compile error on package xrootd4 (dependancy for root5-cernlib)

[Remi Mommsen]

Hi,

> On 03 Jan 2017, at 6:08 AM, Daniel Macks  wrote:
> 
> On Mon, 2 Jan 2017 18:00:20 +, "Attanayake, Harsha"  wrote:
>> [ 46%] Linking CXX shared library libXrdCryptossl.dylib
>> Undefined symbols for architecture x86_64:
>>  "_X509_NAME_hash_old", referenced from:
>>  XrdCryptosslX509::IssuerHash(int) in XrdCryptosslX509.cc.o
>>  XrdCryptosslX509::SubjectHash(int) in XrdCryptosslX509.cc.o
>>  XrdCryptosslX509Crl::IssuerHash(int) in XrdCryptosslX509Crl.cc.o
>>  XrdCryptosslX509Req::SubjectHash(int) in XrdCryptosslX509Req.cc.o
>> ld: symbol(s) not found for architecture x86_64
>> clang: error: linker command failed with exit code 1 (use -v to see 
>> invocation)
>> make[2]: *** [src/libXrdCryptossl.2.0.0.dylib] Error 1
>> make[1]: *** [src/CMakeFiles/XrdCryptossl.dir/all] Error 2
>> make: *** [all] Error 2
> [...]
>> Failed: phase compiling: xrootd4-4.0.3-12 failed
> 
> Same for me on 10.11 just now, but it had previously built successfully here. 
> The now-failure is a result of some security changes in openssl. Upstream 
> version 4.5.0 includes the following likely fix for it:
> 
> https://github.com/xrootd/xrootd/commit/728ee39efde40ed9a7c9230a2808d6111fae10ad
> 
> dan

I updated xrootd to version 4.5.0. This version builds for me on 10.11.

Cheers,
Remi




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[Fink-users] wireshark-2.0.0-1 fails to build on 10.11

[Remi Mommsen]

Hi Max,

I try to build the latest wireshark 2.0.0-1 on 10.11. However, the 
configuration fails with:
checking for GLIB - version >= 2.16.0... no
*** Could not run GLIB test program, checking why...
*** The test program failed to compile or link. See the file config.log for the
*** exact error that occured. This usually means GLIB is incorrectly installed.
configure: error: GLib 2.16.0 or later distribution not found.

Looking into config.log, it turns out that it does not find libintl when trying 
to build the test executable. Installing libgettext8-dev solves the problem. I 
guess you should add it to the b'depends.

Cheers,
Remi



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Re: [Fink-users] osxfusefs problem

[Remi Mommsen]

Hi Giuliano,

> On 03 Nov 2015, at 12:09 AM, Giuliano Franchetti  wrote:
> 
> The system.log says
> 
> 
> Nov  3 00:06:55 fairnbg21 com.apple.xpc.launchd[1] (org.postfix.master): 
> Service only ran for 1 seconds. Pushing respawn out by 9 seconds.
> Nov  3 00:07:06 fairnbg21 com.apple.xpc.launchd[1] 
> (org.postfix.master[31106]): Service exited with abnormal code: 1
> Nov  3 00:07:06 fairnbg21 com.apple.xpc.launchd[1] (org.postfix.master): 
> Service only ran for 1 seconds. Pushing respawn out by 9 seconds.
> Nov  3 00:07:09 fairnbg21 com.apple.kextd[54]: Untrusted kexts are not allowed
> Nov  3 00:07:09 fairnbg21 com.apple.kextd[54]: ERROR: invalid signature for 
> com.github.osxfuse.filesystems.osxfusefs, will not load
> Nov  3 00:07:13 fairnbg21 com.apple.kextd[54]: Untrusted kexts are not allowed
> Nov  3 00:07:13 fairnbg21 com.apple.kextd[54]: ERROR: invalid signature for 
> com.github.osxfuse.filesystems.osxfusefs, will not load
> Nov  3 00:07:16 fairnbg21 com.apple.xpc.launchd[1] 
> (org.postfix.master[31117]): Service exited with abnormal code: 1
> Nov  3 00:07:16 fairnbg21 com.apple.xpc.launchd[1] (org.postfix.master): 
> Service only ran for 1 seconds. Pushing respawn out by 9 seconds.
> 
> something seems wrong with kexts and signature for 
> com.github.osxfuse.filesystems.osxfusefs

I have the same problem after updating to 10.11. I removed the fink version and 
switched to the version available from http://osxfuse.github.com/, which works 
flawlessly.

Cheers,
Remi



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Re: [Fink-users] root5 update failure

[Remi Mommsen]

Hi,


> On 19 Oct 2015, at 6:45 PM, Luigi Ernesto Zanotti <luigi.zano...@mib.infn.it> 
> wrote:
> 
> On 19-10-2015 6:22 p.m., Remi Mommsen wrote:
>> Hi,
>> 
>> sorry for the late reply. I was traveling and didn’t have access to a 
>> machine with 10.11.
>> 
>> 
>> 
>>> On 18 Oct 2015, at 12:24 PM, Luigi Ernesto Zanotti 
>>> <luigi.zano...@mib.infn.it>
>>>  wrote:
>>> 
>>> On 14-10-2015 6:55 p.m., Alexander Hansen wrote:
>>> 
>>>>> On Oct 14, 2015, at 09:18, Luigi Ernesto Zanotti 
>>>>> <luigi.zano...@mib.infn.it>
>>>>>  wrote:
>>>>> 
>>>>> Updating root5 I get the following error message. Have you any suggestion?
>>>>> Thanks in advance. Yours,
>>>>> Luigi Zanotti
>>>>> 
>>>>> /bin/mv /sw/src/fink.build/root-root5-5.34.32-2/sw/lib/root/libEG.5.dylib 
>>>>> /sw/src/fink.build/root-root5-shlibs-5.34.32-2/sw/lib/root/
>>>>> /bin/mv 
>>>>> /sw/src/fink.build/root-root5-5.34.32-2/sw/lib/root/libEve.5.34.dylib 
>>>>> /sw/src/fink.build/root-root5-shlibs-5.34.32-2/sw/lib/root/
>>>>> mv: rename 
>>>>> /sw/src/fink.build/root-root5-5.34.32-2/sw/lib/root/libEve.5.34.dylib to 
>>>>> /sw/src/fink.build/root-root5-shlibs-5.34.32-2/sw/lib/root/libEve.5.34.dylib:
>>>>>  No such file or directory
>>>>> ### execution of /bin/mv failed, exit code 1
>>>>> ### execution of /tmp/fink.nY1ZA failed, exit code 1
>>>>> Removing runtime build-lock...
>>>>> Removing build-lock package...
>>>>> /sw/bin/dpkg-lockwait -r fink-buildlock-root5-5.34.32-2
>>>>> (Reading database ... 217259 files and directories currently installed.)
>>>>> Removing fink-buildlock-root5-5.34.32-2 ...
>>>>> Failed: phase installing: root5-shlibs-5.34.32-2 failed
>>>>> 
>>>>> Before reporting any errors, please run "fink selfupdate" and try again.
>>>>> 
>>>>> If you continue to have issues, please check to see if the FAQ on Fink's 
>>>>> website solves the problem.  If not, ask on one (not both, please) of
>>>>> these mailing lists:
>>>>> 
>>>>> The Fink Users List 
>>>>> <fink-users@lists.sourceforge.net>
>>>>> 
>>>>> The Fink Beginners List 
>>>>> <fink-beginn...@lists.sourceforge.net>
>>>>> ,
>>>>> 
>>>>> with a carbon copy to the maintainer:
>>>>> 
>>>>> Remi Mommsen 
>>>>> <remigius.momm...@cern.ch>
>>>>> 
>>>>> 
>>>>> Note that this is preferable to emailing just the maintainer directly,
>>>>> since most fink package maintainers do not have access to all possible
>>>>> hardware and software configurations.
>>>>> 
>>>>> Please try to include the complete error message in your report.  This
>>>>> generally consists of a compiler line starting with e.g. "gcc" or "g++"
>>>>> followed by the actual error output from the compiler.
>>>>> 
>>>>> Also include the following system information:
>>>>> Package manager version: 0.39.1
>>>>> Distribution version: selfupdate-cvs Wed Oct 14 17:38:43 2015, 10.11, 
>>>>> x86_64
>>>>> Trees: local/main stable/main stable/crypto local/injected
>>>>> Xcode.app: 7.0.1
>>>>> Xcode command-line tools: 7.0.0.0.1.1441394355
>>>>> Max. Fink build jobs:  1
>>>>>  
>>>>> -- 
>>>>> 
>>>>> Prof. Luigi Ernesto Zanotti
>>>>> 
>>>>> Physics Department "G. Occhialini"
>>>>> University of Milano Bicocca
>>>>> 
>>>>> Piazza della Scienza 3. 20126 Milano Italy
>>>>> Tel. +39 02 6448 2413
>>>>> E-Mail: 
>>>>> 
>>>>> luigi.zano...@mib.infn.it
>>>>> 
>>>>> ———
>>>>> ___
>>>>> 
>>>> The actual error is that libEve.5.34.dylib didn’t get generated.  However, 
>>>> you are going to need to look earlier in your build output for another 
>>>> error message to see what happened, because there’s no information at this 
>>>> point about what caused   that—“execution of mv failed” is a symptom.
>>>> 
>>>> -- 
>>>> Alexander Hansen, Ph.D.
>>>> Fink User Liaison
>>>> 
>>>> 
>>> Sorry for the delay answering. I had a look to the build log file, but 
>>> didn't find anything really anomalous, at least for me, apart the following:
>>> 
>> root is looking in the xcode SDK for opengl which is needed for libEve. 
>> However, opengl is no longer found in the 10.11 SDK. Unfortunately, root 
>> does not bail out at the point, but just continues the build without it.
>> 
>> Anyway, I’m working on a new version of root5 which will also solve the 
>> missing openssl on 10.11. Stay tuned.
>> 
>> Cheers,
>> Remi
>> 
>> 
>> 
> Thanks a lot. I'll stay tuned!

I committed the new ROOT package and fixes to dependent packages. It builds for 
me on 10.11. Can you please give it a try?

Thanks,
Remi




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Re: [Fink-users] root5 update failure

[Remi Mommsen]

Hi,

sorry for the late reply. I was traveling and didn’t have access to a machine 
with 10.11.


> On 18 Oct 2015, at 12:24 PM, Luigi Ernesto Zanotti 
> <luigi.zano...@mib.infn.it> wrote:
> 
> On 14-10-2015 6:55 p.m., Alexander Hansen wrote:
>> 
>>> On Oct 14, 2015, at 09:18, Luigi Ernesto Zanotti 
>>> <luigi.zano...@mib.infn.it> wrote:
>>> 
>>> Updating root5 I get the following error message. Have you any suggestion?
>>> Thanks in advance. Yours,
>>> Luigi Zanotti
>>> 
>>> /bin/mv /sw/src/fink.build/root-root5-5.34.32-2/sw/lib/root/libEG.5.dylib 
>>> /sw/src/fink.build/root-root5-shlibs-5.34.32-2/sw/lib/root/
>>> /bin/mv 
>>> /sw/src/fink.build/root-root5-5.34.32-2/sw/lib/root/libEve.5.34.dylib 
>>> /sw/src/fink.build/root-root5-shlibs-5.34.32-2/sw/lib/root/
>>> mv: rename 
>>> /sw/src/fink.build/root-root5-5.34.32-2/sw/lib/root/libEve.5.34.dylib to 
>>> /sw/src/fink.build/root-root5-shlibs-5.34.32-2/sw/lib/root/libEve.5.34.dylib:
>>>  No such file or directory
>>> ### execution of /bin/mv failed, exit code 1
>>> ### execution of /tmp/fink.nY1ZA failed, exit code 1
>>> Removing runtime build-lock...
>>> Removing build-lock package...
>>> /sw/bin/dpkg-lockwait -r fink-buildlock-root5-5.34.32-2
>>> (Reading database ... 217259 files and directories currently installed.)
>>> Removing fink-buildlock-root5-5.34.32-2 ...
>>> Failed: phase installing: root5-shlibs-5.34.32-2 failed
>>> 
>>> Before reporting any errors, please run "fink selfupdate" and try again.
>>> 
>>> If you continue to have issues, please check to see if the FAQ on Fink's 
>>> website solves the problem.  If not, ask on one (not both, please) of
>>> these mailing lists:
>>> 
>>> The Fink Users List <fink-users@lists.sourceforge.net>
>>> The Fink Beginners List <fink-beginn...@lists.sourceforge.net>,
>>> 
>>> with a carbon copy to the maintainer:
>>> 
>>> Remi Mommsen <remigius.momm...@cern.ch>
>>> 
>>> Note that this is preferable to emailing just the maintainer directly,
>>> since most fink package maintainers do not have access to all possible
>>> hardware and software configurations.
>>> 
>>> Please try to include the complete error message in your report.  This
>>> generally consists of a compiler line starting with e.g. "gcc" or "g++"
>>> followed by the actual error output from the compiler.
>>> 
>>> Also include the following system information:
>>> Package manager version: 0.39.1
>>> Distribution version: selfupdate-cvs Wed Oct 14 17:38:43 2015, 10.11, x86_64
>>> Trees: local/main stable/main stable/crypto local/injected
>>> Xcode.app: 7.0.1
>>> Xcode command-line tools: 7.0.0.0.1.1441394355
>>> Max. Fink build jobs:  1
>>>  
>>> -- 
>>> 
>>> Prof. Luigi Ernesto Zanotti
>>> 
>>> Physics Department "G. Occhialini"
>>> University of Milano Bicocca
>>> 
>>> Piazza della Scienza 3. 20126 Milano Italy
>>> Tel. +39 02 6448 2413
>>> E-Mail: 
>>> luigi.zano...@mib.infn.it
>>> ———
>>> ___
>> 
>> The actual error is that libEve.5.34.dylib didn’t get generated.  However, 
>> you are going to need to look earlier in your build output for another error 
>> message to see what happened, because there’s no information at this point 
>> about what caused   that—“execution of mv failed” is a symptom.
>> 
>> -- 
>> Alexander Hansen, Ph.D.
>> Fink User Liaison
>> 
> Sorry for the delay answering. I had a look to the build log file, but didn't 
> find anything really anomalous, at least for me, apart the following:

root is looking in the xcode SDK for opengl which is needed for libEve. 
However, opengl is no longer found in the 10.11 SDK. Unfortunately, root does 
not bail out at the point, but just continues the build without it.

Anyway, I’m working on a new version of root5 which will also solve the missing 
openssl on 10.11. Stay tuned.

Cheers,
Remi




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[Fink-users] llvm-gcc42 buid failure

[Remi Mommsen]

Hi,

while building xmkmf which is needed by the cernlib package, lvm-gcc42 fails to 
build (on 10.9 with a non-standard fink prefix '/opt/fink'):

# hardcode install name for libllvmgcc.dylib
install_name_tool -id 
/opt/fink/lib/llvm-gcc42/gcc/x86_64-apple-darwin13/4.2.1/libllvmgcc.dylib 
/opt/fink/src/fink.build/root-llvm-gcc42-2336.11-7/opt/fink/lib/llvm-gcc42/gcc/x86_64-apple-darwin13/4.2.1/libllvmgcc.dylib
error: 
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/install_name_tool:
 changing install names or rpaths can't be redone for: 
/opt/fink/src/fink.build/root-llvm-gcc42-2336.11-7/opt/fink/lib/llvm-gcc42/gcc/x86_64-apple-darwin13/4.2.1/libllvmgcc.dylib
 (for architecture x86_64) because larger updated load commands do not fit (the 
program must be relinked, and you may need to use -headerpad or 
-headerpad_max_install_names)
### execution of /tmp/fink.FkQu8 failed, exit code 1
### execution of /tmp/fink.zb8F6 failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/opt/fink/bin/dpkg-lockwait -r fink-buildlock-llvm-gcc42-2336.11-7
(Reading database ... 64327 files and directories currently installed.)
Removing fink-buildlock-llvm-gcc42-2336.11-7 ...
Failed: phase installing: llvm-gcc42-2336.11-7 failed


Also include the following system information:
Package manager version: 0.38.4
Distribution version: selfupdate-cvs Mon May 11 13:10:05 2015, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 6.2
Xcode command-line tools: 6.2.0.0.1.1424975374
llvm-gcc42-2336.11-7 is set to build with only one job.


Cheers,
Remi

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Re: [Fink-users] llvm-gcc42 buid failure

[Remi Mommsen]

Hi Jack,

thanks for the quick fix. The version in CVS works fine for me.

Remi

On 11 May 2015, at 07:09 pm, Jack Howarth howarth.at.f...@gmail.com wrote:

 Remi,
 Looks like it needs to be...
 
 perl -pi -e 's|-install_name|-Wl,-headerpad_max_install_names
 -install_name|g' %b/gcc/Makefile.in
 
   Jack
 
 On Mon, May 11, 2015 at 12:37 PM, Jack Howarth
 howarth.at.f...@gmail.com wrote:
 Remi,
 The install path name length is being exceeded in your case. Try 
 adding
 
 perl -pi -e 's|-install_name|-headerpad_max_install_names
 -install_name|g' %b/gcc/Makefile.in
 
 to the end of the PatchScript in llvm-gcc42-10.9.info in your case
 (which should work around your long path).
   Jack
 
 On Mon, May 11, 2015 at 11:50 AM, Remi Mommsen remigius.momm...@cern.ch 
 wrote:
 Hi,
 
 while building xmkmf which is needed by the cernlib package, lvm-gcc42 
 fails to build (on 10.9 with a non-standard fink prefix '/opt/fink'):
 
# hardcode install name for libllvmgcc.dylib
install_name_tool -id 
 /opt/fink/lib/llvm-gcc42/gcc/x86_64-apple-darwin13/4.2.1/libllvmgcc.dylib 
 /opt/fink/src/fink.build/root-llvm-gcc42-2336.11-7/opt/fink/lib/llvm-gcc42/gcc/x86_64-apple-darwin13/4.2.1/libllvmgcc.dylib
 error: 
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/install_name_tool:
  changing install names or rpaths can't be redone for: 
 /opt/fink/src/fink.build/root-llvm-gcc42-2336.11-7/opt/fink/lib/llvm-gcc42/gcc/x86_64-apple-darwin13/4.2.1/libllvmgcc.dylib
  (for architecture x86_64) because larger updated load commands do not fit 
 (the program must be relinked, and you may need to use -headerpad or 
 -headerpad_max_install_names)
 ### execution of /tmp/fink.FkQu8 failed, exit code 1
 ### execution of /tmp/fink.zb8F6 failed, exit code 1
 Removing runtime build-lock...
 Removing build-lock package...
 /opt/fink/bin/dpkg-lockwait -r fink-buildlock-llvm-gcc42-2336.11-7
 (Reading database ... 64327 files and directories currently installed.)
 Removing fink-buildlock-llvm-gcc42-2336.11-7 ...
 Failed: phase installing: llvm-gcc42-2336.11-7 failed
 
 
 Also include the following system information:
 Package manager version: 0.38.4
 Distribution version: selfupdate-cvs Mon May 11 13:10:05 2015, 10.9, x86_64
 Trees: local/main stable/main
 Xcode.app: 6.2
 Xcode command-line tools: 6.2.0.0.1.1424975374
 llvm-gcc42-2336.11-7 is set to build with only one job.
 
 
 Cheers,
 Remi



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Re: [Fink-users] gcc49-4.9.0-1000 fails to build

[Remi Mommsen]

Hi Jack,

On 30 Apr 2014, at 18:42, Jack Howarth howarth.at.f...@gmail.com wrote:

 Remi,
  Please check that you get..
 
 grep GMP_CFLAGS gmp.h
 #define __GMP_CFLAGS -O2 -pedantic -fomit-frame-pointer -m64 -mtune=core2 
 -march=core2
 
 in your fink includes directory. The new gmp 6.0.0 release has a total 
 rewrite of the assembly optimizations…
 
 https://gmplib.org/gmp6.0.html
 
 and the config.guess will produce a unique machine type for newer hardware. 
 This could cause issues if
 the assembly for newer cpus is run on an older hardware.
 Jack
 

Checking gmp was the right clue:

$ grep GMP_CFLAGS /opt/fink/include/gmp.h
#define __GMP_CFLAGS -O2 -pedantic -fomit-frame-pointer -m64 -mtune=corei7 
-march=corei7

$ pkg -S /opt/fink/include/gmp.h
gmp5: /opt/fink/include/gmp.h

$ fink list gmp5
Information about 8231 packages read in 1 seconds.
 i   gmp5 6.0.0a-1 GNU multiple 
precision arithmetic library
 i   gmp5-shlibs  6.0.0a-1 Shared library 
for gmp package

$ fink rebuild gmp5

$ grep GMP_CFLAGS /opt/fink/include/gmp.h
#define __GMP_CFLAGS -O2 -pedantic -fomit-frame-pointer -m64 -mtune=core2 
-march=core2

$ fink build gcc49

which succeeds.


I restored my old laptop from a Time Machine backup from my newer (but broken) 
MacBook Pro. Thus, I got the wrong GMP_CFLAGS for a newer CPU architecture. I 
guess this could also affect people getting gmp5 from the binary distribution. 

Anyway, thanks for your help sorting it out.

Cheers,
Remi




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Re: [Fink-users] gcc49-4.9.0-1000 fails to build

[Remi Mommsen]

Hi Jack,

On 29 Apr 2014, at 16:31, Jack Howarth howarth.at.f...@gmail.com wrote:
Hi Jack,

it looks all fine to me:

$ which gcc
/usr/bin/gcc
$ gcc -v
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr 
--with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
Target: x86_64-apple-darwin13.1.0
Thread model: posix
$ which g++
/usr/bin/g++
$ g++ --version
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr 
--with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
Target: x86_64-apple-darwin13.1.0
Thread model: posix


The same when running within the gcc49 fink package:

+ which gcc
/opt/fink/var/lib/fink/path-prefix-clang/gcc
 gcc -v
+ gcc -v
Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
Target: x86_64-apple-darwin13.1.0
Thread model: posix
clang: warning: argument unused during compilation: 
'-Wno-error=unused-command-line-argument-hard-error-in-future'
 which g++
+ which g++
/opt/fink/var/lib/fink/path-prefix-libcxx/g++
 g++ -v
+ g++ -v
Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
Target: x86_64-apple-darwin13.1.0
Thread model: posix

Remi


 Remi,
The only instance of this sort of failure is from MacPorts last year…
 
 http://trac.macports.org/ticket/41917
 
 The problem apparently wasn't considered critical by the MacPorts developers. 
 I believe this was because the user was using the ancient /usr/bin/gcc-4.2 
 compiler. The fink packaging has been tested on both darwin12 and darwin13 
 using Xcode 5.1.1 without issue as well as darwin11 with Xcode 4.6. I would 
 make sure that you have a stock installation of the devtools without any 
 customized symlinks or legacy binaries from previous Xcode releases left 
 behind. You might try executing the system compilers by hand with -v to 
 confirm that those in /usr/bin are really from Xcode 5.1.1. The Mavericks 
 release introduced compiler stubs into /usr/bin which automate the 
 installation of Xcode and the command line tools. If the upgrade to Mavericks 
 went wrong and those stubs are not installed, the legacy compilers might be 
 used rather than those from Xcode 5.1.1. Note that the Command Line Tools 
 don't install directly into /usr/bin in Mavericks so that if the compiler 
 stubs don't replace the legacy compiler binaries in /usr/bin during the 
 installation of Mavericks, the mechanism for finding the proper compilers is 
 defeated.
Jack 
 ps If you find that the legacy compilers haven't been replaced by the 
 compiler stubs in /usr/bin, a reinstallation of the latest Mavericks from 
 Apple followed by reinstalling the command line tools with 'xcode-select 
 --install' should solve the problem.
 
 
 On Tue, Apr 29, 2014 at 9:15 AM, Remi Mommsen remigius.momm...@cern.ch 
 wrote:
 Hi Jack,
 
 I'm trying to build gcc49-4.9.0-1000 on a rather old MacBook Pro (15-inch 
 Early 2008) with Mac OS 10.9.2. However, the build fails reproducible:
 
 /opt/fink/src/fink.build/gcc49-4.9.0-1000/darwin_objdir/./gcc/xgcc 
 -B/opt/fink/src/fink.build/gcc49-4.9.0-1000/darwin_objdir/./gcc/ 
 -B/opt/fink/lib/gcc4.9/x86_64-apple-darwin13.1.0/bin/ 
 -B/opt/fink/lib/gcc4.9/x86_64-apple-darwin13.1.0/lib/ -isystem 
 /opt/fink/lib/gcc4.9/x86_64-apple-darwin13.1.0/include -isystem 
 /opt/fink/lib/gcc4.9/x86_64-apple-darwin13.1.0/sys-include-g -O2 -m32 
 -O2  -g -O2 -DIN_GCC-W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual 
 -Wno-format -Wstrict-prototypes -Wmissing-prototypes -Wold-style-definition  
 -isystem ./include   -pipe -fno-common -g -DIN_LIBGCC2 -fbuilding-libgcc 
 -fno-stack-protector   -pipe -fno-common -I. -I. -I../../.././gcc 
 -I../../../../gcc-4.9.0/libgcc -I../../../../gcc-4.9.0/libgcc/. 
 -I../../../../gcc-4.9.0/libgcc/../gcc 
 -I../../../../gcc-4.9.0/libgcc/../include  -DHAVE_CC_TLS -DUSE_EMUTLS -o 
 _mulxc3.o -MT _mulxc3.o -MD -MP -MF _mulxc3.dep -DL_mulxc3 -c 
 ../../../../gcc-4.9.0/libgcc/libgcc2.c -fvisibility=hidden -DHIDE_EXPORTS
 ../../../../gcc-4.9.0/libgcc/libgcc2.c: In function '__mulxc3':
 ../../../../gcc-4.9.0/libgcc/libgcc2.c:1964:6: internal compiler error: 
 Illegal instruction: 4
 a = COPYSIGN (isinf (a) ? 1 : 0, a);
   ^
 libbacktrace could not find executable to open
 Please submit a full bug report,
 with preprocessed source if appropriate.
 See http://gcc.gnu.org/bugs.html for instructions.
 
 Package manager version: 0.36.4.1
 Distribution version: selfupdate-cvs Tue Apr 29 11:13:50 2014, 10.9, x86_64
 Trees: local/main stable/main
 Xcode.app: 5.1.1
 Xcode command-line tools: 5.1.0.0.1.1396320587
 Max. Fink build jobs:  2
 
 
 I also tried the build with only one build job, but no avail.
 
 Any ideas?
 
 Remi
 
 


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[Fink-users] gcc49-4.9.0-1000 fails to build

[Remi Mommsen]

Hi Jack,

I'm trying to build gcc49-4.9.0-1000 on a rather old MacBook Pro (15-inch Early 
2008) with Mac OS 10.9.2. However, the build fails reproducible:

/opt/fink/src/fink.build/gcc49-4.9.0-1000/darwin_objdir/./gcc/xgcc 
-B/opt/fink/src/fink.build/gcc49-4.9.0-1000/darwin_objdir/./gcc/ 
-B/opt/fink/lib/gcc4.9/x86_64-apple-darwin13.1.0/bin/ 
-B/opt/fink/lib/gcc4.9/x86_64-apple-darwin13.1.0/lib/ -isystem 
/opt/fink/lib/gcc4.9/x86_64-apple-darwin13.1.0/include -isystem 
/opt/fink/lib/gcc4.9/x86_64-apple-darwin13.1.0/sys-include-g -O2 -m32 -O2  
-g -O2 -DIN_GCC-W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual 
-Wno-format -Wstrict-prototypes -Wmissing-prototypes -Wold-style-definition  
-isystem ./include   -pipe -fno-common -g -DIN_LIBGCC2 -fbuilding-libgcc 
-fno-stack-protector   -pipe -fno-common -I. -I. -I../../.././gcc 
-I../../../../gcc-4.9.0/libgcc -I../../../../gcc-4.9.0/libgcc/. 
-I../../../../gcc-4.9.0/libgcc/../gcc -I../../../../gcc-4.9.0/libgcc/../include 
 -DHAVE_CC_TLS -DUSE_EMUTLS -o _mulxc3.o -MT _mulxc3.o -MD -MP -MF _mulxc3.dep 
-DL_mulxc3 -c ../../../../gcc-4.9.0/libgcc/libgcc2.c -fvisibility=hidden 
-DHIDE_EXPORTS
../../../../gcc-4.9.0/libgcc/libgcc2.c: In function '__mulxc3':
../../../../gcc-4.9.0/libgcc/libgcc2.c:1964:6: internal compiler error: Illegal 
instruction: 4
a = COPYSIGN (isinf (a) ? 1 : 0, a);
  ^
libbacktrace could not find executable to open
Please submit a full bug report,
with preprocessed source if appropriate.
See http://gcc.gnu.org/bugs.html for instructions.

Package manager version: 0.36.4.1
Distribution version: selfupdate-cvs Tue Apr 29 11:13:50 2014, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.1.1
Xcode command-line tools: 5.1.0.0.1.1396320587
Max. Fink build jobs:  2


I also tried the build with only one build job, but no avail.

Any ideas?

Remi

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Re: [Fink-users] Errorneus output for file

[Remi Mommsen]

Hi,

On 18 Apr 2014, at 15:05, Stefan Bruda ste...@bruda.ca wrote:

 At 11:03 +0200 on 2014-4-18 Martin Costabel wrote:
 
 On 18/04/14 05:43, Stefan Bruda wrote:
 Hello,
 
 I just discovered that Fink's file behaves strangely on my system (Mac
 OS 10.9, Xcode 5.1.1, command-line tools 5.1.0.0.1.1396320587,
 distribution rsync-ed today from ber.de.eu.finkmirrors.net/finkinfo/):
 
  godel:main/finkinfo  file libsidplay.info
 libsidplay.info: ERROR: line 163: regex error 17, (illegal byte sequence)
 
 I also get this error if I set LANG=en_US, but not if I unset it or set 
 it to LANG=C or even LANG=en.
 
 Interesting.  It did not cross my mind to change LANG to use file...
 
 This seems to be fixed in the latest version file-5.18 which is not yet 
 in Fink, but is easy to get, just changing the version number and the 
 source MD5sum.
 
 Version 5.18 seems to work fine.  Many thanks!
 
 Best regards,
 Stefan

Thanks for reporting the issue and providing the fix. I committed now 5.18 to 
fink.

Cheers,
Remi




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Re: [Fink-users] libaprutil.0-shlibs-1.5.3-1 fails to build on 10.8.5

[Remi Mommsen]

Hi Daniel,

On Dec 2, 2013, at 2:56 PM, Daniel Johnson daniel.johnso...@gmail.com wrote:

 
 On Dec 2, 2013, at 7:17 AM, Remi Mommsen remigius.momm...@cern.ch wrote:
 
 Hi Daniel,
 
 On Nov 29, 2013, at 7:12 PM, Daniel Johnson dan...@daniel-johnson.org 
 wrote:
 
 
 On Nov 29, 2013, at 12:19 PM, Remi Mommsen remigius.momm...@cern.ch 
 wrote:
 
 Hi,
 
 I try to build libaprutil.0-shlibs-1.5.3-1. But it fails with:
 
 /bin/sh /opt/fink/share/apr/build/libtool --silent --mode=compile gcc -g 
 -O2   -DHAVE_CONFIG_H  -DDARWIN -DSIGPROCMASK_SETS_THREAD_MASK -DDARWIN_10 
   
 -I/opt/fink/src/fink.build/libaprutil.0-shlibs-1.5.3-1/apr-util-1.5.3/include
  
 -I/opt/fink/src/fink.build/libaprutil.0-shlibs-1.5.3-1/apr-util-1.5.3/include/private
   -I/opt/fink/include/apr  -I/opt/fink/include  -o ldap/apr_ldap_rebind.lo 
 -c ldap/apr_ldap_rebind.c  touch ldap/apr_ldap_rebind.lo
 clang: warning: argument unused during compilation: '-I 
 /opt/fink/src/fink.build/libaprutil.0-shlibs-1.5.3-1/apr-util-1.5.3/include'
 clang: warning: argument unused during compilation: '-I 
 /opt/fink/src/fink.build/libaprutil.0-shlibs-1.5.3-1/apr-util-1.5.3/include/private'
 clang: warning: argument unused during compilation: '-I 
 /opt/fink/include/apr'
 clang: warning: argument unused during compilation: '-I /opt/fink/include'
 ldap/apr_ldap_rebind.c:330:45: error: too few arguments to function call, 
 expected 3, have 2
 ldap_set_rebind_proc(ld, LDAP_rebindproc);
 ^
 /opt/fink/include/ldap.h:974:1: note: 'ldap_set_rebind_proc' declared here
 extern int
 ^
 1 error generated.
 make[1]: *** [ldap/apr_ldap_rebind.lo] Error 1
 make: *** [all-recursive] Error 1
 ### execution of make failed, exit code 2
 ### execution of /tmp/fink.ZDYMZ failed, exit code 2
 Removing runtime build-lock...
 Removing build-lock package...
 /opt/fink/bin/dpkg-lockwait -r fink-buildlock-libaprutil.0-shlibs-1.5.3-1
 (Reading database ... 142757 files and directories currently installed.)
 Removing fink-buildlock-libaprutil.0-shlibs-1.5.3-1 ...
 Failed: phase compiling: libaprutil.0-shlibs-1.5.3-1 failed
 
 Also include the following system information:
 Package manager version: 0.36.1
 Distribution version: selfupdate-cvs Fri Nov 29 18:05:23 2013, 10.8, x86_64
 Trees: local/main stable/main local/injected
 Xcode.app: 5.0.2
 Xcode command-line tools: 5.0.1.0.1.1377666378
 libaprutil.0-shlibs-1.5.3-1 is set to build with only one job.
 
 
 /opt/fink/include/ldap.h is installed by openldap24-dev 2.4.35-1.
 
 Any ideas?
 
 Thanks,
 Remi
 
 Those clang: warning: argument unused during compilation warnings are 
 suspicious. Somehow a space is being inserted after the -I options which 
 causes them to be ignored. Do you have ccache-default installed? Something 
 is intercepting the gcc call. Maybe a BuildConflicts is in order or there's 
 something wrong with ccache-default.
 
 Daniel
 
 
 I don't have ccache-default installed. The spaces after -I are harmless. 
 Note that it finds /opt/fink/include/ldap.h.
 
 Remi
 
 
 No, it isn't harmless. clang: warning: argument unused during compilation: 
 '-I /opt/fink/include/apr' indicates that clang is seeing the -I and 
 /opt/fink/include/apr as two separate options and therefore ignoring them 
 since they aren't valid on their own. This is causing clang to not find 
 fink's apr headers and use the system's instead. The question is where are 
 the spaces after the -Is coming from?
 
 It seems that libtool is mangling what it sends to the compiler. I've seen 
 something like this before but can't remember what was the cause. Does anyone 
 recognize this?
 
 Maybe try rebuilding libapr.0 since that's where libtool is coming from? 
 Maybe you had something installed when you built apr that isn't installed 
 now? Perhaps Gnu sed? I have a vague recollection of sed causing libtool 
 issues before.

All this did not help. However, I tracked it to the following issue:

configure at line 11523 checks if ldap_set_rebind_proc takes 2 or 3 arguments. 
However, the CFLAGS are extended on line 11530 to mark all warnings as errors. 
This causes the clang: warning: argument unused during compilation which also 
happens here to be promoted to an error, which in turn causes the compile to 
fail on line 15551. Thus, the 'ac_cv_ldap_set_rebind_proc_style' gets set to 
two instead of three. Calling clang with '-Qunused-arguments' quiets the 
warning about unused arguments. I.e. the following change to 
libaprutil.0-shlibs.info solves the issue for me:

diff -u -r1.7 libaprutil.0-shlibs.info
--- libaprutil.0-shlibs.info27 Nov 2013 03:06:10 -  1.7
+++ libaprutil.0-shlibs.info5 Dec 2013 19:21:46 -
@@ -36,6 +36,7 @@
 PatchScript: 
   ### Fix layout
   perl -pi -e 's,/usr/local,%p,g' config.layout
+  perl -pi -e 's,-Werror,-Werror -Qunused-arguments,g' configure
   %{default_script}
 
 

The question of course remains why it only fails for me ):

Remi





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Re: [Fink-users] libaprutil.0-shlibs-1.5.3-1 fails to build on 10.8.5

[Remi Mommsen]

Hi Daniel,

On Nov 29, 2013, at 7:12 PM, Daniel Johnson dan...@daniel-johnson.org wrote:

 
 On Nov 29, 2013, at 12:19 PM, Remi Mommsen remigius.momm...@cern.ch wrote:
 
 Hi,
 
 I try to build libaprutil.0-shlibs-1.5.3-1. But it fails with:
 
 /bin/sh /opt/fink/share/apr/build/libtool --silent --mode=compile gcc -g -O2 
   -DHAVE_CONFIG_H  -DDARWIN -DSIGPROCMASK_SETS_THREAD_MASK -DDARWIN_10   
 -I/opt/fink/src/fink.build/libaprutil.0-shlibs-1.5.3-1/apr-util-1.5.3/include
  
 -I/opt/fink/src/fink.build/libaprutil.0-shlibs-1.5.3-1/apr-util-1.5.3/include/private
   -I/opt/fink/include/apr  -I/opt/fink/include  -o ldap/apr_ldap_rebind.lo 
 -c ldap/apr_ldap_rebind.c  touch ldap/apr_ldap_rebind.lo
 clang: warning: argument unused during compilation: '-I 
 /opt/fink/src/fink.build/libaprutil.0-shlibs-1.5.3-1/apr-util-1.5.3/include'
 clang: warning: argument unused during compilation: '-I 
 /opt/fink/src/fink.build/libaprutil.0-shlibs-1.5.3-1/apr-util-1.5.3/include/private'
 clang: warning: argument unused during compilation: '-I 
 /opt/fink/include/apr'
 clang: warning: argument unused during compilation: '-I /opt/fink/include'
 ldap/apr_ldap_rebind.c:330:45: error: too few arguments to function call, 
 expected 3, have 2
   ldap_set_rebind_proc(ld, LDAP_rebindproc);
   ^
 /opt/fink/include/ldap.h:974:1: note: 'ldap_set_rebind_proc' declared here
 extern int
 ^
 1 error generated.
 make[1]: *** [ldap/apr_ldap_rebind.lo] Error 1
 make: *** [all-recursive] Error 1
 ### execution of make failed, exit code 2
 ### execution of /tmp/fink.ZDYMZ failed, exit code 2
 Removing runtime build-lock...
 Removing build-lock package...
 /opt/fink/bin/dpkg-lockwait -r fink-buildlock-libaprutil.0-shlibs-1.5.3-1
 (Reading database ... 142757 files and directories currently installed.)
 Removing fink-buildlock-libaprutil.0-shlibs-1.5.3-1 ...
 Failed: phase compiling: libaprutil.0-shlibs-1.5.3-1 failed
 
 Also include the following system information:
 Package manager version: 0.36.1
 Distribution version: selfupdate-cvs Fri Nov 29 18:05:23 2013, 10.8, x86_64
 Trees: local/main stable/main local/injected
 Xcode.app: 5.0.2
 Xcode command-line tools: 5.0.1.0.1.1377666378
 libaprutil.0-shlibs-1.5.3-1 is set to build with only one job.
 
 
 /opt/fink/include/ldap.h is installed by openldap24-dev 2.4.35-1.
 
 Any ideas?
 
 Thanks,
 Remi
 
 
 
 
 Those clang: warning: argument unused during compilation warnings are 
 suspicious. Somehow a space is being inserted after the -I options which 
 causes them to be ignored. Do you have ccache-default installed? Something is 
 intercepting the gcc call. Maybe a BuildConflicts is in order or there's 
 something wrong with ccache-default.
 
 Daniel


I don't have ccache-default installed. The spaces after -I are harmless. Note 
that it finds /opt/fink/include/ldap.h.

Remi


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[Fink-users] libaprutil.0-shlibs-1.5.3-1 fails to build on 10.8.5

[Remi Mommsen]

Hi,

I try to build libaprutil.0-shlibs-1.5.3-1. But it fails with:

/bin/sh /opt/fink/share/apr/build/libtool --silent --mode=compile gcc -g -O2   
-DHAVE_CONFIG_H  -DDARWIN -DSIGPROCMASK_SETS_THREAD_MASK -DDARWIN_10   
-I/opt/fink/src/fink.build/libaprutil.0-shlibs-1.5.3-1/apr-util-1.5.3/include 
-I/opt/fink/src/fink.build/libaprutil.0-shlibs-1.5.3-1/apr-util-1.5.3/include/private
  -I/opt/fink/include/apr  -I/opt/fink/include  -o ldap/apr_ldap_rebind.lo -c 
ldap/apr_ldap_rebind.c  touch ldap/apr_ldap_rebind.lo
clang: warning: argument unused during compilation: '-I 
/opt/fink/src/fink.build/libaprutil.0-shlibs-1.5.3-1/apr-util-1.5.3/include'
clang: warning: argument unused during compilation: '-I 
/opt/fink/src/fink.build/libaprutil.0-shlibs-1.5.3-1/apr-util-1.5.3/include/private'
clang: warning: argument unused during compilation: '-I /opt/fink/include/apr'
clang: warning: argument unused during compilation: '-I /opt/fink/include'
ldap/apr_ldap_rebind.c:330:45: error: too few arguments to function call, 
expected 3, have 2
ldap_set_rebind_proc(ld, LDAP_rebindproc);
^
/opt/fink/include/ldap.h:974:1: note: 'ldap_set_rebind_proc' declared here
extern int
^
1 error generated.
make[1]: *** [ldap/apr_ldap_rebind.lo] Error 1
make: *** [all-recursive] Error 1
### execution of make failed, exit code 2
### execution of /tmp/fink.ZDYMZ failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/opt/fink/bin/dpkg-lockwait -r fink-buildlock-libaprutil.0-shlibs-1.5.3-1
(Reading database ... 142757 files and directories currently installed.)
Removing fink-buildlock-libaprutil.0-shlibs-1.5.3-1 ...
Failed: phase compiling: libaprutil.0-shlibs-1.5.3-1 failed

Also include the following system information:
Package manager version: 0.36.1
Distribution version: selfupdate-cvs Fri Nov 29 18:05:23 2013, 10.8, x86_64
Trees: local/main stable/main local/injected
Xcode.app: 5.0.2
Xcode command-line tools: 5.0.1.0.1.1377666378
libaprutil.0-shlibs-1.5.3-1 is set to build with only one job.


/opt/fink/include/ldap.h is installed by openldap24-dev 2.4.35-1.

Any ideas?

Thanks,
Remi





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Re: [Fink-users] Cernlib on Mavericks

[Remi Mommsen]

Hi Francesco,
 
On Nov 6, 2013, at 6:55 AM, Francesco Pietropaolo 
francesco.pietropa...@cern.ch wrote:

 Hi,
 I am trying to install the Cernlib2006 on Mavericks, but I keep getting the 
 following error while compiling:
 
 gfortran -c -O0 -g -funroll-loops -fomit-frame-pointer -ftree-vectorize 
 -fno-second-underscore -fno-automatic 
 -static-libgfortran -static-libgcc 
 -flat_namespace -undefined warning
 -I/sw/src/fink.build/cernlib2006-2006b-20/2006/src/packlib/kapack 
 -I/sw/src/fink.build/cernlib2006-2006b-20/2006/src/packlib/kapack 
 -I/sw/src/fink.build/cernlib2006-2006b-20/2006/src/packlib/kapack/code 
 -I/sw/src/fink.build/cernlib2006-2006b-20/2006/src/include  -DCERNLIB_LINUX 
 -DCERNLIB_UNIX -DCERNLIB_LNX   -DCERNLIB_QMLXIA64 -DCERNLIB_QMGLIBC 
 -DCERNLIB_MACOSX -DCERNLIB_GFORTRAN   -o archive/kaxrcl.o kaxrcl.F
 checking /packlib/kuip
 checking /packlib/kuip/code_kuip
 Makefile:459: archive/getline.d: No such file or directory
 Makefile:459: archive/kalias.d: No such file or directory
 Makefile:459: archive/kbrow.d: No such file or directory
 ..
 Makefile:459: archive/kxwriv.d: No such file or directory
 Makefile:459: archive/kxdsig.d: No such file or directory
 Makefile:459: archive/kuipcdf.d: No such file or directory
 kuipc kuipcdf.cdf kuipcdf.c
 make[3]: *** [kuipcdf.c] Abort trap: 6
 make[3]: *** Deleting file `kuipcdf.c'
 make[2]: *** [code_kuip/archive/objects.list] Error 2
 make[1]: *** [kuip/archive/objects.list] Error 2
 make: *** [install.lib] Error 2
 ### execution of /tmp/fink.74Tpa failed, exit code 2
 ### execution of /tmp/fink.8pCka failed, exit code 2
 Removing runtime build-lock...
 Removing build-lock package...
 /sw/bin/dpkg-lockwait -r fink-buildlock-cernlib2006-2006b-20
 Waiting up to 300 seconds for access to the dpkg database... done.
 (Reading database ... 62448 files and directories currently installed.)
 Removing fink-buildlock-cernlib2006-2006b-20 ...
 Failed: phase compiling: cernlib2006-2006b-20 failed
 
 Here are my system information:
 Package manager version: 0.36.0
 Distribution version: selfupdate-rsync Tue Nov  5 22:09:07 2013, 10.9, x86_64
 Trees: local/main stable/main
 Xcode.app: 5.0.1
 Xcode command-line tools: 5.0.1.0.1.1382131676
 cernlib2006-2006b-20 is set to build with only one job.

It seems to work on some machines and fail on others. I have no clue as to why, 
yet.

Remi



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Re: [Fink-users] root on 10.9 [was: 10.9 beta support]

[Remi Mommsen]

Hi Attila,

On Nov 1, 2013, at 11:03 AM, Attila Krasznahorkay 
attila.krasznahor...@cern.ch wrote:

 Hi Remi,
 
 Unfortunately things with ROOT are worse than this. :-(
 
 I very strongly propose that the Fink compilation of ROOT goes back to using 
 gcc48 for the compilation for now. GCCXML right now can't work with the Xcode 
 version of gcc at all. It still works fine with a hand-installed GCC version, 
 so the one installed by Fink will be fine. (As I think it already explicitly 
 uses the Fink-installed gcc48.) The problem is that the code that genreflex 
 produces using gccxml can't be compiled using the system-default clang 
 compiler. Because the generated code depends on too deep details of how STL 
 is implemented in GCC.
 
 So for now the only way I could successfully use Reflex dictionaries on 
 Mavericks was to compile both ROOT (the v5-34-00-patches branch) and GCCXML 
 against a hand-installed GCC 4.8, and compile all my ROOT code with that 
 compiler.
 
 The GCCXML maintainer will be back next week, I hope he'll be able to do 
 something about this issue. But it may not be a quick fix. Hence my proposal 
 to build ROOT using the Fink-installed GCC for now. (In which case v5-34-10 
 could be used already I think...)

This is clearly a problem with GCCXML on 10.9. In addition, using GCCXML with 
ROOT is not commonly done. Therefore, I don't see why I should force all users 
using ROOT from fink to use a not-supported configuration (10.[89] + gcc).

Remi



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Re: [Fink-users] 10.9 beta support

[Remi Mommsen]

Hi,

On Oct 29, 2013, at 2:25 PM, Hanspeter Niederstrasser f...@snaggledworks.com 
wrote:

 Please don't cross post to all 3 Fink lists.
 
 On 10/28/2013 11:26 AM, Luigi Ernesto Zanotti wrote:
 On 27/10/2013 20:46, Alexander Hansen wrote:
 4) We appreciate feedback about packages that aren't building, so that
 we can clean up the 10.9 distribution.
 
 
 Trying to build root5:
 
 Can't resolve dependency libpng15 for package root5-5.34.10-11 (no
 matching packages/versions
 
 A root5 update is under review by the Maintainer that should work on 10.9.  
 I've attached the possible update to this email.  You can save the files 
 /sw/fink/dists/local/main/finkinfo and try rebuilding root5 to see if it will 
 work on 10.9.

ROOT version 5.34.10 is known to _not_ work on 10.9. A new version 5.34.11 
addressing the issues should be released soon by the root team.

Remi




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Re: [Fink-users] Typo in root5's /sw/bin/genreflex file

[Remi Mommsen]

Hi,

sorry for not responding earlier. I've been busy with other stuff.

 On 8/8/2013 3:15 PM, Attila Krasznahorkay wrote:
 Dear All,
 
 With the webpage down (or I not knowing where it moved...) I'm not sure who 
 to send this to.
 
 I have ROOT installed using the root5 package. I recently discovered an 
 issue with it. The genreflex command from it doesn't work. :-( I expect 
 that nobody noticed it because it's not a too often used feature. (One needs 
 to install gccxml in addition to make any use of the genreflex script, and 
 unfortunately Fink doesn't provide gccxml. So I installed it under 
 /usr/local by hand.)
 
 So, the /sw/bin/genreflex script currently holds this content:
 
 #!/bin/bash
 if [ x${ROOTSYS} = x ]; then
 THIS=$(dirname $0)
 ROOTSYS=$(cd ${THIS}/..;pwd); export ROOTSYS
 fi
 python ${ROOTSYS}/lib/python/genreflex/genreflex.py $@
 
 But the last line should instead read:
 
 python ${ROOTSYS}/lib/root/python/genreflex/genreflex.py $@
 
 It's clearly just a typo, the script works fine after I make this fix by 
 hand. Could it be fixed in the Fink package?
 
 CC'ing Remi for the root5 fix.  I can try and package gccxml (it seems 
 fairly straightforward).

Thanks for reporting this problem. I committed a new revision 13 of the root5 
package which fixes the path to genreflex.py. BTW: I also removed the ROOTSYS, 
as in fink there should be no need to set it.

On Aug 13, 2013, at 12:52 AM, Hanspeter Niederstrasser f...@snaggledworks.com 
wrote:

 On 8/12/2013 5:42 PM, Attila Krasznahorkay wrote:
 Hi Hanspeter,
 
 Sorry for the delay...
 
 I tested the package description today. It did manage to compile and install 
 gccxml for me, and better yet, I managed to compile my code with it. (Which 
 also runs after this compilation.)
 
 I do get an annoying warning from the application, but it doesn't affect its 
 results:
 
 --- genreflex: WARNING: While trying to retrieve compiler version, found 
 unknown compiler /sw/bin/g++-fsf-4.8
 
 Don't know if that's a genreflex or gccxml bug.  It seems to be using 
 the file name to determine the compiler, but it should instead use some 
 other method ($COMPILER --version perhaps).  Either way, upstream should 
 probably fix how their detection works.

The problem is that the determination of the flag to retrieve the compiler 
version assumes that you call 'g++', i.e. it does not allow for anything 
appended to the compiler command. I fixed this, too.

 All in all, I very much vote for this package to be collected into the 
 repository. (With slightly more meaningful description strings. :-P)
 
 Oops.  Sorry about that.  That's what happens when I quickly copy and 
 paste from another package as a template.
 
 I've gone ahead and checked in gccxml into the CVS tree.  I changed the 
 way the versioning works, so the official Fink release shows a lower 
 version than the test file I sent you (although the actual gccxml 
 version is still the latest).  Please 'fink remove gccxml' to get rid of 
 the test version, delete the .info I emailed, and do a fink selfupdate. 
  This will fetch the new file which you can then build and install.

root5 now depends on gccxml.

Thanks Hanspeter and Attila for all the work (:

Cheers,
Remi



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Re: [Fink-users] pawX11 from cernlib problems on OSX 10.8.4

[Remi Mommsen]

Hi Gerd,

On Aug 13, 2013, at 10:53 PM, Gerd Puehlhofer 
gerd.puehlho...@astro.uni-tuebingen.de wrote:

 
 Dear Fink maintainers and users,
 
 I installed cernlib from Fink on my new OSX 10.8 MacBook Pro in order to 
 continue using pawX11. Installation of cernlib works, pawX11 starts up, 
 but trying some basics I receive the following error message:
 
 **
 **
 *W E L C O M Eto   P A W *
 **
 *   Version 2.14/04  12 January 2004 *
 **
 **
 Workstation type (?=HELP) CR=1 :
 Version 1.29/04 of HIGZ started
 
 PAW  fun1 100 x 10 0 1
 CSALLO: pointer difference too large to be represented by integer.
 You probably need to link PAW statically on 64-bit systems.
 
 Here are my system coordinates:
 
 MacBook Pro, OSX 10.8.4, all system updates installed
 X11: XQuartz 2.7.4
 XCode 4.6.3
 
 Fink:
  i   fink 0.35.1-71  Open-source software 
 package manager
  i   cernlib2006  2006b-19   Paw and other basic 
 executables
  i   gcc484.8.1-1000 GNU Compiler 
 Collection Version 4.8
  i   gcc48-compiler   4.8.1-1000 Compiler Binaries for 
 gcc48.
  i   gcc48-shlibs 4.8.1-1000 Shared libraries for gcc4
 
 After checking
 http://roaringcats.blogspot.de/2011/09/cernlib-finally-for-lion-from-fink.html
 http://fink.9193.n7.nabble.com/cernlib-and-fink-td16901.html
 I also tried 'gdb pawX11', which however didn't work because of missing 
 debug information in the (cernlib) libraries.
 
 As additional info, my OSX system is relatively fresh, with a standard 
 Fink installation (made today) in /sw/fink/, no own software 
 installation in /usr/local/. A test installation of 'nedit' from Fink 
 works nicely.
 
 Any help would be greatly appreciated. I have been successfully using 
 pawX11 from Fink on my old OSX 10.5 machine for years, and would be very 
 thankful if I would be able to get it running again on my new machine.
 
 Kind regards, Gerd Puehlhofer

Do you start paw or pawX11? The former wraps the call to pawX11 with 
disableASLR which disables the address space layout randomization (c.f. 
http://roaringcats.blogspot.ch/2011/09/disable-aslr-on-lion.html). This should 
solve the problem you're seeing.

HTH,
Remi



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Re: [Fink-users] ppl9-0.11.2-4 fails to compile

[Remi Mommsen]

Hi,

 On 16/07/13 00:24, Alexander Hansen wrote:
 On 7/15/13 3:17 PM, Martin Costabel wrote:
 On 15/07/13 18:13, Remi Mommsen wrote:
 Hi,
 
 I try to build gcc47, but fail to build ppl9-0.11.2-4. I don't see any 
 obvious problem:
 
 Making all in ppl_lpsol
 Making all in examples
 make[4]: Nothing to be done for `all'.
 gcc -DHAVE_CONFIG_H -I. -I../../../demos/ppl_lpsol -I../.. 
 -I../../interfaces/C 
 -I/System/Library/Frameworks/JavaVM.framework/Headers 
 -I/opt/fink/include  -Winvalid-pch -g -O2  -g -O2 -pipe 
 -fpch-preprocess -fPIC -W -Wall -MT glpk_set_d_eps.o -MD -MP -MF 
 .deps/glpk_set_d_eps.Tpo -c -o glpk_set_d_eps.o 
 ../../../demos/ppl_lpsol/glpk_set_d_eps.c
 clang: warning: argument unused during compilation: '-I .'
 
 Why is your gcc = clang? I have the same OS/xcode as you, but
 
 % ls -l /usr/bin/gcc
 lrwxr-xr-x  1 root  wheel  12 Apr 16 10:00 /usr/bin/gcc - llvm-gcc-4.2
 
 
 On 10.7 and later, the 'gcc' that fink normally builds with is
 /sw/var/lib/fink/path-prefix-clang/gcc, which wraps clang.  (cf. 'fink
 dumpinfo -ePATH ppl9')
 
 Yes, I saw this after sending my message. I was clutching at straws, trying 
 to find a compiler that would give this weird warning. I found it now, with 
 a 
 little help from google https://bugzilla.mozilla.org/show_bug.cgi?id=717713
 
 The culprit is ccache. With ccache-default installed, I get the same crash 
 as 
 Remi.
 
 It seems ppl9 needs a buildconflicts: ccache-default
 
 
 On Jul 16, 2013, at 1:21 AM, David Fang f...@csl.cornell.edu wrote:
 
 So which solution is preferred?
 CPPFLAGS with -Qunused-arguments
 or BConflict: ccache-default
 
 And should this be applied to 10.7+?
 
 Fang

Thanks for all the quick replies. I can confirm that both solutions solve the 
problem. I would prefer the CPPFLAGS approach as it does not interfere with 
other builds.

Cheers,
Remi



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[Fink-users] ppl9-0.11.2-4 fails to compile

[Remi Mommsen]

Hi,

I try to build gcc47, but fail to build ppl9-0.11.2-4. I don't see any obvious 
problem:

Making all in ppl_lpsol
Making all in examples
make[4]: Nothing to be done for `all'.
gcc -DHAVE_CONFIG_H -I. -I../../../demos/ppl_lpsol -I../..  
-I../../interfaces/C  -I/System/Library/Frameworks/JavaVM.framework/Headers 
-I/opt/fink/include  -Winvalid-pch -g -O2  -g -O2 -pipe -fpch-preprocess -fPIC 
-W -Wall -MT glpk_set_d_eps.o -MD -MP -MF .deps/glpk_set_d_eps.Tpo -c -o 
glpk_set_d_eps.o ../../../demos/ppl_lpsol/glpk_set_d_eps.c
clang: warning: argument unused during compilation: '-I .'
clang: warning: argument unused during compilation: '-I 
../../../demos/ppl_lpsol'
clang: warning: argument unused during compilation: '-I ../..'
clang: warning: argument unused during compilation: '-I ../../interfaces/C'
clang: warning: argument unused during compilation: '-I 
/System/Library/Frameworks/JavaVM.framework/Headers'
clang: warning: argument unused during compilation: '-I /opt/fink/include'
mv -f .deps/glpk_set_d_eps.Tpo .deps/glpk_set_d_eps.Po
rm -f libglpk_set_d_eps.a
ar cru libglpk_set_d_eps.a glpk_set_d_eps.o 
ranlib libglpk_set_d_eps.a
gcc -DHAVE_CONFIG_H -I. -I../../../demos/ppl_lpsol -I../..  
-I../../interfaces/C  -I/System/Library/Frameworks/JavaVM.framework/Headers 
-I/opt/fink/include -pedantic -std=gnu89 -Werror -Winvalid-pch -g -O2  -g -O2 
-pipe -fpch-preprocess -fPIC -W -Wall -MT ppl_lpsol-ppl_lpsol.o -MD -MP -MF 
.deps/ppl_lpsol-ppl_lpsol.Tpo -c -o ppl_lpsol-ppl_lpsol.o `test -f 
'ppl_lpsol.c' || echo '../../../demos/ppl_lpsol/'`ppl_lpsol.c
clang: error: argument unused during compilation: '-I .'
clang: error: argument unused during compilation: '-I ../../../demos/ppl_lpsol'
clang: error: argument unused during compilation: '-I ../..'
clang: error: argument unused during compilation: '-I ../../interfaces/C'
clang: error: argument unused during compilation: '-I 
/System/Library/Frameworks/JavaVM.framework/Headers'
clang: error: argument unused during compilation: '-I /opt/fink/include'
make[4]: *** [ppl_lpsol-ppl_lpsol.o] Error 1
make[3]: *** [all-recursive] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
### execution of /tmp/fink.KIbtF failed, exit code 2
### execution of /tmp/fink.txdbv failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/opt/fink/bin/dpkg-lockwait -r fink-buildlock-ppl9-0.11.2-4
(Reading database ... 175181 files and directories currently installed.)
Removing fink-buildlock-ppl9-0.11.2-4 ...
Failed: phase compiling: ppl9-0.11.2-4 failed

Before reporting any errors, please run fink selfupdate and try again.

If you continue to have issues, please check to see if the FAQ on Fink's 
website solves the problem.  If not, ask on one (not both, please) of
these mailing lists:

The Fink Users List fink-users@lists.sourceforge.net
The Fink Beginners List fink-beginn...@lists.sourceforge.net,

with a carbon copy to the maintainer:

David Fang fang...@users.sourceforge.net

Note that this is preferable to emailing just the maintainer directly,
since most fink package maintainers do not have access to all possible
hardware and software configurations.

Please try to include the complete error message in your report.  This
generally consists of a compiler line starting with e.g. gcc or g++
followed by the actual error output from the compiler.

Also include the following system information:
Package manager version: 0.35.1
Distribution version: selfupdate-cvs Mon Jul 15 11:55:25 2013, 10.8, x86_64
Trees: local/main stable/main local/injected
Xcode.app: 4.6.3
Xcode command-line tools: 4.6.0.0.1.1365549073
ppl9-0.11.2-4 is set to build with only one job.


Note: I switched UseMaxBuildJobs to false. It fails also with 4 parallel build 
jobs.


Any ideas?

Thanks,
Remi



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[Fink-users] io-socket-ssl-pm5124 fails to built with system extutils-makemaker-pm5124 on 10.8.3

[Remi Mommsen]

Hi,

using the system provided extutils-makemaker-pm5124 [1], the configuration of 
io-socket-ssl-pm5124 fails with:

sudo -u fink-bld [ENV] sh -c /tmp/fink.yCmh_
ARCHFLAGS= /usr/bin/arch -x86_64 perl5.12 Makefile.PL PERL=/usr/bin/arch 
-x86_64 perl5.12 PREFIX=/opt/fink INSTALLPRIVLIB=/opt/fink/lib/perl5/5.12.4 
INSTALLARCHLIB=/opt/fink/lib/perl5/5.12.4/darwin-thread-multi-2level 
INSTALLSITELIB=/opt/fink/lib/perl5/5.12.4 
INSTALLSITEARCH=/opt/fink/lib/perl5/5.12.4/darwin-thread-multi-2level 
INSTALLMAN1DIR=/opt/fink/share/man/man1 INSTALLMAN3DIR=/opt/fink/share/man/man3 
INSTALLSITEMAN1DIR=/opt/fink/share/man/man1 
INSTALLSITEMAN3DIR=/opt/fink/share/man/man3 INSTALLBIN=/opt/fink/bin 
INSTALLSITEBIN=/opt/fink/bin INSTALLSCRIPT=/opt/fink/bin
WARNING: AUTHOR takes a string/number not a ARRAY reference.
 Please inform the author.
Checking if your kit is complete...
Looks good
only nested arrays of non-refs are supported at 
/System/Library/Perl/5.12/ExtUtils/MakeMaker.pm line 664
### execution of ARCHFLAGS= failed, exit code 2
### execution of /tmp/fink.yCmh_ failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/opt/fink/bin/dpkg-lockwait -r fink-buildlock-io-socket-ssl-pm5124-1.92-1
(Reading database ... 182144 files and directories currently installed.)
Removing fink-buildlock-io-socket-ssl-pm5124-1.92-1 ...
Failed: phase compiling: io-socket-ssl-pm5124-1.92-1 failed


Installing fink's extutils-makemaker-pm5124 [2] allows the compilation to 
succeed.

Remi



[1] fink list makemaker
 extutils-makemaker-pm6.56-5Perl module to create a 
module Makefile
 extutils-makemaker-pm51236.64-1Perl module to create a 
module Makefile
 extutils-makemaker-pm5123-b[virtual package]
 p   extutils-makemaker-pm5124  [virtual package]
 extutils-makemaker-pm5124-b[virtual package]


[2] fink list makemaker
 extutils-makemaker-pm6.56-5Perl module to create a 
module Makefile
 extutils-makemaker-pm51236.64-1Perl module to create a 
module Makefile
 extutils-makemaker-pm5123-b[virtual package]
 i   extutils-makemaker-pm51246.64-1Perl module to create a 
module Makefile
 p   extutils-makemaker-pm5124-b[virtual package]



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Re: [Fink-users] Fink error installing root5

[Remi Mommsen]

Hi Dilu,

On Jun 24, 2012, at 3:32 PM, Divaratne, Dilupama wrote:

 Error report:
 
 Enabled support for asimage, astiff, builtin_afterimage, cintex, exceptions, 
 explicitlink, fftw3, gdml, krb5, ldap, genvector, mathmore, mysql, odbc, 
 opengl, python, reflex, roofit, minuit2, ruby, rpath, shared, soversion, ssl, 
 table, unuran, xft, xml, xrootd.
 
 To build ROOT type:
 
make
make install
 
 --disable-qt
 /tmp/fink.6Msix: line 17: --disable-qt: command not found
 ### execution of /tmp/fink.6Msix failed, exit code 127
 ### execution of /tmp/fink.W61gz failed, exit code 127
 Removing runtime build-lock...
 Removing build-lock package...
 /sw/bin/dpkg-lockwait -r fink-buildlock-root5-5.22.00b-11
 (Reading database ... 31015 files and directories currently installed.)
 Removing fink-buildlock-root5-5.22.00b-11 ...
 Failed: phase compiling: root5-5.22.00b-11 failed
 
 
 Hi,
 I installed a fresh copy of Mac OSX 10.6 SnowLeopard. Then installed Fink 
 0.33.1 from source and fink commander 0.5.5 from a binary. Then, I tried 
 installing root5 (root5-cernlib) after setting path and updating Fink. 
 However, after few hours of compiling I end up with the error reported above.
 Could you please help me resolve this problem.
 Thanks
 Dilu

The recent removal of the qt-variant left a few unescaped new lines behind. I 
committed a new version which should fix it. Please run 'fink selfupdate' to 
pick up the fixed version.

Thanks for reporting the problem.

Remi



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Re: [Fink-users] root5 and scipy from fink

[Remi Mommsen]

Hi Terry,

On May 1, 2012, at 5:23 PM, Alexander Hansen wrote:

 On 5/1/12 4:02 AM, Terence R Wyatt wrote:
 
 I am trying to use scipy-py27 in conjunction with root5, but am having
 version compatibility problems.

[SNIP]

Thanks for the report. It seems you're the first one trying to use scipy with 
ROOT from fink (:

 Ideally, I'd like to use in a consistent fashion the software I have
 installed using fink, since naively
 I'd have imagined that would be the best way to ensure a consistent set.
 Is there some way of forcing root5 
 to be made compatible with the fink-installed python 2.7.3?
 
 I use a MacBook Pro running OS X 10.7.3.
 
 Advice would be most welcome.
 
 
 Regards, Terry Wyatt.
 
 
 
 On 10.7 root5 explicitly builds against the built-in Python, so it
 appears that what you are seeing is the intended behavior.  I'm not a
 Python expert, so I don't know if you can recompile your installed
 ROOT.py and friends using Fink's python2.7 to work around this issue.
 
 Remi would be the one to address the usability question of having
 root5's python modules not be accessible to Fink's scipy.

I committed a new revision 13 of root5 which builds against fink's python23. I 
haven't found a way to make scipy built against fink's python to interplay with 
ROOT using the system python.

 For Remi:  Why didn't you use RuntimeVars to set PYTHONPATH?  :-)  It
 looks like you reinvented the wheel here.

Not quite: using RuntimeVars will set the PYTHONPATH, but overwrite any 
previous content. My script-snipples take care of preserving it.

Cheers,
Remi




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Re: [Fink-users] root5 and scipy from fink

[Remi Mommsen]

Hi Terry,

On May 2, 2012, at 12:54 PM, Terence R Wyatt wrote:

 
 Hi Remi,
 
 
 On 2 May 2012, at 11:44, Remi Mommsen wrote:
 
 I committed a new revision 13 of root5 which builds against fink's python23. 
 I haven't found a way to make scipy built against fink's python to interplay 
 with ROOT using the system python.
 
 Thanks for your information and action on this.
 
 Just checking:  did you mean fink's python 32 (rather than 23)?

No sorry, that should read python27.

 Assuming this to be the case should I do the following to benefit from the 
 new versions:
 fink purge scipy-py27
 fink install scipy-py32
 fink selfupdate
 fink update-all
 (in order to get root5 to update itself to the new version built against v3.2 
 python)?

Just wait until revision 13 of the root5 shows up in fink selfupdate. Then 
update-all. 

Remi




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Re: [Fink-users] root compilation error

[Remi Mommsen]

Hi,

On Jan 21, 2012, at 11:56 AM, Remi Mommsen wrote:

 Hi,
 
 sorry for the late reply, I've been pretty busy after the xmas break /:
 
 On Jan 17, 2012, at 6:05 PM, Alexander Hansen wrote:
 
 -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA1
 
 On 1/17/12 5:56 AM, Ivan Glushkov wrote:
 
 clang++ -dynamiclib -single_module -Wl,-dead_strip_dylibs
 -install_name /sw/lib/root/libMinuit2.5.dylib -O2 -m64
 -mmacosx-version-min=10.7 -o lib/libMinuit2.5.32.dylib
 math/minuit2/src/AnalyticalGradientCalculator.o
 math/minuit2/src/BasicMinimumError.o
 math/minuit2/src/CombinedMinimumBuilder.o
 math/minuit2/src/DavidonErrorUpdator.o
 math/minuit2/src/FitterUtil.o math/minuit2/src/FumiliBuilder.o
 math/minuit2/src/FumiliErrorUpdator.o
 math/minuit2/src/FumiliGradientCalculator.o
 math/minuit2/src/FumiliMinimizer.o
 math/minuit2/src/FumiliStandardChi2FCN.o
 math/minuit2/src/FumiliStandardMaximumLikelihoodFCN.o
 math/minuit2/src/HessianGradientCalculator.o
 math/minuit2/src/InitialGradientCalculator.o
 math/minuit2/src/LaEigenValues.o math/minuit2/src/LaInnerProduct.o
 math/minuit2/src/LaInverse.o math/minuit2/src/LaOuterProduct.o
 math/minuit2/src/LaSumOfElements.o
 math/minuit2/src/LaVtMVSimilarity.o math/minuit2/src/MPIProcess.o
 math/minuit2/src/Minuit2Minimizer.o
 math/minuit2/src/MnApplication.o math/minuit2/src/MnContours.o
 math/minuit2/src/MnCovarianceSqueeze.o math/minuit2/src/MnEigen.o
 math/minuit2/src/MnFcn.o math/minuit2/src/MnFumiliMinimize.o
 math/minuit2/src/MnFunctionCross.o
 math/minuit2/src/MnGlobalCorrelationCoeff.o
 math/minuit2/src/MnHesse.o math/minuit2/src/MnLineSearch.o
 math/minuit2/src/MnMachinePrecision.o math/minuit2/src/MnMinos.o
 math/minuit2/src/MnParabolaFactory.o
 math/minuit2/src/MnParameterScan.o math/minuit2/src/MnPlot.o
 math/minuit2/src/MnPosDef.o math/minuit2/src/MnPrint.o
 math/minuit2/src/MnScan.o math/minuit2/src/MnSeedGenerator.o
 math/minuit2/src/MnStrategy.o math/minuit2/src/MnTiny.o
 math/minuit2/src/MnUserFcn.o
 math/minuit2/src/MnUserParameterState.o
 math/minuit2/src/MnUserParameters.o
 math/minuit2/src/MnUserTransformation.o
 math/minuit2/src/ModularFunctionMinimizer.o
 math/minuit2/src/NegativeG2LineSearch.o
 math/minuit2/src/Numerical2PGradientCalculator.o
 math/minuit2/src/ParametricFunction.o
 math/minuit2/src/ScanBuilder.o math/minuit2/src/SimplexBuilder.o
 math/minuit2/src/SimplexParameters.o
 math/minuit2/src/SimplexSeedGenerator.o
 math/minuit2/src/SinParameterTransformation.o
 math/minuit2/src/SqrtLowParameterTransformation.o
 math/minuit2/src/SqrtUpParameterTransformation.o
 math/minuit2/src/TBinLikelihoodFCN.o
 math/minuit2/src/TChi2ExtendedFCN.o
 math/minuit2/src/TChi2ExtendedFitData.o math/minuit2/src/TChi2FCN.o
 math/minuit2/src/TChi2FitData.o math/minuit2/src/TFcnAdapter.o
 math/minuit2/src/TFitterFumili.o math/minuit2/src/TFitterMinuit.o
 math/minuit2/src/TFumiliFCN.o
 math/minuit2/src/VariableMetricBuilder.o
 math/minuit2/src/VariableMetricEDMEstimator.o
 math/minuit2/src/mnbins.o math/minuit2/src/mndasum.o
 math/minuit2/src/mndaxpy.o math/minuit2/src/mnddot.o
 math/minuit2/src/mndscal.o math/minuit2/src/mndspmv.o
 math/minuit2/src/mndspr.o math/minuit2/src/mnlsame.o
 math/minuit2/src/mnteigen.o math/minuit2/src/mntplot.o
 math/minuit2/src/mnvert.o math/minuit2/src/mnxerbla.o
 math/minuit2/src/G__Minuit2.o -ldl -Llib -lGraf -lHist -lMatrix
 -lMathCore -Llib -lCore -lCint -compatibility_version 5
 -current_version 5.32.00 Undefined symbols for architecture
 x86_64: _jpeg_CreateCompress, referenced from: _ASImage2jpeg in
 libAfterImage.a(export.o) _jpeg_stdio_dest, referenced from: 
 _ASImage2jpeg in libAfterImage.a(export.o) _jpeg_set_defaults,
 referenced from: _ASImage2jpeg in libAfterImage.a(export.o) 
 _jpeg_set_quality, referenced from: _ASImage2jpeg in
 libAfterImage.a(export.o) _jpeg_start_compress, referenced from: 
 _ASImage2jpeg in libAfterImage.a(export.o) _jpeg_write_scanlines,
 referenced from: _ASImage2jpeg in libAfterImage.a(export.o) 
 _jpeg_finish_compress, referenced from: _ASImage2jpeg in
 libAfterImage.a(export.o) _jpeg_destroy_compress, referenced
 from: _ASImage2jpeg in libAfterImage.a(export.o) _TIFFSetField,
 referenced from: _ASImage2tiff in libAfterImage.a(export.o) 
 _TIFFScanlineSize, referenced from: _ASImage2tiff in
 libAfterImage.a(export.o) __TIFFmemset, referenced from: 
 _ASImage2tiff in libAfterImage.a(export.o) _TIFFDefaultStripSize,
 referenced from: _ASImage2tiff in libAfterImage.a(export.o) 
 _TIFFWriteScanline, referenced from: _ASImage2tiff in
 libAfterImage.a(export.o) _jpeg_std_error, referenced from: 
 _jpeg2ASImage in libAfterImage.a(import.o) _ASImage2jpeg in
 libAfterImage.a(export.o) _jpeg_destroy_decompress, referenced
 from: _jpeg2ASImage in libAfterImage.a(import.o) 
 _jpeg_CreateDecompress, referenced from: _jpeg2ASImage in
 libAfterImage.a(import.o) _jpeg_stdio_src, referenced from: 
 _jpeg2ASImage in libAfterImage.a(import.o) _jpeg_read_header,
 referenced from: _jpeg2ASImage in libAfterImage.a

Re: [Fink-users] root5 compilation fails on 10.7

[Remi Mommsen]

Hi Dan,

On Jan 22, 2012, at 6:57 PM, Daniel Macks wrote:

 On Sat, 21 Jan 2012 17:58:09 +, Remi Mommsen 
 remigius.momm...@cern.ch wrote:
 On Jan 21, 2012, at 4:42 PM, Peter Dyballa wrote:
 Am 21.1.2012 um 11:56 schrieb Remi Mommsen:
 Why do you have libXft in /sw/lib? On my box, it's buried under 
 /sw/lib/xft2/lib/. Thus, root picks up the system one in 
 /usr/X11R6/lib as it should. 
 Because Fink installed it there! See:
 pete 254 /\ fink list -i | grep -i xft
 i  pango1-xft2-ft219 1.24.5-7 GTK+ - i18n libs (for freetype = 2.1.9)
 i  pango1-xft2-ft219-dev 1.24.5-7 GTK+ - i18n text development 
 headers and libraries (for freetype = 2.1.9)
 i  pango1-xft2-ft219-shlibs 1.24.5-7 GTK+ - i18n text shared 
 libraries (for freetype = 2.1.9)
 i  system-pkgconfig-xft 2.1.13-1 [virtual pkgconfig package 
 representing xft]
 p  xft1 [virtual package]
 p  xft1-dev [virtual package]
 p  xft1-shlibs [virtual package]
 p  xft2 [virtual package]
 i  xft2-dev 2.2.0-2 FreeType font support for X11 apps
 i  xft2-shlibs 2.2.0-2 FreeType font support for X11 apps
 pete 255 /\ l /sw/lib/libXft*
 lrwxr-xr-x  1 root  admin  31  7 Sep 21:12 /sw/lib/libXft.dylib - 
 /sw/lib/xft2/./lib/libXft.dylib
 lrwxr-xr-x  1 root  admin  28  7 Sep 21:12 /sw/lib/libXft.la - 
 /sw/lib/xft2/./lib/libXft.la
 pete 256 /\ dpkg -S /sw/lib/libXft.dylib
 xft2-dev: /sw/lib/libXft.dylib
 
 I see. Removing xft2-dev should allow you to build root5. 
 Unfortunately, a buildconflict on xft2-dev does not work as it should 
 (c.f. my posting to fink-devel). 
 
 The root5 in my cvs exp builds and passes all tests on 10.7 *with* the 
 latest xft2-dev there installed. 

Thanks for looking into this. I committed a new revision which incorporates 
your changes.

Remi




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Re: [Fink-users] root5 compilation fails on 10.7

[Remi Mommsen]

Hi Attila,

sorry for the slow reply. I was pretty busy after the xmas break.

On Jan 3, 2012, at 7:18 PM, Attila Krasznahorkay wrote:

 Dear Remi,
 
 I was trying to install ROOT 5.32 on 10.7, as using Fink for this seemed a 
 bit easier than compiling XRootD and ROOT by hand. (In the past few years I 
 always compiled ROOT by hand, as Fink was always trailing in version numbers 
 by a lot.)
 
 Unfortunately the configuration script of ROOT fails like this (sorry for the 
 long log...):
 
 gzip -dc /sw/src/root_v5.32.00.source.tar.gz | /sw/bin/tar -xf -  
 --no-same-owner --no-same-permissions 
 [ -r /sw/fink/dists/stable/main/finkinfo/sci/root5.patch ]
 patch -p1  /sw/fink/dists/stable/main/finkinfo/sci/root5.patch
 patching file configure
 patching file cint/configure
 patching file cint/ROOT/cintdlls.mk
 patching file build/unix/makelib.sh
 patching file config/Makefile.macosx64
 patching file etc/Makefile.arch
 /var/tmp/tmp.1.X1ETA7
 #!/bin/sh -ev
 ./configure macosx64 --prefix=/sw --etcdir=/sw/etc/root \
 --docdir=/sw/share/doc/root5 \
 --libdir=/sw/lib/root \
 --testdir=/sw/share/root/test \
 --tutdir=/sw/share/root/tutorials \
 --with-fftw3-incdir=/sw/include --with-fftw3-libdir=/sw/lib \
 --with-gviz-incdir=/sw/include --with-gviz-libdir=/sw/lib \
 --with-gsl-incdir=/sw/include --with-gsl-libdir=/sw/lib \
 --with-mysql-incdir=/sw/include/mysql --with-mysql-libdir=/sw/lib/mysql \
 --with-xml-incdir=/sw/include/libxml2 --with-xml-libdir=/sw/lib \
 --with-xrootd=/sw \
 --disable-afs \
 --disable-builtin-freetype \
 --disable-builtin-glew \
 --disable-builtin-lzma \
 --disable-builtin-pcre \
 --disable-builtin-zlib \
 --disable-builtin_ftgl \
 --enable-gdml \
 --enable-minuit2 \
 --enable-roofit \
 --enable-ruby \
 --enable-soversion \
 --enable-table \
 --enable-unuran --with-f77=' '
 Checking for source directory ... /sw/src/fink.build/root5-5.32.00-11/root
 Configuring for macosx64
 Checking for GNU Make version = 3.80 ... ok
 Checking for C compiler ... clang
 Checking for C++ compiler ... clang++
 Checking for linker (LD) ... clang++
 Checking for F77 compiler ... no F77 compiler   found
 Checking for libX11 ... /usr/X11R6/lib
 Checking for X11/Xlib.h ... /usr/include
 Checking for X11/xpm.h ... /usr/include
 Checking for X11/Xft/Xft.h ... /sw/include
 Checking for X11/extensions/shape.h ... /usr/include
 Checking for libXpm ... /usr/X11R6/lib
 Checking for libXft ... /sw/lib
 configure: libXft not in same directory as libX11
 For consistency they should be in the same directory
 ### execution of /var/tmp/tmp.1.X1ETA7 failed, exit code 1

Why do you have libXft in /sw/lib? On my box, it's buried under 
/sw/lib/xft2/lib/. Thus, root picks up the system one in /usr/X11R6/lib as it 
should.


 fink install root5 at least installed xrootd, so I should be able to 
 install ROOT 5.32 by hand now, but it would be a nice feature if I could go 
 back to using the Fink version of ROOT.
 
 But to do this, I should give another warning: I haven't had much success 
 with XCode's compilers and ROOT on Snow Leopard. With ROOT 5.30.05 for 
 instance I got a fully functional installation by specifying these options to 
 ROOT's configure script:
 
 --enable-table --enable-roofit --enable-builtin-pcre --with-cc=gcc-4 
 --with-cxx=g++-4 --with-f77=gfortran --with-ld=g++-4
 
 So as you can see, I chose to use Fink's GCC 4.6 for the compilation instead 
 of Apple's. (One of my analysis codes uses exceptions extensively, and for 
 some reason this code always crashed when I used Apple's compiler. With 
 Fink's GCC it has no problems.)
 
 All in all, you should strongly consider using Fink's GCC for the compilation 
 as well when you're updating the root5 package.

ROOT adopted clang as the official compiler for root 5.32 on 10.7. Thus, if you 
see any problems with 5.32 and clang, you should ask the root developers for 
help.

Remi



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Re: [Fink-users] root compilation error

[Remi Mommsen]

Hi,

sorry for the late reply, I've been pretty busy after the xmas break /:

On Jan 17, 2012, at 6:05 PM, Alexander Hansen wrote:

 -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA1
 
 On 1/17/12 5:56 AM, Ivan Glushkov wrote:
 Hi guys,
 
 I am trying to install with fink root5-5.32.00-11 package and I get
 the error below.. I have no idea why clang++ is used instead of
 g++..
 
 We use clang by default on 10.7, and it looks like the maintainer set
 that explicitly.  I'm assuming that's what OS version you're using,
 since you didn't provide that information.

Yep. ROOT now uses clang as default compiler on 10.7.

 
 clang++ -dynamiclib -single_module -Wl,-dead_strip_dylibs
 -install_name /sw/lib/root/libMinuit2.5.dylib -O2 -m64
 -mmacosx-version-min=10.7 -o lib/libMinuit2.5.32.dylib
 math/minuit2/src/AnalyticalGradientCalculator.o
 math/minuit2/src/BasicMinimumError.o
 math/minuit2/src/CombinedMinimumBuilder.o
 math/minuit2/src/DavidonErrorUpdator.o
 math/minuit2/src/FitterUtil.o math/minuit2/src/FumiliBuilder.o
 math/minuit2/src/FumiliErrorUpdator.o
 math/minuit2/src/FumiliGradientCalculator.o
 math/minuit2/src/FumiliMinimizer.o
 math/minuit2/src/FumiliStandardChi2FCN.o
 math/minuit2/src/FumiliStandardMaximumLikelihoodFCN.o
 math/minuit2/src/HessianGradientCalculator.o
 math/minuit2/src/InitialGradientCalculator.o
 math/minuit2/src/LaEigenValues.o math/minuit2/src/LaInnerProduct.o
 math/minuit2/src/LaInverse.o math/minuit2/src/LaOuterProduct.o
 math/minuit2/src/LaSumOfElements.o
 math/minuit2/src/LaVtMVSimilarity.o math/minuit2/src/MPIProcess.o
 math/minuit2/src/Minuit2Minimizer.o
 math/minuit2/src/MnApplication.o math/minuit2/src/MnContours.o
 math/minuit2/src/MnCovarianceSqueeze.o math/minuit2/src/MnEigen.o
 math/minuit2/src/MnFcn.o math/minuit2/src/MnFumiliMinimize.o
 math/minuit2/src/MnFunctionCross.o
 math/minuit2/src/MnGlobalCorrelationCoeff.o
 math/minuit2/src/MnHesse.o math/minuit2/src/MnLineSearch.o
 math/minuit2/src/MnMachinePrecision.o math/minuit2/src/MnMinos.o
 math/minuit2/src/MnParabolaFactory.o
 math/minuit2/src/MnParameterScan.o math/minuit2/src/MnPlot.o
 math/minuit2/src/MnPosDef.o math/minuit2/src/MnPrint.o
 math/minuit2/src/MnScan.o math/minuit2/src/MnSeedGenerator.o
 math/minuit2/src/MnStrategy.o math/minuit2/src/MnTiny.o
 math/minuit2/src/MnUserFcn.o
 math/minuit2/src/MnUserParameterState.o
 math/minuit2/src/MnUserParameters.o
 math/minuit2/src/MnUserTransformation.o
 math/minuit2/src/ModularFunctionMinimizer.o
 math/minuit2/src/NegativeG2LineSearch.o
 math/minuit2/src/Numerical2PGradientCalculator.o
 math/minuit2/src/ParametricFunction.o
 math/minuit2/src/ScanBuilder.o math/minuit2/src/SimplexBuilder.o
 math/minuit2/src/SimplexParameters.o
 math/minuit2/src/SimplexSeedGenerator.o
 math/minuit2/src/SinParameterTransformation.o
 math/minuit2/src/SqrtLowParameterTransformation.o
 math/minuit2/src/SqrtUpParameterTransformation.o
 math/minuit2/src/TBinLikelihoodFCN.o
 math/minuit2/src/TChi2ExtendedFCN.o
 math/minuit2/src/TChi2ExtendedFitData.o math/minuit2/src/TChi2FCN.o
 math/minuit2/src/TChi2FitData.o math/minuit2/src/TFcnAdapter.o
 math/minuit2/src/TFitterFumili.o math/minuit2/src/TFitterMinuit.o
 math/minuit2/src/TFumiliFCN.o
 math/minuit2/src/VariableMetricBuilder.o
 math/minuit2/src/VariableMetricEDMEstimator.o
 math/minuit2/src/mnbins.o math/minuit2/src/mndasum.o
 math/minuit2/src/mndaxpy.o math/minuit2/src/mnddot.o
 math/minuit2/src/mndscal.o math/minuit2/src/mndspmv.o
 math/minuit2/src/mndspr.o math/minuit2/src/mnlsame.o
 math/minuit2/src/mnteigen.o math/minuit2/src/mntplot.o
 math/minuit2/src/mnvert.o math/minuit2/src/mnxerbla.o
 math/minuit2/src/G__Minuit2.o -ldl -Llib -lGraf -lHist -lMatrix
 -lMathCore -Llib -lCore -lCint -compatibility_version 5
 -current_version 5.32.00 Undefined symbols for architecture
 x86_64: _jpeg_CreateCompress, referenced from: _ASImage2jpeg in
 libAfterImage.a(export.o) _jpeg_stdio_dest, referenced from: 
 _ASImage2jpeg in libAfterImage.a(export.o) _jpeg_set_defaults,
 referenced from: _ASImage2jpeg in libAfterImage.a(export.o) 
 _jpeg_set_quality, referenced from: _ASImage2jpeg in
 libAfterImage.a(export.o) _jpeg_start_compress, referenced from: 
 _ASImage2jpeg in libAfterImage.a(export.o) _jpeg_write_scanlines,
 referenced from: _ASImage2jpeg in libAfterImage.a(export.o) 
 _jpeg_finish_compress, referenced from: _ASImage2jpeg in
 libAfterImage.a(export.o) _jpeg_destroy_compress, referenced
 from: _ASImage2jpeg in libAfterImage.a(export.o) _TIFFSetField,
 referenced from: _ASImage2tiff in libAfterImage.a(export.o) 
 _TIFFScanlineSize, referenced from: _ASImage2tiff in
 libAfterImage.a(export.o) __TIFFmemset, referenced from: 
 _ASImage2tiff in libAfterImage.a(export.o) _TIFFDefaultStripSize,
 referenced from: _ASImage2tiff in libAfterImage.a(export.o) 
 _TIFFWriteScanline, referenced from: _ASImage2tiff in
 libAfterImage.a(export.o) _jpeg_std_error, referenced from: 
 _jpeg2ASImage in libAfterImage.a(import.o) _ASImage2jpeg in
 

Re: [Fink-users] root5 compilation fails on 10.7

[Remi Mommsen]

Hi Pete,

On Jan 21, 2012, at 4:42 PM, Peter Dyballa wrote:

 
 Am 21.1.2012 um 11:56 schrieb Remi Mommsen:
 
 Why do you have libXft in /sw/lib? On my box, it's buried under 
 /sw/lib/xft2/lib/. Thus, root picks up the system one in /usr/X11R6/lib as 
 it should.
 
 Because Fink installed it there! See:
 
 pete 254 /\ fink list -i | grep -i xft
 i pango1-xft2-ft219   1.24.5-7GTK+ - i18n libs (for freetype 
 = 2.1.9)
 i pango1-xft2-ft219-dev   1.24.5-7GTK+ - i18n text development 
 headers and libraries (for freetype = 2.1.9)
 i pango1-xft2-ft219-shlibs1.24.5-7GTK+ - i18n text shared 
 libraries (for freetype = 2.1.9)
 i system-pkgconfig-xft2.1.13-1[virtual pkgconfig package 
 representing xft]
 p xft1[virtual package]
 p xft1-dev[virtual package]
 p xft1-shlibs [virtual package]
 p xft2[virtual package]
 i xft2-dev2.2.0-2 FreeType font support for X11 apps
 i xft2-shlibs 2.2.0-2 FreeType font support for X11 apps
 pete 255 /\ l /sw/lib/libXft*
 lrwxr-xr-x  1 root  admin  31  7 Sep 21:12 /sw/lib/libXft.dylib - 
 /sw/lib/xft2/./lib/libXft.dylib
 lrwxr-xr-x  1 root  admin  28  7 Sep 21:12 /sw/lib/libXft.la - 
 /sw/lib/xft2/./lib/libXft.la
 pete 256 /\ dpkg -S /sw/lib/libXft.dylib
 xft2-dev: /sw/lib/libXft.dylib

I see. Removing xft2-dev should allow you to build root5. Unfortunately, a 
buildconflict on xft2-dev does not work as it should (c.f. my posting to 
fink-devel).

Remi



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[Fink-users] fuse4x-dev-0.8.13-2 fails compiling

[Remi Mommsen]

Hi,

I try to build fuse4x-dev-0.8.13-2 on 10.7. However, the configure step fails 
(see below). I installed gettext-tools, which does provide iconv.m4 defining 
AM_ICONV, but the configure still fails in the same way.

Thanks,
Remi



/var/tmp/tmp.1.Oer1j2
#!/bin/sh -ev

autoreconf -f -i -Wall,no-obsolete
configure.in:77: warning: macro `AM_ICONV' not found in library
glibtoolize: putting auxiliary files in `.'.
glibtoolize: copying file `./ltmain.sh'
glibtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'.
glibtoolize: copying file `m4/libtool.m4'
glibtoolize: copying file `m4/ltoptions.m4'
glibtoolize: copying file `m4/ltsugar.m4'
glibtoolize: copying file `m4/ltversion.m4'
glibtoolize: copying file `m4/lt~obsolete.m4'
glibtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
configure.in:77: warning: macro `AM_ICONV' not found in library
configure.in:77: error: possibly undefined macro: AM_ICONV
  If this token and others are legitimate, please use m4_pattern_allow.
  See the Autoconf documentation.
autoreconf: /usr/bin/autoconf failed with exit status: 1
### execution of /var/tmp/tmp.1.Oer1j2 failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/opt/fink/bin/dpkg-lockwait -r fink-buildlock-fuse4x-dev-0.8.13-2
(Reading database ... 145410 files and directories currently installed.)
Removing fink-buildlock-fuse4x-dev-0.8.13-2 ...
Failed: phase compiling: fuse4x-dev-0.8.13-2 failed

Also include the following system information:
Package manager version: 0.31.5
Distribution version: selfupdate-cvs Fri Dec  2 10:55:30 2011, 10.7, x86_64
Trees: local/main stable/main
Xcode: 4.2



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Re: [Fink-users] fuse4x-dev-0.8.13-2 fails compiling

[Remi Mommsen]

Hi Alexander,

On Dec 2, 2011, at 1:19 PM, Alexander Hansen wrote:

 -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA1
 
 On 12/2/11 5:19 AM, Remi Mommsen wrote:
 Hi,
 
 I try to build fuse4x-dev-0.8.13-2 on 10.7. However, the configure
 step fails (see below). I installed gettext-tools, which does
 provide iconv.m4 defining AM_ICONV, but the configure still fails
 in the same way.
 
 Thanks, Remi
 
 
 
 /var/tmp/tmp.1.Oer1j2 #!/bin/sh -ev
 
 autoreconf -f -i -Wall,no-obsolete configure.in:77: warning: macro
 `AM_ICONV' not found in library glibtoolize: putting auxiliary
 files in `.'. glibtoolize: copying file `./ltmain.sh' glibtoolize:
 putting macros in AC_CONFIG_MACRO_DIR, `m4'. glibtoolize: copying
 file `m4/libtool.m4' glibtoolize: copying file `m4/ltoptions.m4' 
 glibtoolize: copying file `m4/ltsugar.m4' glibtoolize: copying file
 `m4/ltversion.m4' glibtoolize: copying file `m4/lt~obsolete.m4' 
 glibtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in
 Makefile.am. configure.in:77: warning: macro `AM_ICONV' not found
 in library configure.in:77: error: possibly undefined macro:
 AM_ICONV If this token and others are legitimate, please use
 m4_pattern_allow. See the Autoconf documentation. autoreconf:
 /usr/bin/autoconf failed with exit status: 1 ### execution of
 /var/tmp/tmp.1.Oer1j2 failed, exit code 1 Removing runtime
 build-lock... Removing build-lock package... 
 /opt/fink/bin/dpkg-lockwait -r fink-buildlock-fuse4x-dev-0.8.13-2 
 (Reading database ... 145410 files and directories currently
 installed.) Removing fink-buildlock-fuse4x-dev-0.8.13-2 ... Failed:
 phase compiling: fuse4x-dev-0.8.13-2 failed
 
 Also include the following system information: Package manager
 version: 0.31.5 Distribution version: selfupdate-cvs Fri Dec  2
 10:55:30 2011, 10.7, x86_64 Trees: local/main stable/main Xcode:
 4.2
 
 
 
 
 Let's start with the usual suspects.  What do you get from
 
 which autoreconf

$ which autoreconf
/usr/bin/autoreconf


Installing the fink 'autoconf' package leads to this error message:

#!/bin/sh -ev

autoreconf -f -i -Wall,no-obsolete
configure.in:77: warning: macro `AM_ICONV' not found in library
aclocal.m4:14: error: this file was generated for autoconf 2.61.
You have another version of autoconf.  If you want to use that,
you should regenerate the build system entirely.
aclocal.m4:14: the top level
autom4te-2.63: /opt/fink/bin/m4 failed with exit status: 63
aclocal.m4:14: error: this file was generated for autoconf 2.61.
You have another version of autoconf.  If you want to use that,
you should regenerate the build system entirely.
aclocal.m4:14: the top level
autom4te-2.63: /opt/fink/bin/m4 failed with exit status: 63
autoreconf: /opt/fink/bin/autoconf-2.63 failed with exit status: 63
### execution of /var/tmp/tmp.1.ONwELA failed, exit code 63
Removing runtime build-lock...
Removing build-lock package...
/opt/fink/bin/dpkg-lockwait -r fink-buildlock-fuse4x-dev-0.8.13-2
(Reading database ... 145528 files and directories currently installed.)
Removing fink-buildlock-fuse4x-dev-0.8.13-2 ...
Failed: phase compiling: fuse4x-dev-0.8.13-2 failed



Thanks,
Remi



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Re: [Fink-users] fuse4x-dev-0.8.13-2 fails compiling

[Remi Mommsen]

Hi,

On Dec 2, 2011, at 1:37 PM, Alexander Hansen wrote:

 -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA1
 
 On 12/2/11 7:26 AM, Remi Mommsen wrote:
 Hi Alexander,
 
 On Dec 2, 2011, at 1:19 PM, Alexander Hansen wrote:
 
 -BEGIN PGP SIGNED MESSAGE- Hash: SHA1
 
 On 12/2/11 5:19 AM, Remi Mommsen wrote:
 Hi,
 
 I try to build fuse4x-dev-0.8.13-2 on 10.7. However, the
 configure step fails (see below). I installed gettext-tools,
 which does provide iconv.m4 defining AM_ICONV, but the
 configure still fails in the same way.
 
 Thanks, Remi
 
 
 
 /var/tmp/tmp.1.Oer1j2 #!/bin/sh -ev
 
 autoreconf -f -i -Wall,no-obsolete configure.in:77: warning:
 macro `AM_ICONV' not found in library glibtoolize: putting
 auxiliary files in `.'. glibtoolize: copying file `./ltmain.sh'
 glibtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'.
 glibtoolize: copying file `m4/libtool.m4' glibtoolize: copying
 file `m4/ltoptions.m4' glibtoolize: copying file
 `m4/ltsugar.m4' glibtoolize: copying file `m4/ltversion.m4'
 glibtoolize: copying file `m4/lt~obsolete.m4' glibtoolize:
 Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
 configure.in:77: warning: macro `AM_ICONV' not found in library
 configure.in:77: error: possibly undefined macro: AM_ICONV If
 this token and others are legitimate, please use 
 m4_pattern_allow. See the Autoconf documentation. autoreconf: 
 /usr/bin/autoconf failed with exit status: 1 ### execution of 
 /var/tmp/tmp.1.Oer1j2 failed, exit code 1 Removing runtime 
 build-lock... Removing build-lock package... 
 /opt/fink/bin/dpkg-lockwait -r
 fink-buildlock-fuse4x-dev-0.8.13-2 (Reading database ... 145410
 files and directories currently installed.) Removing
 fink-buildlock-fuse4x-dev-0.8.13-2 ... Failed: phase compiling:
 fuse4x-dev-0.8.13-2 failed
 
 Also include the following system information: Package manager 
 version: 0.31.5 Distribution version: selfupdate-cvs Fri Dec
 2 10:55:30 2011, 10.7, x86_64 Trees: local/main stable/main
 Xcode: 4.2
 
 
 
 
 Let's start with the usual suspects.  What do you get from
 
 which autoreconf
 
 $ which autoreconf /usr/bin/autoreconf
 
 
 Installing the fink 'autoconf' package leads to this error
 message:
 
 #!/bin/sh -ev
 
 autoreconf -f -i -Wall,no-obsolete configure.in:77: warning: macro
 `AM_ICONV' not found in library aclocal.m4:14: error: this file was
 generated for autoconf 2.61. You have another version of autoconf.
 If you want to use that, you should regenerate the build system
 entirely. aclocal.m4:14: the top level autom4te-2.63:
 /opt/fink/bin/m4 failed with exit status: 63 aclocal.m4:14: error:
 this file was generated for autoconf 2.61. You have another version
 of autoconf.  If you want to use that, you should regenerate the
 build system entirely. aclocal.m4:14: the top level autom4te-2.63:
 /opt/fink/bin/m4 failed with exit status: 63 autoreconf:
 /opt/fink/bin/autoconf-2.63 failed with exit status: 63 ###
 execution of /var/tmp/tmp.1.ONwELA failed, exit code 63 Removing
 runtime build-lock... Removing build-lock package... 
 /opt/fink/bin/dpkg-lockwait -r fink-buildlock-fuse4x-dev-0.8.13-2 
 (Reading database ... 145528 files and directories currently
 installed.) Removing fink-buildlock-fuse4x-dev-0.8.13-2 ... Failed:
 phase compiling: fuse4x-dev-0.8.13-2 failed
 
 
 
 Thanks, Remi
 
 
 
 
 It worked for me just now, even with fink's autoconf, so something
 else must be the cause.  Do you have libtool2 installed?

Interesting. I had only libtool2-shlibs installed. Installing libtool2 does not 
change anything.

However, installing 'automake1.11', 'gettext-tools', and 'libtool2' solves the 
problem.

Thanks,
Remi




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Re: [Fink-users] Error in gcc installation

[Remi Mommsen]

Hi Terence,

On Oct 12, 2011, at 2:37 AM, Terence Libeiro wrote:

 Sorry, 
 
 Here's the relevant information. 
 
 -
 $ fink -V | head -n 3
 Package manager version: 0.31.2
 Distribution version: selfupdate-rsync Sun Oct  9 20:19:12 2011, 10.7, x86_64
 Trees: local/main stable/main
 $ xcodebuild -version
 Xcode 4.1
 Build version 4B110
 ---
 I have recently installed gcc 4.5.3 and gfortran, but I don't 
 have other cern libs like libblas liblapack3 etc, 
 and I was hoping they were included in the complete cernlib package.

If you are looking for libblas and liblapack, they are already on your system 
under /usr/lib. CERNLIB does not provide these libraries.

Remi



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Re: [Fink-users] cernlib 2006b-15 with fink on Lion

[Remi Mommsen]

Hi Alex et al,

On Oct 5, 2011, at 8:34 PM, Alexander Hansen wrote:

 For Remi:
 If this is indeed the case you should probably mark those make
 install.bin and make install.include commands in the CompileScript
 to use a single thread via make -j1 install.bin and make -j1
 install.include.  Install operations tend to be error-prone under
 multiple threads, which is why fink forces -j1 in the Install phase.
 
 If that doesn't work you may need to mark the package as
 UseMaxBuildJobs: false to force the use of a single processor thread
 globally.

Thanks for the quick diagnosis and solution. I tried to use '-j1' for the 
installs, but it still fails. Thus, I just committed a new version which sets 
'UseMaxBuildJobs: false'.

Remi



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Re: [Fink-users] cernlib and fink

[Remi Mommsen]

Hi,

On Aug 18, 2011, at 4:47 PM, Remi Mommsen wrote:

 Hi,
 
 On Aug 18, 2011, at 1:52 AM, Alexander Hansen wrote:
 
 I'll address the remainder of the message to the cernlib maintainer,
 since he would be the most likely one to know if, in fact, the package
 is currently working properly on Lion.
 
 paw is currently broken on Lion. I haven't had time to look into it. However, 
 it runs fine under gdb, i.e. if you do 'gdb pawX11', it works.

I just committed a new version of cernlib for Lion, which has a working paw. 
Instead of calling pawX11 directly, I call it via a wrapper (disableASLR) which 
I wrote myself. This wrapper spans the pawX11 executable similar to gdb with 
the memory randomization (ASLR) disabled.

Enjoy,
Remi


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[Fink-users] pwgen for 10.7?

[Remi Mommsen]

Hi Beat,

your fink package pwgen seems to work fine on 10.7. Any objections if I add it 
to the 10.7/stable tree?

Remi


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Re: [Fink-users] [Fink-beginners] cernlib and fink

[Remi Mommsen]

Hi,

On Aug 18, 2011, at 1:52 AM, Alexander Hansen wrote:

 -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA1
 
 On 8/17/11 11:11 AM, Luigi Ernesto Zanotti wrote:
 Hello, here is my machine cobfiguration:
 
 iMac with Mac OS X Lion (10.7) Fink manager version: 0.31.0 
 Distribution version: selfupdate-rsync Mon Aug 15 21:26:49 2011,
 10.7, x86_64 Trees: local/main stable/main Xcode Version: 4.1-1
 
 After the successful installation of  fink I tried to install 
 cernlib, that I need to keep operating some old codes, still
 useful for my job.
 
 snip
 
 5 - To check the result, I looked for pawX11 and paw++, and
 tried them. Here the outputs:
 
 PAW++ [1] func/plot sin(x)/x Paw++ /FUNCTION/PLOT 'sin(x)/x' '-10'
 '10' 'C' CSALLO: pointer difference too large to be represented by
 integer. You probably need to link PAW statically on 64-bit systems.
 
 
 *** Application has died or is running in a loop. ***
 
 Kxterm has been disconnected from application. Select Exit from the
 File menu to exit Kxterm.
 
 
 PAW  func/plot sin(x)/x Lower limit (CR=) -10. Upper limit (CR=)
 10. CSALLO: pointer difference too large to be represented by
 integer. You probably need to link PAW statically on 64-bit systems.
 
 At this point the absence of pointer_t in vm_types.h seems to be
 the origin of the malfunction, but I don't know how to bypass the
 conflict with the module 
 /sw/src/fink.build/gcc46-4.6.1-1000/gcc-4.6.1/gcc/fortran/module.c.
 
 Does anybody know how to get out of this problem?
 
 Thanks in advance. Yours Luigi Zanotti
 
 -- Prof. Luigi E. Zanotti Physics Department G. Occhialini 
 University of Milano-Bicocca  INFN Piazza della Scienza 3 - 20126
 Milano - Italy
 
 Tel.: +39 02 6448 2460 +39 349 0997239 E-mail:
 luigi.zano...@mib.infn.it
 
 
 
 
 I'll address the remainder of the message to the cernlib maintainer,
 since he would be the most likely one to know if, in fact, the package
 is currently working properly on Lion.

paw is currently broken on Lion. I haven't had time to look into it. However, 
it runs fine under gdb, i.e. if you do 'gdb pawX11', it works.

Remi


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Re: [Fink-users] CERNLIB prospects on Lion

[Remi Mommsen]

Hi,



On Jul 29, 2011, at 9:24 AM, Attila Krasznahorkay wrote:

 Hi Alex,
 
 Thanks a lot for making it available.
 
 Unfortunately the library shows the same problems in 64-bit that I observed 
 when I tried to use it in 64-bits on Linux. :-( One very simple way of 
 causing a problem in the libraries is for instance to start the paw 
 application and execute:
 
 fun/pl sin(x) 1 10
 
 (This is supposed to draw a plot of the sinus function between 1 and 10.)

I guess you get the error about long jump. I managed to work around this by 
tweaking the memory layout for the CERNLIB on Snow Leopard. I feared that this 
might not work on Lion as is. I'll have to look into it once I get a machine 
running Lion. Sight.

 I also tried linking my old C(++) codes against the libraries, but those show 
 a lot of problems as well. :-( (Although at this stage I'm not a 100% sure 
 that all of these problems come from a problem with CERNLIB, or if I'm 
 messing up something else as well.)
 
 Unfortunately I do realize that updating CERNLIB to work properly on 64 bits 
 would be quite a herculean task, so I don't even dare to ask Remi if he plans 
 to do something like it. Instead I'll have to look for other ways of making 
 my old codes work on Lion...

I guess that's the safer way. The gap btw fortran 66 memory management and 
Lion's architecture might get too wide to bridge.

Remi
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Re: [Fink-users] CERNLIB prospects on Lion

[Remi Mommsen]

Hi Attila,

On Jul 28, 2011, at 9:53 AM, Attila Krasznahorkay wrote:

 Dear Remi,
 
 I saw that you just now added the 64-bit build of CERNLIB on Snow Leopard to 
 the available packages on Fink. Should I start be hopeful that we could get 
 it also for 10.7 in the (near) future?


The main motivation to get CERNLIB on 64-bit working is clearly the perspective 
to bring it to 10.7. However, I haven't had a chance to try it on 10.7. Thus, I 
cannot tell you yet if and when this will happen.

Remi


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Re: [Fink-users] Failed: phase compiling: clamav-0.96.5-11 failed

[Remi Mommsen]

Hi,

On Dec 1, 2010, at 3:29 PM, Matthew Parry wrote:

 
 i have the same error on an intel MBP also running 10.4.11
 
 On 30 Nov 2010, at 22:46, Dominique Dhumieres wrote:
 
 Hi Remi,
 
 On a G4 OSX 10.4.11, updating to clamav-0.96.5-11 failed with:
 
 ...
 /bin/sh ../libtool --silent --tag=CC   --mode=compile /sw/bin/gcc-4  
 -DHAVE_CONFIG_H -I. -I..  -I.. -I./nsis  -DWARN_DLOPEN_FAIL -I/sw/ 
 include -fPIC -DPIC -O3 -fno-strict-aliasing -c -o  
 libclamav_internal_utils_la-regfree.lo `test -f 'regex/regfree.c'  
 || echo './'`regex/regfree.c
  CCLD   libclamav_internal_utils.la
  CCLD   libclamav.la
 /usr/bin/ld: warning multiple definitions of symbol _abort
 .libs/libclamav.lax/libclamavcxx.a/Signals.o definition of _abort  
 in section (__TEXT,__text)
 /usr/lib/libm.dylib(abort.So) definition of _abort
 /usr/bin/ld: Undefined symbols:
 ___crashreporter_info__
 collect2: ld a retourn'e 1 code d''etat d'ex'ecution
 make[4]: *** [libclamav.la] Error 1
 make[3]: *** [all-recursive] Error 1
 make[2]: *** [all] Error 2
 make[1]: *** [all-recursive] Error 1
 make: *** [all] Error 2
 ### execution of /var/tmp/tmp.1.wae2O9 failed, exit code 2
 Removing runtime build-lock...
 Removing build-lock package...
 /sw/bin/dpkg-lockwait -r fink-buildlock-clamav-0.96.5-11
 (Reading database ... 445696 files and directories currently  
 installed.)
 Removing fink-buildlock-clamav-0.96.5-11 ...
 Failed: phase compiling: clamav-0.96.5-11 failed

There's a bug report open at clamav.net:
https://wwws.clamav.net/bugzilla/show_bug.cgi?id=2402

I do not have access to a 10.4 machine. Thus, I cannot test it. If you want to 
contribute to resolve this issue upstream, you're surely welcome.

Remi


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Re: [Fink-users] Failed: phase compiling: clamav-0.96.1-11 failed

[Remi Mommsen]

Hi,

On Jun 2, 2010, at 9:16 AM, Sean Lake wrote:

 Hello all,
 
 In the wake of news about some spyware spreading for Macs, I decided to 
 finally get clamav installed. Sadly, there's a bit of an error during 
 compilation.
 
 checking for gcc... /sw/lib/gcc4.4/bin/gcc
 checking whether the C compiler works... no
 configure: error: in `/sw/src/fink.build/clamav-0.96.1-11/clamav-0.96.1':
 configure: error: C compiler cannot create executables
 See `config.log' for more details.
 ### execution of /var/tmp/tmp.1.9NDjGo failed, exit code 77
 Removing runtime build-lock...
 Removing build-lock package...
 /sw/bin/dpkg-lockwait -r fink-buildlock-clamav-0.96.1-11
 (Reading database ... 192209 files and directories currently installed.)
 Removing fink-buildlock-clamav-0.96.1-11 ...
 Failed: phase compiling: clamav-0.96.1-11 failed

It looks like the latest gcc44 update broke the compilation. I haven't had time 
to look into the details. But you could install the gcc44 from stable, i.e. do

fink install gcc44-4.4.1
fink install clamav

 Of course when I type which gcc I get /usr/bin/gcc, so I'm not sure why 
 it's going for the on in sw.

clamav explicitly uses a newer compiler than the stock compiler due to 
performance issues. There was also a bug in Apple's gcc which caused clamav to 
fail. (Not sure if that's still the case for 10.6, thought.)

 Version info:
 fink --version
 Package manager version: 0.29.10
 Distribution version: selfupdate-rsync Tue Jun  1 13:50:16 2010, 10.6, x86_64

BTW: the same problem is also present on 10.5.8 PPC according to other feedback 
I've got so far.

Remi
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Re: [Fink-users] Failed: phase compiling: clamav-0.96.1-11 failed

[Remi Mommsen]

Hi,

On Jun 2, 2010, at 11:41 AM, Sean Lake wrote:

 
 On Jun 2, 2010, at 2:17, Martin Costabel wrote:
 
 Sean Lake wrote:
 Hello all,
 In the wake of news about some spyware spreading for Macs, I decided to 
 finally get clamav installed. Sadly, there's a bit of an error during 
 compilation.
 checking for gcc... /sw/lib/gcc4.4/bin/gcc
 checking whether the C compiler works... no
 configure: error: in `/sw/src/fink.build/clamav-0.96.1-11/clamav-0.96.1':
 configure: error: C compiler cannot create executables
 See `config.log' for more details.
 
 What does the config.log file say about this failure?
 
 
 The only thing that appears obviously relevant is the last line:
 configure: exit 77

Not exactly helpful (; The problem is, that %p/lib/gcc4.4/bin/gcc no longer 
exists in the updated gcc44 package. I will commit a fixed version of clamav 
later today.

Remi


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Re: [Fink-users] Failed: phase compiling: clamav-0.96.1-11 failed

[Remi Mommsen]

Hi,

On Jun 2, 2010, at 11:48 AM, Remi Mommsen wrote:

 Hi,
 
 On Jun 2, 2010, at 11:41 AM, Sean Lake wrote:
 
 
 On Jun 2, 2010, at 2:17, Martin Costabel wrote:
 
 Sean Lake wrote:
 Hello all,
 In the wake of news about some spyware spreading for Macs, I decided to 
 finally get clamav installed. Sadly, there's a bit of an error during 
 compilation.
 checking for gcc... /sw/lib/gcc4.4/bin/gcc
 checking whether the C compiler works... no
 configure: error: in `/sw/src/fink.build/clamav-0.96.1-11/clamav-0.96.1':
 configure: error: C compiler cannot create executables
 See `config.log' for more details.
 
 What does the config.log file say about this failure?
 
 
 The only thing that appears obviously relevant is the last line:
 configure: exit 77
 
 Not exactly helpful (; The problem is, that %p/lib/gcc4.4/bin/gcc no longer 
 exists in the updated gcc44 package. I will commit a fixed version of clamav 
 later today.

The new revisions for the clamav packages are on their way to the mirrors.

Remi

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Re: [Fink-users] Installing clamav-daemon gives ERROR: Please define server type (local and/or TCP).

[Remi Mommsen]

Hi Dominique,

On Apr 14, 2010, at 11:30 AM, Dominique Dhumieres wrote:

 When launching clamd I get the following error (all my systems):
 ERROR: Please define server type (local and/or TCP).
 
 What should I do?

You need to edit (with sudo) /sw/etc/clamd.conf to specify if clamd should use 
the local socket or listen on a network (TCP) socket. Look for 'LocalSocket'.

I will push a new revision of clamav which enables the LocalSocket by default.

Remi


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Re: [Fink-users] Installing clamav-daemon gives ERROR: Please define server type (local and/or TCP).

[Remi Mommsen]

Hi Dominique,

On Apr 14, 2010, at 4:33 PM, Dominique Dhumieres wrote:

 Remi,
 
 I will push a new revision of clamav which enables the LocalSocket by 
 default.
 
 Thanks for the revision. However on ppc (G4 10.4.11, G5 10.5.8) clamd crashes 
 with:
 
 Assertion failed: (ResultPtr = -(1  23)  ResultPtr  (1  23)  
 Relocation out of range!), function relocate, file 
 llvm/lib/Target/PowerPC/PPCJITInfo.cpp, line 399.

Unfortunately, I do not have a ppc machine available to test it. However, 
there's a bug report and patch at
https://wwws.clamav.net/bugzilla/show_bug.cgi?id=1921

I will upload another revision with this patch applied. Let me know if that 
fixes it.

Thanks,
Remi


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Re: [Fink-users] Failed: phase installing: geant4.9-cernlib-gfortran-4.9.2-23 failed

[Remi Mommsen]

Hi,

On Jan 26, 2010, at 12:08 AM, Hanspeter Niederstrasser wrote:

 Dominique Dhumieres wrote:
 On a G5 OSX 10.5, updating to geant4.9-cernlib-gfortran-4.9.2-23 failed with
 ...
 Libraries installation completed !
 
 # Your Geant4 installation seems to be successful!  # To be sure please have 
 a look into the log file:  # 
 /sw/src/fink.build/geant4.9-cernlib-gfortran-4.9.2-23/geant4.9.2.p02/.config/bin/Darwin-g++/g4make.log

 
 /bin/rm -rf /sw/src/fink.build/root-geant4.9-cernlib-gfortran-4.9.2-23
 ...
 /bin/chmod 644 
 /sw/src/fink.build/root-geant4.9-cernlib-gfortran-4.9.2-23/sw/lib/geant4.9/Darwin-g++/*.dylib
 /bin/chmod 644 
 /sw/src/fink.build/root-geant4.9-cernlib-gfortran-4.9.2-23/sw/lib/geant4.9/Darwin-g++/*.a
 if [[ '-cernlib-gfortran' == -cernlib* ]]; then
  /usr/bin/install -d -m 755 
 /sw/src/fink.build/root-geant4.9-cernlib-gfortran-4.9.2-23/sw/bin
  /bin/cp -PR bin/Darwin-g++/rztog4 
 /sw/src/fink.build/root-geant4.9-cernlib-gfortran-4.9.2-23/sw/bin/
 fi
 cp: bin/Darwin-g++/rztog4: No such file or directory
 ### execution of /var/tmp/tmp.3.quhI0C failed, exit code 1
 
 I get the same error for geant4.9-cernlib-gfortran on 10.5/i386 AND for 
 geant4.8-cernlib-gfortran on the same machine.  Build logs available on 
 request.

The bug has been fixed in cvs: the wrong quotes were used and prevented the 
correct replacement of the config in the patch file.

Thanks for the reports.

Remi


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Re: [Fink-users] Fink: Missing dependency in clamav-0.95.2-21 on libtool2-shlibs

[Remi Mommsen]

Hi Richard,

On Aug 2, 2009, at 4:59 PM, Richard Cobbe wrote:

 Fink 0.29.7; MacOS 10.5.7 i386; tracking unstable.

 I've just stumbled across what appears to be a missing dependency in
 clamav-0.95.2-21.  I did a fink selfupdate; fink update-all;  
 debfoster
 yesterday.  After the debfoster, running freshclam fails:

[perdita:~]$ sudo freshclam
Password:
dyld: Library not loaded: /sw/lib/libltdl.7.dylib
  Referenced from: /sw/bin/freshclam
  Reason: image not found
Trace/BPT trap

 After some digging, I discovered that the missing library is in  
 package
 libtool2-shlibs.  After installing this, freshclam runs successfully.

 (Maintainer CC'd.)

 Thanks,

 Richard

Thanks for pointing this out. I added the missing dependency to clamav  
(0.95.2-22).

Remi


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Re: [Fink-users] clamav mirrors.dat

[Remi Mommsen]

Hi Robert,

On Jul 3, 2009, at 8:48 PM, Robert Wyatt wrote:

 On 10.5 using the unstable tree and everything being current I've been
 getting a message in Terminal.app when I run freshclam:
 ERROR: Can't open mirrors.dat for writing

I guess you are running freshclam as your normal user. I would  
recommend to use 'sudo freshclam', i.e. use root.

 I compared permissions on
 -rw--- /sw/var/db/clamav/mirrors.dat
 -rw-rw-r-- /usr/local/clamXav/share/clamav/mirrors.dat

 and updated the fink version with:
 sudo chmod 644 /sw/var/db/clamav/mirrors.dat

I think that wont help, as the normal user still cannot write to it.  
(It should be chmod 664 if you want the same permissions.) However,  
allowing the group to write to the mirrors.dat is in principle a  
security risk. But it depends how paranoid you want to be...

Remi

 I think I have to wait until tomorrow to do another freshclam to see  
 if
 I get the same error. That is, I've tried freshclam again and do not  
 see
 the error, but then the database is not updated (because it already  
 was
 today) so I don't know if there is an attempt made to update  
 mirrors.dat.

 I suppose this is a note more than a question, but if you see a  
 problem
 with what I've done please let me know.

 --Robert


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Re: [Fink-users] clamd didn't act on SIGTERM

[Remi Mommsen]

Hi Claus,

On Apr 7, 2009, at 8:44 AM, Claus Atzenbeck wrote:


On Sun, 5 Apr 2009, Remi  Dona Mommsen wrote:

The problem is that the pid file was not handled consistently btw  
launch daemon and the clamd daemon. I believe that the latest  
revision -13 should fix it.


I updated clamav to revision -13. However, it still causes a delay  
on shutdown due to clamd not acting on SIGTERM.



Do you still have problems? I just committed a new (upstream) version  
and rebooted. I haven't seen any message concerning clamd.


Remi



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[Fink-users] Build failure cloog-0.15-1

[Remi Mommsen]

Hi,

I get a build failure when trying to compile cloog-0.15-1 (10.5.6/ 
intel, Xcode 3.1.2):



/bin/sh ./libtool --mode=link gcc -Wall -fomit-frame-pointer -g -O2  - 
L/sw/lib -L/sw/lib -o cloog  cloog.o libcloog.la -lgmp -lppl_c -lppl - 
lgmpxx
gcc -Wall -fomit-frame-pointer -g -O2 -o .libs/cloog cloog.o  -L/sw/ 
lib ./.libs/libcloog.dylib /sw/lib/libppl_c.dylib /sw/lib/libppl.dylib  
-lm /sw/lib/libgmpxx.dylib /sw/lib/libgmp.dylib

creating cloog
cd .  /bin/sh /sw.unstable/src/fink.build/cloog-0.15-1/cloog-ppl/ 
autoconf/missing --run autoheader

autoheader: warning: missing template: HAS_SYS_RESOURCE_H
autoheader: Use AC_DEFINE([HAS_SYS_RESOURCE_H], [], [Description])
make[1]: *** [include/cloog/cloog-config.h.in] Error 1
make: *** [all-recursive] Error 1
### execution of make failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-cloog-0.15-1
(Reading database ... 124079 files and directories currently installed.)
Removing fink-buildlock-cloog-0.15-1 ...
Failed: phase compiling: cloog-0.15-1 failed

Before reporting any errors, please run fink selfupdate and
try again.  If you continue to have issues, please check to see if the
FAQ on fink's website solves the problem.  If not, ask on the fink-users
or fink-beginners mailing lists, with a carbon copy to the maintainer:

Jack Howarth howa...@bromo.med.uc.edu

Note that this is preferable to emailing the maintainer directly, since
most fink package maintainers do not have access to all possible
hardware and software configurations.





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Re: [Fink-users] file-4.24-1

[Remi Mommsen]

Hi Peter,

On Nov 14, 2008, at 5:54 AM, Peter Stirling wrote:

 Hi,
   
 I'm trying to install apache2, and I'm blocked because I can't build
 file-4.24-1, which it depends on.

 The problem arises because 4.24 is no longer hosted on any of the
 mirrors (the current version appears
 to be 4.26 and 4.25 is the legacy version).

 I tried making a trivial version bump of the file.info and putting it
 in my local tree, but I get a link
 error. Specifically:

 /bin/sh ../libtool --tag=CC   --mode=link gcc -Wall -Wstrict-
 prototypes -Wmissing-prototypes -Wpointer-arith-Wmissing-
 declarations -Wredundant-decls -Wnested-externs-Wsign- 
 compare -
 Wreturn-type -Wswitch -Wshadow-Wcast-qual -Wwrite-strings -
 Wextra -Wunused-parameter -g -O2 -no-undefined -version-info 1:0:0 -L/
 sw/lib -o libmagic.la -rpath /sw/lib magic.lo apprentice.lo
 softmagic.lo ascmagic.lo compress.lo is_tar.lo readelf.lo print.lo
 fsmagic.lo funcs.lo apptype.lo  -lz
 gcc -dynamiclib  -o .libs/libmagic.1.0.0.dylib  .libs/magic.o .libs/
 apprentice.o .libs/softmagic.o .libs/ascmagic.o .libs/ 
 compress.o .libs/
 is_tar.o .libs/readelf.o .libs/print.o .libs/fsmagic.o .libs/
 funcs.o .libs/apptype.o  -L/sw/lib -lz  -install_name  /sw/lib/
 libmagic.1.dylib -Wl,-compatibility_version -Wl,2 -Wl,-current_version
 -Wl,2.0
 ld: duplicate symbol _li in .libs/apprentice.o and .libs/magic.o

 A look at the mailing list at http://mx.gw.com/pipermail/file/2008/thread.html
  lead to

 http://mx.gw.com/pipermail/file/2008/000259.html which gives a patch
 that claimed to work (for the macports people)



Thanks for pointing this out. A new version of file for fink is on its  
way to the mirrors (10.4/unstable).

Remi





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[Fink-users] Check failure in check-0.9.5-1

[Remi Mommsen]

Hi,

I try to compile the check package on 10.5.4 and 10.4.11 with gcc  
4.0.1. In both cases the 'make check-TESTS' fails:

[SNIP]

Making check in tests
make  check-TESTS
Running suite(s): Fork Sub
100%: Checks: 3, Failures: 0, Errors: 0
check_check_fork.c:17:P:Core:test_inc:0: Passed
check_check_fork.c:26:P:Core:test_nofork_sideeffects:0: Passed
check_check_fork.c:33:P:Core:test_nofork_pid:0: Passed
Running suite(s): Fix Sub
0%: Checks: 0, Failures: 1, Errors: 0
check_check_fixture.c:14:S:Fix Sub:unchecked_setup:0: Test failure in  
fixture
Running suite(s): Check Servant
Running suite(s):100%: Checks: 0, Failures: 0, Errors: 0
  Check Servant2
23%: Checks: 47, Failures: 19, Errors: 17

[SNIP]

FAIL: check_check
PASS: test_output.sh
PASS: test_xml_output.sh
PASS: test_log_output.sh
==
1 of 4 tests failed
Please report to [EMAIL PROTECTED]
==
make[2]: *** [check-TESTS] Error 1
make[1]: *** [check-am] Error 2
make: *** [check-recursive] Error 1
### execution of make failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-check-0.9.5-1
(Reading database ... 61594 files and directories currently installed.)
Removing fink-buildlock-check-0.9.5-1 ...
Failed: phase compiling: check-0.9.5-1 failed


The full log file from 10.5.4 can be found at
http://cern.ch/mommsen/fink/check_0.9.5-1.log


Cheers,
Remi


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Re: [Fink-users] cernlib won't install on my new MacBook Air

[Remi Mommsen]

Hi Jess,

On Jun 12, 2008, at 8:55 PM, Jess H. Brewer wrote:

 I just discovered what might be the problem:
 _
 making Makefiles in /patchy...
 cd /sw/src/fink.build/cernlib2005-gfortran-2005-2012/2005/src/ 
 cernlib/2005/bin/;\
if [ -f ../../patchy/4.15/bin/ycompar ] ; then \
ln -s ../../patchy/4.15/bin/ycompar ycompar; \
else  \
echo ycompar not linked, not existing;\
fi
 ycompar not linked, not existing

I guess that's the root cause of your problem. ycompar should be  
installed by patchy4-gfortran under /sw/bin. Do you have this file?

Otherwise, try to rebuild patchy4-gfortran. Can you send me (off-list)  
the build log of it?

Thanks, 
Remi


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[Fink-users] Compilation failure for libftgl1-2.1.2-1 (10.4/unstable)

[Remi Mommsen]

Hi,

I try to compile libftgl1 on 10.5/i386 (from the 10.4/unstable  
branch). It fails with the following error message:

rm -f .libs/FTVectoriser.lo
g++ -c -I../../include -I/sw/include -g -O2 -I/usr/X11/include/ 
freetype2 -I/usr/X11/include ../../src/FTVectoriser.cpp  -fno-common - 
DPIC -o .libs/FTVectoriser.lo
../../src/FTVectoriser.cpp: In member function 'void  
FTVectoriser::MakeMesh(FTGL_DOUBLE)':
../../src/FTVectoriser.cpp:186: error: invalid conversion from 'GLvoid  
(*)(...)' to 'GLvoid (*)()'
../../src/FTVectoriser.cpp:186: error:   initializing argument 3 of  
'void gluTessCallback(GLUtesselator*, GLenum, GLvoid (*)())'
../../src/FTVectoriser.cpp:187: error: invalid conversion from 'GLvoid  
(*)(...)' to 'GLvoid (*)()'
../../src/FTVectoriser.cpp:187: error:   initializing argument 3 of  
'void gluTessCallback(GLUtesselator*, GLenum, GLvoid (*)())'
../../src/FTVectoriser.cpp:188: error: invalid conversion from 'GLvoid  
(*)(...)' to 'GLvoid (*)()'
../../src/FTVectoriser.cpp:188: error:   initializing argument 3 of  
'void gluTessCallback(GLUtesselator*, GLenum, GLvoid (*)())'
../../src/FTVectoriser.cpp:189: error: invalid conversion from 'GLvoid  
(*)(...)' to 'GLvoid (*)()'
../../src/FTVectoriser.cpp:189: error:   initializing argument 3 of  
'void gluTessCallback(GLUtesselator*, GLenum, GLvoid (*)())'
../../src/FTVectoriser.cpp:190: error: invalid conversion from 'GLvoid  
(*)(...)' to 'GLvoid (*)()'
../../src/FTVectoriser.cpp:190: error:   initializing argument 3 of  
'void gluTessCallback(GLUtesselator*, GLenum, GLvoid (*)())'
make[1]: *** [FTVectoriser.lo] Error 1
g++ -g -O2 -I../../include -I/sw/include -I/usr/X11/include/freetype2 - 
I/usr/X11/include -I../../src  -c -o FTGLDemo.o ../../demo/FTGLDemo.cpp
gcc -g -O2 -I../../include -I/sw/include -I/usr/X11/include/freetype2 - 
I/usr/X11/include -I../../src  -c -o tb.o ../../demo/tb.c
gcc -g -O2 -I../../include -I/sw/include -I/usr/X11/include/freetype2 - 
I/usr/X11/include -I../../src  -c -o trackball.o ../../demo/trackball.c
/bin/sh ../libtool --mode=link g++ FTGLDemo.o tb.o trackball.o -o  
FTGLDemo ../src/libftgl.la   -L/usr/X11/lib -lfreetype -lz -Wl,- 
framework,CoreServices,-framework,ApplicationServices -Wl,- 
framework,GLUT -Wl,-framework,OpenGL -lobjc
mkdir .libs
libtool: link: cannot find the library `../src/libftgl.la'
make[1]: *** [FTGLDemo] Error 1


I'm using the Apple g++ compiler:
g++ --version
i686-apple-darwin9-g++-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465)


Any idea why it does not work?

Remi




--
… there are known knowns;  there are things we know we know.  We also
know there are known unknowns;  that is to say we know there are some
things we do not know. But there are also unknown unknowns — the ones
we don’t know we don’t know.
   Donald Rumsfeld
*
Remigius K. Mommsen e-mail:  [EMAIL PROTECTED]
Fermilab   URL:http://cern.ch/mommsen
CERN 40 2-B06voice:   +41 22 767 1621
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*





--
Q: How many kinds of physicists are there?
A: Three. Those who can count and those who can't.

*
Remigius K. Mommsen e-mail:  [EMAIL PROTECTED]
Fermilab   URL:http://cern.ch/mommsen
CERN 40 2-B06voice:   +41 22 767 1621
CH-1211 Genève 23   mobile:   +41 76 487 2535
Switzerlandfax:   +41 22 767 8940
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Re: [Fink-users] Failed: phase compiling: clamav-0.92.1-52 failed

[Remi Mommsen]

Hi,

On May 2, 2008, at 4:06 AM, Stan Sanderson wrote:

 On May 1, 2008, at 8:38 PM, Alexander Hansen wrote:


 On May 1, 2008, at 8:04 PM, Stan Sanderson wrote:


 On May 1, 2008, at 12:48 PM, Dominique Dhumieres wrote:

 On ppc (G4) OSX 10.4.11 updating to clamav-0.92.1-52 failed with:

 ...
 /sw/lib/gcc4.3/bin/gcc -dynamiclib  -o .libs/libclamunrar.
 3.0.4.dylib  .libs/unrar15.o .libs/unrar.o .libs/unrar20.o .libs/
 unrarppm.o .libs/unrarvm.o .libs/unrarcmd.o .libs/
 unrarfilter.o .libs/unrarhlp.o  -L/sw/lib  -install_name  /sw/lib/
 libclamunrar.3.dylib -Wl,-compatibility_version -Wl,4 -Wl,-
 current_version -Wl,4.4
 /usr/bin/ld: unknown flag: -compatibility_version
 collect2: ld a retourné 1 code d'état d'exécution
 make[2]: *** [libclamunrar.la] Error 1
 make[1]: *** [all-recursive] Error 1
 make: *** [all] Error 2
 ### execution of /var/tmp/tmp.1.GiSEgx failed, exit code 2
 Removing runtime build-lock...
 Removing build-lock package...
 /sw/bin/dpkg-lockwait -r fink-buildlock-clamav-0.92.1-52
 (Reading database ... 360004 files and directories currently
 installed.)
 Removing fink-buildlock-clamav-0.92.1-52 ...
 Failed: phase compiling: clamav-0.92.1-52 failed

 Note that the update went fine on ppc/intel OSX 10.5.2.


 I'm currently attempting an update of clamav, also on OS 10.4.11  
 PPC;
 it has been running nearly six hours now (on a 1.67 MHz G4
 PowerBook). This seems unusual for a clamav update!

 Stan



 Is that clamav by itself, or building a gcc package to build it?


 It appears to be the latter. After approximately 7.5 hrs, clamav
 apparently built. However, clamav3-shlibs failed. Following Jean-
 François's lead, I fink listed clamav and found:

  i   clamav  0.93-51
  clamav-daemon   0.93-51
  clamav-dev  0.88.7-54
  i   clamav-shlibs   0.88.7-54
  clamav2-dev 0.91.2-52
  i   clamav2-shlibs  0.91.2-52
  clamav3-dev 0.92.1-52
 (i)  clamav3-shlibs  0.92.1-52
  clamav4-dev 0.93-51
  i   clamav4-shlibs  0.93-51

 I don't quite understand why multiple copies of clamav were allowed
 to build. I have fink removed all but the 0.93.51 versions.

 Thanks for the comments and insights.

Sorry for the troubles. I don't have the possibility to test on ppc  
right now. I will revert clamav 0.92.1 back to use gcc42, but leave  
the latest clamav (0.93) with gcc43.

The reason to have several version is that the shlibs major version  
change from each new major release to the next. Therefore, the old  
shlibs (and the corresponding dev packages) remain for compatibility  
reasons. You can remove those if you wish (hint: debfoster can take  
care of cleaning out unused libraries).

Remi



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Re: [Fink-users] cernlib won't install on my new MacBook Air

[Remi Mommsen]

Hi Jess,

sorry for the late reply. I was quite busy and traveling during the  
last months.

On Apr 11, 2008, at 9:31 PM, Jess H. Brewer wrote:
 I have a brand new MacBook Air with Intel CPU, into which I've been
 loading up all my favorite linux tools from fink.  I do a lot of
 data analysis using cernlib components (particularly minuit) and
 so, once I got fink set up (stable and unstable) and ran both
 # fink selfupdateand # fink update-all,
 I tried (several times) # fink install cernlib .  It built stuff
 for an hour or so and terminated each time with a huge slew of
 can't find atom for N_GSYM stabs... messages, ending with the
 errors shown below (in admittedly excessive detail).  I have tried
 to find some reference to similar problems in FAQ to no avail, and
 fink-beginners doesn't seem appropriate for this, so I'm appealing
 to wiser heads.  I apologize for any gaffes or breahes of protocol
 or etiquette; please instruct me!  -- Jess Brewer

 PS: I did successfully install pyminuit, so the problem is specific
 to the fortran cernlib.
 __
 .
 .
 .
 can't find atom for N_GSYM stabs iqceta:G(0,6) in /sw/src/fink.build/ 
 cernlib2005-gfortran-2005-2011/2005/src/cernlib/2005/lib/ 
 libpacklib.a(izchav.o)
 can't find atom for N_GSYM stabs zkrakc:G(0,8)=u1288cqholk: 
 (0,9)[EMAIL PROTECTED];ar(0,4);1;120;(0,10)[EMAIL 
 PROTECTED];r(0,10);0;255;,0,960;iqholk: 
 (0,11)=ar(0,4);0;119;(0,4),0,3840;iqkrak:(0,12)=ar(0,4);0;79;(0,4), 
 3840,2560;iqcetk:(0,13)=ar(0,4);0;121;(0,4),6400,3904;; in /sw/src/ 
 fink.build/cernlib2005-gfortran-2005-2011/2005/src/cernlib/2005/lib/ 
 libpacklib.a(izchav.o)
 can't find atom for N_GSYM stabs cqholk:G(0,9) in /sw/src/fink.build/ 
 cernlib2005-gfortran-2005-2011/2005/src/cernlib/2005/lib/ 
 libpacklib.a(izchav.o)
 can't find atom for N_GSYM stabs iqholk:G(0,11) in /sw/src/ 
 fink.build/cernlib2005-gfortran-2005-2011/2005/src/cernlib/2005/lib/ 
 libpacklib.a(izchav.o)
 rm -f /sw/src/fink.build/cernlib2005-gfortran-2005-2011/2005/src/ 
 cernlib/2005/bin/paw++
 install -c   paw++ /sw/src/fink.build/cernlib2005- 
 gfortran-2005-2011/2005/src/cernlib/2005/bin/paw++
 if [[ i386 == i386  gfortran == gfortran ]] ; then
  make patchy/Makefile
  (cd patchy; make install.bin) || exit 1
 fi
 making Makefiles in /patchy...
 cd /sw/src/fink.build/cernlib2005-gfortran-2005-2011/2005/src/ 
 cernlib/2005/bin/;\
if [ -f ../../patchy/4.15/bin/ycompar ] ; then \
ln -s ../../patchy/4.15/bin/ycompar ycompar; \
else  \
echo ycompar not linked, not existing;\
fi
 ycompar not linked, not existing
 cd /sw/src/fink.build/cernlib2005-gfortran-2005-2011/2005/src/ 
 cernlib/2005/bin/;\
if [ -f ../../patchy/4.15/bin/yedit ] ; then \
ln -s ../../patchy/4.15/bin/yedit yedit; \
else  \
echo yedit not linked, not existing;\
fi
 yedit not linked, not existing
 cd /sw/src/fink.build/cernlib2005-gfortran-2005-2011/2005/src/ 
 cernlib/2005/bin/;\
if [ -f ../../patchy/4.15/bin/yfrceta ] ; then \
ln -s ../../patchy/4.15/bin/yfrceta yfrceta; \
else  \
echo yfrceta not linked, not existing;\
fi
 yfrceta not linked, not existing
 cd /sw/src/fink.build/cernlib2005-gfortran-2005-2011/2005/src/ 
 cernlib/2005/bin/;\
if [ -f ../../patchy/4.15/bin/yindex ] ; then \
ln -s ../../patchy/4.15/bin/yindex yindex; \
else  \
echo yindex not linked, not existing;\
fi
 yindex not linked, not existing
 cd /sw/src/fink.build/cernlib2005-gfortran-2005-2011/2005/src/ 
 cernlib/2005/bin/;\
if [ -f ../../patchy/4.15/bin/ylist ] ; then \
ln -s ../../patchy/4.15/bin/ylist ylist; \
else  \
echo ylist not linked, not existing;\
fi
 ylist not linked, not existing
 cd /sw/src/fink.build/cernlib2005-gfortran-2005-2011/2005/src/ 
 cernlib/2005/bin/;\
if [ -f ../../patchy/4.15/bin/ypatchy ] ; then \
ln -s ../../patchy/4.15/bin/ypatchy ypatchy; \
else  \
echo ypatchy not linked, not existing;\
fi
 ypatchy not linked, not existing
 cd /sw/src/fink.build/cernlib2005-gfortran-2005-2011/2005/src/ 
 cernlib/2005/bin/;\
if [ -f ../../patchy/4.15/bin/ysearch ] ; then \
ln -s ../../patchy/4.15/bin/ysearch ysearch; \
else  \
echo ysearch not linked, not existing;\
fi
 ysearch not linked, not existing
 cd /sw/src/fink.build/cernlib2005-gfortran-2005-2011/2005/src/ 
 cernlib/2005/bin/;\
if [ -f ../../patchy/4.15/bin/yshift ] ; then \
ln -s ../../patchy/4.15/bin/yshift yshift; \
else  \
echo yshift not linked, not existing;\
fi
 yshift not linked, not existing
 cd 

Re: [Fink-users] ROOT5 installation

[Remi Mommsen]

Hi,

On May 15, 2007, at 7:27 AM, Alexander K. Hansen wrote:

 Alexander Hansen wrote:
 On 5/14/07, Chipper [EMAIL PROTECTED] wrote:

 Hi
 I'm trying to install ROOT5 on my power mac (intel, 4 core). I have
 previously installed it on my macbook pro (2 core intel) with no  
 problem, so
 I'm confused. I have installed the most recent dev-tools and used  
 the  cvs
 fink update and install. It downloaded and ran for a long time  
 before giving
 up at:

 bin/rmkdepend -R -ffitpanel/src/G__FitPanel.d -Y -w 1000 -- \
-pipe -W -Wall -Wno-long-double -Woverloaded-virtual -fsigned- 
 char
 -fno-common -Iinclude -DR__HAVE_CONFIG   -D__cplusplus -Icint/lib/ 
 prec_stl \
-Icint/stl -- fitpanel/src/G__FitPanel.cxx
 g++  -pipe -W -Wall -Wno-long-double -Woverloaded-virtual - 
 fsigned-char
 -fno-common -Iinclude -DR__HAVE_CONFIG   -I. -o fitpanel/src/ 
 G__FitPanel.o
 -c fitpanel/src/G__FitPanel.cxx
 g++ -O2 -dynamiclib -single_module -undefined dynamic_lookup - 
 install_name
 /sw/lib/root/libFitPanel.5.dylib -o lib/libFitPanel.5.14.dylib
 fitpanel/src/TFitEditor.o fitpanel/src/TFitParametersDialog.o
 fitpanel/src/G__FitPanel.o -ldl -Llib -lGui -lGpad -lHist -lGraf - 
 lTree
 -lMatrix -Llib -lCore -lCint -compatibility_version 5 - 
 current_version
 5.14.00
 ln -fs libFitPanel.5.14.dylib lib/libFitPanel.so
 == lib/libFitPanel.5.14.dylib done
 bin/rmkdepend -R -fx11/src/GX11Gui.d -Y -w 1000 -- -pipe -W -Wall
 -Wno-long-double -Woverloaded-virtual -fsigned-char -fno-common - 
 Iinclude
 -DR__HAVE_CONFIG   -D__cplusplus -- x11/src/GX11Gui.cxx
 g++ -O2 -pipe -W -Wall -Wno-long-double -Woverloaded-virtual - 
 fsigned-char
 -fno-common -Iinclude -DR__HAVE_CONFIG   -DUSEPCH -include  
 precompile.h -o
 x11/src/GX11Gui.o -c x11/src/GX11Gui.cxx
 In file included from x11/src/GX11Gui.cxx:32:
 include/TGX11.h:31:22: error: X11/Xlib.h: No such file or directory


 snip


 any ideas?

 thanks,
 Ray Brock



 Yeah.  What X11 distribution are you using?  If you're using Fink's
 xfree86 or xorg then then there's kind of a standard failure among
 Tk-based packages that affects those distros.


 maintainer cc'ed

 I get the same failure mode on a system with xorg.
 I have found that Tk applications frequently need
 SetCFLAGS: -I/usr/X11R6/include

 to find the headers on systems that aren't using Apple's X11.

I just committed a fix for root5 and root5-devel to the unstable tree  
which should allow the build to proceed if the symlink from /usr/ 
include/X11 to /usr/X11R6/include does not exist. The fix was a bit  
more complicated than indicated by Alexander, as root does not care  
about these standard flags, unfortunately.

Remi


--
Intelligence is like a four-wheel drive vehicle: it allows you to get
stuck in much more remote places.

*
Remigius K. Mommsen e-mail:  [EMAIL PROTECTED]
University of Manchester   URL:http://cern.ch/mommsen
Fermilab, MS 357 voice:++1 (630) 840-8321
P.O. Box 500   fax:++1 (630) 840-2649
Batavia, Il 60510, US home:++1 (630) 236-0932
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Re: [Fink-users] CERNLIB 2005 available on MacIntel from Fink

[Remi Mommsen]

Hi Adam,

sorry for the late reply.

On Feb 15, 2007, at 12:49 PM, Adam Kocoloski wrote:

 Hi Remi,

 Thanks so much for putting this together.  It's great to be able to  
 deploy consistent sets of ROOT-CERNLIB-GEANT libraries across both  
 architectures.

 I've built this package successfully on a MBP running 10.4.8 and a  
 G5 running 10.4.8 server (gfortran option).  However, one of my  
 colleagues has encountered errors linking h2root on a PowerBook  
 running 10.4.8.  The offending command is

 g++ -O2 -bind_at_load -o bin/h2root main/src/h2root.o hbook/src/ 
 hntvar2.o \
  -Llib -lCore -lCint -lHist -lGraf -lGraf3d -lGpad -lTree - 
 lMatrix \
  -L/sw/./lib -L/sw/./lib -lpacklib -lkernlib  \
   -L/sw/lib/gcc4/lib -lgfortran -lgfortranbegin -L/sw/lib -lg2c - 
 lm-lpthread -ldl
 /usr/bin/ld: Undefined symbols:
 _inflate
 _inflateEnd
 _inflateInit2_
 _inflateReset
 collect2: ld returned 1 exit status
 make: *** [bin/h2root] Error 1

 I'm a little confused by this error, since my copies of h2root have  
 no inflate symbols in them.  I tried a dirty hack by adding -lz to  
 the link command.  This succeeded, but then Fink blew it away when  
 we did fink install root5-cernlib-geant4 again.  Any thoughts?   
 He's tried a fresh rebuild of Fink at least once.  Thanks,

I don't know why these symbols show up. However, the link line looks  
not as I would expect it. I just committed a fix trying to make the  
creation of this line a bit more reliable (at least I hope so).  
Anyway, could you (or your colleague) try again and see if it works now?

Remi

--
Q: How many kinds of physicists are there?
A: Three. Those who can count and those who can't.

*
Remigius K. Mommsen e-mail:  [EMAIL PROTECTED]
University of Manchester   URL:http://cern.ch/mommsen
Fermilab, MS 357 voice:++1 (630) 840-8321
P.O. Box 500   fax:++1 (630) 840-2649
Batavia, Il 60510, US home:++1 (630) 236-0932
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Re: [Fink-users] root5-cernlib-shlibs-5.14.00b-1152

[Remi Mommsen]

Hi Robert


On Feb 5, 2007, at 11:11 AM, Robert T Wyatt wrote:

 (Posted to list and to maintainer)

 I'm not sure, but it looks to me like this directory is trying to  
 be renamed immediately after being renamed. I'll be glad to try any  
 suggestions. (10.4-unstable tree)

 /usr/bin/install -d -m 755 /sw/src/fink.build/root-root5-cernlib- 
 shlibs-5.14.00b-1152/sw/lib/root
 /bin/mv /sw/src/fink.build/root-root5-cernlib-5.14.00b-1152/sw/lib/ 
 root/libASImage.5.14.dylib /sw/src/fink.build/root-root5-cernlib- 
 shlibs-5.14.00b-1152/sw/lib/root/
 snip
 /bin/mv /sw/src/fink.build/root-root5-cernlib-5.14.00b-1152/sw/lib/ 
 root/libEG.5.dylib /sw/src/fink.build/root-root5-cernlib- 
 shlibs-5.14.00b-1152/sw/lib/root/
 /bin/mv /sw/src/fink.build/root-root5-cernlib-5.14.00b-1152/sw/lib/ 
 root/libEGPythia6.5.14.dylib /sw/src/fink.build/root-root5-cernlib- 
 shlibs-5.14.00b-1152/sw/lib/root/
 mv: rename /sw/src/fink.build/root-root5-cernlib-5.14.00b-1152/sw/ 
 lib/root/libEGPythia6.5.14.dylib to /sw/src/fink.build/root-root5- 
 cernlib-shlibs-5.14.00b-1152/sw/lib/root/libEGPythia6.5.14.dylib:  
 No such file or directory
 ### execution of /bin/mv failed, exit code 1
 Removing runtime build-lock...
 Removing build-lock package...
 /sw/bin/dpkg-lockwait -r fink-buildlock-root5-cernlib-5.14.00b-1152
 (Reading database ... 449278 files and directories currently  
 installed.)
 Removing fink-buildlock-root5-cernlib-5.14.00b-1152 ...
 Failed: phase installing: root5-cernlib-shlibs-5.14.00b-1152 failed

 The complete output is available here: http://reg066.reg.utexas.edu/ 
 ~rgrtw-05/fink/root5-cernlib-shlibs-5.14.00b-1152-1.txt

The mv command fails because the file didn't get built. I'm not sure  
why you claiming renamed immediately after being renamed.

Looking at the complete output (thanks for the detailed  
information!), I see that in your case the configure of libPythia6  
shows:

Checking for libPythia6 ... /sw/lib/root
Checking for pythia6_common_block_address__ in /sw/lib/root/ 
libPythia6.a ... no
Checking for pythia6_common_block_address_ in /sw/lib/root/ 
libPythia6.a ... no
Checking for pythia6_common_address in /sw/lib/root/libPythia6.a ... no
  didn't find pythia6_common_block_address[_]* in -lPythia6
Checking for intel_cpu_indicator in /sw/lib/root/libPythia6.a ... no


while in my case it looks like:

Checking for libPythia6 ... /sw/lib/root
Checking for pythia6_common_block_address__ in /sw/lib/root/ 
libPythia6.so ... no
Checking for pythia6_common_block_address_ in /sw/lib/root/ 
libPythia6.so ... no
Checking for pythia6_common_address in /sw/lib/root/libPythia6.so ... ok
Checking for intel_cpu_indicator in /sw/lib/root/libPythia6.so ... no


I don't know why in your case there's no  
pythia6_common_block_address. Can you try to rebuild the root-pythia  
package saving the log output?

Do you use the latest XCode version?


Remi


--
… there are known knowns;  there are things we know we know.  We also
know there are known unknowns;  that is to say we know there are some
things we do not know. But there are also unknown unknowns — the ones
we don’t know we don’t know.
   Donald Rumsfeld
*
Remigius K. Mommsen e-mail:  [EMAIL PROTECTED]
University of Manchester   URL:http://cern.ch/mommsen
Fermilab, MS 357 voice:++1 (630) 840-8321
P.O. Box 500   fax:++1 (630) 840-2649
Batavia, Il 60510, US home:++1 (630) 236-0932
*




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[Fink-users] CERNLIB 2005 available on MacIntel from Fink

[Remi Mommsen]

Hi,

Many of you inquired about the possibility to get CERNLIB (including  
PAW) for MacIntel. Given that the CERNLIB makes extensive use of g77  
features, CERNLIB did not compile properly for a long time using the  
Fortran compilers available on MacIntel.

Thanks to the hard work of Jack Howarth and Jean-François Mertens,  
this changed during the last weeks. The gfortran compiler from recent  
GCC 4.2 snapshots does compile the CERNLIB correctly, i.e. all tests  
of the CERNLIB test suite succeed. Since today, gcc42 and cernlib2005  
are available (*) through fink (http://fink.sourceforge.net/). The  
patches required to make CERNLIB work on Mac (both on intel and ppc)  
are to a large extend based on work of Keisuke Fujii and Harald Vogt.

Note that the CERNLIB package name changed from cernlib2005 to  
cernlib2005-g77 and cernlib2005-gfortran. The former is only  
available for ppc.

I'm looking forward to get feedback from you.

Enjoy,
Remi



(*) You have to enable the unstable branch (http:// 
www.finkproject.org/faq/usage-fink.php#unstable) to get access to them.


--
Truth decays into beauty, while beauty soon becomes merely charm.
Charm ends up as strangeness, and even that doesn't last, but up and
down are forever. (Anonymous)

*
Remigius K. Mommsen e-mail:  [EMAIL PROTECTED]
University of Manchester   URL:http://cern.ch/mommsen
Fermilab, MS 357 voice:++1 (630) 840-8321
P.O. Box 500   fax:++1 (630) 840-2649
Batavia, Il 60510, US home:++1 (630) 236-0932
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Re: [Fink-users] libpacklib.a from cernlib2005 Fink package is missing fzicv symbol

[Remi Mommsen]

Hi Adam,

On Jan 10, 2007, at 5:26 PM, Adam Kocoloski wrote:

 Hi Fink-users and Remi,

 I'd like to use Fink to install libraries necessary for building  
 the STAR software stack on OS X.  A few of the STAR simulation  
 codes call the FZICV Fortran subroutine defined in packlib/zebra/ 
 fq.  However, I can't seem to find this symbol in the libpacklib.a  
 produced by Fink.  Is there perhaps some reason why Fink chose to  
 skip compiling that particular code?  Everything else seems to have  
 worked fine.  Regards,

After some poking around, I found out that FZICV subroutine is used  
to convert little endian to big endian data. The latter is the  
CERNLIB default for the internal data handling. As the PPC platform  
is big endian (in contrast to the i386), this routine is not  
compiled. I guess you could just define a dummy routine to satisfy  
the linker. However, you might need to look into the big endian vs  
little endian issue more carefully.

Remi


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Re: [Fink-users] [fink-core] debfoster missing some necessary fink packages?

[Remi Mommsen]

Hi,

I had to delete the old fink-prebinding deb from apt's archive and  
run 'apt-cache gencaches' to get rid of the essential flag in apt- 
cache. Thus, somehow apt sticks to the essential flag when it is  
present in any deb, not necessarily in the newest one.

Remi

On Dec 7, 2006, at 8:29 AM, David R. Morrison wrote:

 Ah, so maybe the solution is to push binaries of the no-longer- 
 essential packages into the bindist?  (In current)?

 (We *do* use current, for the small handful of packages which get  
 updated or added in between bindist releases.)

   -- Dave


 On Dec 7, 2006, at 4:18 AM, Chris Zubrzycki wrote:

 -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA1


 On Dec 6, 2006, at 11:45 PM, David R. Morrison wrote:

 Hi Remi.

 Chris Z. and I just looked at this again.  The property Essential
 does not even make it into the .deb.  We're guessing that your
 installation is still picking up the info from some old version of
 the file.  Try running apt-get update to see if that makes it go
 away?  (The old info must be cached somehow...)

 It is in deb http://bindist.finkmirrors.net/bindist 10.4/release main
 crypto

 Speaking of that, there is no need for release and current. Just
 merge the 2, makes it much easier and 4 less lines in the sources
 file. :)

 - -chris zubrzycki
 - - --
 PGP public key: http://homepage.mac.com/beren/publickey.txt
 ID: 0xA2ABC070
 Fingerprint: 26B0 BA6B A409 FA83 42B3  1688 FBF9 8232 A2AB C070
 

 Unix  _IS_  user friendly... It's just selective about who its
 friends are.


 -BEGIN PGP SIGNATURE-
 Version: GnuPG v1.4.5 (Darwin)
 Comment: Please sign reply-http://www.gnupg.org

 iEYEARECAAYFAkV4BoYACgkQ+/mCMqKrwHAwTQCgyWFRNchbTGAKOmUGR0gqCQs1
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 =PxyH
 -END PGP SIGNATURE-

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Re: [Fink-users] [fink-core] debfoster missing some necessary fink packages?

[Remi Mommsen]

Hi Dave,

I rebuilt the fink-prebinding package yesterday to make sure that I  
have the latest deb corresponding to the info file. But apt still  
complains. I believe the pure presence of the word 'Essential' is  
enough for apt to treat it as essential. Maybe we should remove the  
Essential: no from the info files?

Remi

On Dec 6, 2006, at 8:14 AM, David R. Morrison wrote:

 It is true, however, that cctools-extra, fink-prebinding, and  
 ncurses-shlibs used to be Essential: yes (in the 10.4- 
 transitional tree, for example) but are now Essential: no.  It's  
 possible that the warning was accurate, because the user had old  
 versions of those packages installed which were indeed tagged as  
 essential.

   -- Dave

 On Dec 5, 2006, at 10:03 PM, Remi Mommsen wrote:

 [cc'ing fink-core, as this is the maintainer for apt.]

 Hi,

 I finally found some time to look into this issue:

 On Nov 5, 2006, at 12:06 PM, Alexander Hansen wrote:

 On 11/5/06, Shug Boabby [EMAIL PROTECTED] wrote:
 This is what happens if I remove these packages from my keepers  
 list,
 and run debfoster with n for them:-

 =
 $sudo debfoster

 fink-prebinding is keeping the following 1 packages installed:
   cctools-extra
 Keep fink-prebinding? [Ynpsiuqx?], [H]elp: N
 Keep cctools-extra? [Ynpsiuqx?], [H]elp: N
 Keep ncurses-shlibs? [Ynpsiuqx?], [H]elp: N
 Keep system-openssl-dev? [Ynpsiuqx?], [H]elp: N
 Reading Package Lists... Done
 Building Dependency Tree... Done
 The following packages will be REMOVED:
   cctools-extra* fink-prebinding* ncurses-shlibs* system-openssl- 
 dev*
 WARNING: The following essential packages will be removed
 This should NOT be done unless you know exactly what you are doing!
   cctools-extra fink-prebinding ncurses-shlibs
 0 packages upgraded, 0 newly installed, 4 to remove and 0  not
 upgraded.
 Need to get 0B of archives. After unpacking 2732kB will be freed.
 You are about to do something potentially harmful
 To continue type in the phrase 'Yes, do as I say!'
  ?]
 =

 So are you *sure* it's ok to remove these programs?


 As Martin said, they're all marked as Essential: no, so they're  
 not
 essential for Fink.  debfoster apparently just sees the presence of
 the Essential field as marking a package as essential, rather than
 whether the field is set to yes

 After some testing and reading code, I believe that debfoster is
 handling the Essential field correctly. However, apt does not. The
 prompt
 You are about to do something potentially harmful
 To continue type in the phrase 'Yes, do as I say!'

 does come from apt being told by debfoster to remove packages which
 have Essential: no set. 'apt-cache show fink-prebinding' actually
 report Essential: yes, while the info file clearly says Essential:
 no. I haven't found out where apt gets it wrong.

 Remi

 --
 Fashion is a form of ugliness so intolerable that we have to alter it
 every six months.   (Oscar Wilde)

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Re: [Fink-users] debfoster missing some necessary fink packages?

[Remi Mommsen]

[cc'ing fink-core, as this is the maintainer for apt.]

Hi,

I finally found some time to look into this issue:

On Nov 5, 2006, at 12:06 PM, Alexander Hansen wrote:

 On 11/5/06, Shug Boabby [EMAIL PROTECTED] wrote:
 This is what happens if I remove these packages from my keepers list,
 and run debfoster with n for them:-

 =
 $sudo debfoster

 fink-prebinding is keeping the following 1 packages installed:
   cctools-extra
 Keep fink-prebinding? [Ynpsiuqx?], [H]elp: N
 Keep cctools-extra? [Ynpsiuqx?], [H]elp: N
 Keep ncurses-shlibs? [Ynpsiuqx?], [H]elp: N
 Keep system-openssl-dev? [Ynpsiuqx?], [H]elp: N
 Reading Package Lists... Done
 Building Dependency Tree... Done
 The following packages will be REMOVED:
   cctools-extra* fink-prebinding* ncurses-shlibs* system-openssl-dev*
 WARNING: The following essential packages will be removed
 This should NOT be done unless you know exactly what you are doing!
   cctools-extra fink-prebinding ncurses-shlibs
 0 packages upgraded, 0 newly installed, 4 to remove and 0  not  
 upgraded.
 Need to get 0B of archives. After unpacking 2732kB will be freed.
 You are about to do something potentially harmful
 To continue type in the phrase 'Yes, do as I say!'
  ?]
 =

 So are you *sure* it's ok to remove these programs?


 As Martin said, they're all marked as Essential: no, so they're not
 essential for Fink.  debfoster apparently just sees the presence of
 the Essential field as marking a package as essential, rather than
 whether the field is set to yes

After some testing and reading code, I believe that debfoster is  
handling the Essential field correctly. However, apt does not. The  
prompt
 You are about to do something potentially harmful
 To continue type in the phrase 'Yes, do as I say!'

does come from apt being told by debfoster to remove packages which  
have Essential: no set. 'apt-cache show fink-prebinding' actually  
report Essential: yes, while the info file clearly says Essential:  
no. I haven't found out where apt gets it wrong.

Remi

--
Fashion is a form of ugliness so intolerable that we have to alter it
every six months.   (Oscar Wilde)

*
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University of Manchester   URL:http://cern.ch/mommsen
Fermilab, MS 357 voice:++1 (630) 840-8321
P.O. Box 500   fax:++1 (630) 840-2649
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Re: [Fink-users] whither clamav?

[Remi Mommsen]

Hi,

On Nov 12, 2006, at 2:00 PM, Alexander Hansen wrote:

 On 11/11/06, Chris Schram [EMAIL PROTECTED] wrote:
 For about a week freshclam has been issuing this warning:

 WARNING: Your ClamAV installation is OUTDATED!
 WARNING: Current functionality level = 9, recommended = 10

 It would seem that updating clamav to version 0.88.6 would be a  
 solution
 to this problem. In the past, the fink release of clamav has come  
 within a
 couple days of the official release.

 I use clamav mostly to avoid my Mac being a conduit for windoze  
 malware,
 and I realize there is very little out there (for now) that can  
 mess up my
 Mac directly.

 Is there a simple HOWTO I can follow to get the newest clamav into  
 my fink
 hierarchy, or is a new fink release due out RSN?

 Try contacting the package's maintainer (visible if you run fink info
 clamav).  If you don't hear from them (or the package isn't updated)
 in a reasonable interval of time check back--it may be an easy change
 to update the package.

I'm on vacation, that's why it took a bit longer than usual to get  
the new fink package out. The new upstream release was made on  
November 5. Anyway, the new fink package is committed to 10.3 and  
10.4 unstable.

Remi


--
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employee to go.
John Murrell (GMSV) about SpaceShipOne
*
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[Fink-users] mac-growl-pm586-0.7-12 failed

[Remi Mommsen]

Hi,

I'm trying to install mac-growl-pm586-0.7-12 on Mac OS X Tiger  
(10.4.6). I'm using the system perl 5.8.6.

It fails during the tests:

make test
PERL_DL_NONLAZY=1 /usr/bin/perl5.8.6 -MExtUtils::Command::MM -e  
test_harness(0, 'blib/lib', 'blib/arch') t/*.t
t/Mac-Growlok 1/11 ERROR  PerlObjCBridge:  
convertPerlToObjC(): Referenced thingy not blessed
 ERROR  PerlObjCBridge: convertArg() for index 2:  
convertPerlToObjC() failed
 ERROR  PerlObjCBridge: sendObjcMessage: Error converting  
argument 1 for message iconForFile:
 ERROR  PerlObjCBridge: error sending message iconForFile:  
at /System/Library/Perl/Extras/5.8.6/darwin-thread-multi-2level/ 
PerlObjCBridge.pm line 230, DATA line 1.
# Looks like you planned 11 tests but only ran 1.
# Looks like your test died just after 1.
t/Mac-Growldubious
 Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED tests 2-11
 Failed 10/11 tests, 9.09% okay
Failed Test   Stat Wstat Total Fail  Failed  List of Failed
 
---
t/Mac-Growl.t  255 6528011   20 181.82%  2-11
Failed 1/1 test scripts, 0.00% okay. 10/11 subtests failed, 9.09% okay.
make: *** [test_dynamic] Error 2
### execution of make failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-mac-growl-pm586-0.7-12
(Reading database ... 21 files and directories currently installed.)
Removing fink-buildlock-mac-growl-pm586-0.7-12 ...
Failed: phase compiling: mac-growl-pm586-0.7-12 failed

Before reporting any errors, please run fink selfupdate and
try again.  If you continue to have issues, please check to see if the
FAQ on fink's website solves the problem.  If not, ask on the fink-users
or fink-beginners mailing lists.  As a last resort, you can try e- 
mailing
the maintainer directly:

 Justin F. Hallett [EMAIL PROTECTED]


TIA,
Remi


--
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It comes bundled with your Microsoft product.   (Ferenc Mantfeld)

*
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Re: [Fink-users] bison md5sum failure

[Remi Mommsen]

Hi,

On Apr 7, 2006, at 8:32 AM, Remi Mommsen wrote:


Hi Martin,

On Apr 7, 2006, at 12:37 AM, Martin Costabel wrote:


Remi Mommsen wrote:
[]
The checksum of the file is incorrect. The most likely cause for  
this is a corrupted or incomplete download

Expected: b236923e7d4909c6fd8873ac87431833fa45069b
Actual: MD5(b1468d49c1357aebcd1de6ef12cbf3e8)
SHA1(b236923e7d4909c6fd8873ac87431833fa45069b)
Downloading the file bison-2.1.tar.gz failed.


I reported this 2 weeks ago to fink-devel.


Sorry, missed that.

IIRC passing to a newer version of fink HEAD solved it. In any  
case, if you just go ahead, choose give up and build the  
package, there will be no problem, because the checksum is  
actually correct, only the checking code for SHA1 in fink HEAD isn't.


I guess I haven't payed attention to the SHA1 sum. Unfortunately,  
the problem is not solved in fink HEAD (as of  
fink_0.24.99.cvs-20060407.1318_darwin-powerpc, 10.4 tree, Mac OS X  
10.4.6).


I believe this statement is not true. The trick is to run 'fink index  
-f'. I guess at some point fink HEAD screwed something up in the  
package database.


Cheers,
Remi

--
Truth decays into beauty, while beauty soon becomes merely charm.
Charm ends up as strangeness, and even that doesn't last, but up and
down are forever. (Anonymous)

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Re: [Fink-users] bison md5sum failure

[Remi Mommsen]

Hi Martin,

On Apr 7, 2006, at 12:37 AM, Martin Costabel wrote:


Remi Mommsen wrote:
[]
The checksum of the file is incorrect. The most likely cause for  
this is a corrupted or incomplete download

Expected: b236923e7d4909c6fd8873ac87431833fa45069b
Actual: MD5(b1468d49c1357aebcd1de6ef12cbf3e8)
SHA1(b236923e7d4909c6fd8873ac87431833fa45069b)
Downloading the file bison-2.1.tar.gz failed.


I reported this 2 weeks ago to fink-devel.


Sorry, missed that.

IIRC passing to a newer version of fink HEAD solved it. In any  
case, if you just go ahead, choose give up and build the package,  
there will be no problem, because the checksum is actually correct,  
only the checking code for SHA1 in fink HEAD isn't.


I guess I haven't payed attention to the SHA1 sum. Unfortunately, the  
problem is not solved in fink HEAD (as of  
fink_0.24.99.cvs-20060407.1318_darwin-powerpc, 10.4 tree, Mac OS X  
10.4.6).


Cheers,
Remi


--
Q: How many kinds of physicists are there?
A: Three. Those who can count and those who can't.

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Re: Re(2): [Fink-users] Possibly Corrupt /sw/bin/init.csh File

[Remi Mommsen]

Hi,

On Apr 6, 2006, at 10:21 AM, Emily Jackson wrote:


At 9:51 AM -0500 on Thursday, April 6, 2006, Benjamin Reed
[EMAIL PROTECTED] wrote:


Chris Dolan wrote:

Just a small possibility: do you have a .tcshrc file in your home  
dir?

tcsh looks for .tcshrc and then .cshrc.

If that doesn't do it, then try this:
  * Move your .cshrc to a temporary location for safekeeping
  * Make a new .cshrc that has only the  source /sw/bin/init.csh
  * Open a new terminal window

If you still get the error, then it is indeed a flaw in init.csh.
Otherwise, I think it's more likely to be a bad interaction  
between your
rc and the Fink init.  For example, I often see tcsh: Word too  
long.
in my own shell when I run init.csh a second time because (I  
think) fink

appends to my already-long CLASSPATH variable.  So, in that example
neither .cshrc nor init.csh is at fault, but a bad interaction  
between

them.  Your problem may be similar.


It could also be a package doing something bad in /sw/etc/ 
profile.d --

any of the .csh files in there are sourced during fink init.


I rebuilt/reinstalled all the packages in /sw/etc/profile.d, and I
created a .cshrc with just source /sw/bin/init.csh. Terminal.app  
works

OK, but every new terminal window in X11 displays that error. When I
revert to my old .cshrc (which, as a pointed out earlier, has no if
statements), Terminal.app displays the error if I execute source /sw/
bin/init.csh but otherwise is still usable (aliases work). I don't
remember installing anything yesterday, and X11 was working normally
yesterday. Now I have to use Terminal.app to launch X11 programs and
then bring X11 to the front manually.

Emily


I just ran 'fink update-all' and have the same issue with tcsh: if:
Expression Syntax. Running 'tcsh -X' ends with:

source /sw/etc/profile.d/xfontpath.csh
if ( -x /sw/bin/xfontpath  1 ) then
if ( x:0.0 = x:0.0 ) then
tcsh: if: Expression Syntax.

/sw/etc/profile.d/xfontpath.csh should read

if ( -x /sw/bin/xfontpath  $?DISPLAY ) then
if ( x$DISPLAY == x:0.0 ) then
( /sw/bin/xfontpath enable  )  /dev/null
endif
endif

Note the '==' instead of '='.
The bash version works.

Cc'd Aida who committed the new version yesterday. The bug is in the  
tarball.


Cheers,
Remi



--
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A: Three. Those who can count and those who can't.

*
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[Fink-users] bison md5sum failure

[Remi Mommsen]

Hi Darian,

I get a persistent md5sum error for bison-2.1-1 (10.4 tree):

curl -f -L -O http://distfiles.master.finkmirrors.net/bison-2.1.tar.gz
  % Total% Received % Xferd  Average Speed   TimeTime  
Time  Current
 Dload  Upload   Total   Spent 
Left  Speed
100 1285k  100 1285k0 0  75028  0  0:00:17  0:00:17  
--:--:--  134k
The checksum of the file is incorrect. The most likely cause for this  
is a corrupted or incomplete download

Expected: b236923e7d4909c6fd8873ac87431833fa45069b
Actual: MD5(b1468d49c1357aebcd1de6ef12cbf3e8)
SHA1(b236923e7d4909c6fd8873ac87431833fa45069b)
Downloading the file bison-2.1.tar.gz failed.

(1) Give up
(2) Retry the same mirror
(3) Retry another mirror from your country
(4) Retry another mirror
(5) Retry using next mirror set gnu

Default answer will be chosen in 7 seconds...
How do you want to proceed? [3] 5
curl -f -L -O ftp://mirrors.kernel.org/gnu/bison/bison-2.1.tar.gz
  % Total% Received % Xferd  Average Speed   TimeTime  
Time  Current
 Dload  Upload   Total   Spent 
Left  Speed
100 1285k  100 1285k0 0   106k  0  0:00:12  0:00:12  
--:--:--  140k
The checksum of the file is incorrect. The most likely cause for this  
is a corrupted or incomplete download

Expected: b236923e7d4909c6fd8873ac87431833fa45069b
Actual: MD5(b1468d49c1357aebcd1de6ef12cbf3e8)
SHA1(b236923e7d4909c6fd8873ac87431833fa45069b)
Downloading the file bison-2.1.tar.gz failed.

Note: the actual MD5 is the same from  
distfiles.master.finkmirrors.net and gnu mirror.


Thanks for looking into this issue,
Remi


--
… there are known knowns;  there are things we know we know.  We also
know there are known unknowns;  that is to say we know there are some
things we do not know. But there are also unknown unknowns — the ones
we don’t know we don’t know.
  Donald Rumsfeld
*
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University of Manchester   URL:http://cern.ch/mommsen
Fermilab, MS 357 voice:++1 (630) 840-8321
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Re: [Fink-users] Multiple update problems cernlib2005

[Remi Mommsen]

Hi,

On Feb 24, 2006, at 11:24 AM, Alexander K. Hansen wrote:


On 2/23/06, jkolata [EMAIL PROTECTED] wrote:
I did a selfupdate-rsync yesterday and then tried an update-all.   
It failed

on the first package, which happened to
be autoconf2.5.  I then tried to compile the outdated packages one  
by one

and most compilations succeeded.  I tried
to compile one new package (cernlib2005) which also failed.  One  
anomaly was

that I was able to compile
the mozilla-browser package successfully, producing an apparently  
running

version of mozilla 1.7.5,
while the complete mozilla install failed.  I should mention that  
I upgraded

to Xcode 2.2 last week.

I am running OSX 10.4.5 on a PowerBook G4.  The fink version is  
0.24.12 and

0.8.0.rsync,
with Fink Commander version 0.5.4.(release).  As noted, I recently  
upgraded

to Xcode 2.2.
Here are portions of the fink output from the failed compiles.  A  
common

problem seems to
be finding files and making directories:




Trying to install cernlib2005:



/bin/mv
/sw/src/fink.build/root-cernlib2005-2005-11/sw/bin/paw++
/sw/src/fink.build/root-cernlib2005-paw++-2005-11/sw/bin/

mv: rename
/sw/src/fink.build/root-cernlib2005-2005-11/sw/bin/paw++
to
/sw/src/fink.build/root-cernlib2005-paw++-2005-11/sw/bin/paw++:
No such file or directory

### execution of /bin/mv failed, exit code 1

Removing build lock...

/sw/bin/dpkg-lockwait -r fink-buildlock-cernlib2005-2005-11

(Reading database ... 45633 files and directories currently  
installed.)


Removing fink-buildlock-cernlib2005-2005-11 ...

Failed: phase installing: cernlib2005-paw++-2005-11 failed



This one is in the FAQ:

http://fink.sourceforge.net/faq/comp-general.php?phpLang=en#mv-failed


This symptom came up a few times and was caused by g77 looking into  
the wrong directory, i.e. something along these lines:
g77 -o neutnucl.exe -O2 -g neutnucl_main.o neutnucl_corr.o onelints.o  
neutnucl_scal.o vegan.o gauss.o mrst2004qedx.o `cernlib -v pro  
pdflib,packlib,mathlib,kernlib`
/usr/bin/ld: can't open: /usr/lib/gcc/powerpc-apple-darwin8/4.0.0/ 
libgcc.a (No such file or directory, errno = 2)

collect2: ld returned 1 exit status
make: *** [neutnucl.exe] Error 1

while the actual directory is /usr/lib/gcc/powerpc-apple- 
darwin8/4.0.1. I believe this is fixed in the current version of g77.


HTH,
Remi

--
Truth decays into beauty, while beauty soon becomes merely charm.
Charm ends up as strangeness, and even that doesn't last, but up and
down are forever. (Anonymous)

*
Remigius K. Mommsen e-mail:  [EMAIL PROTECTED]
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Re: [Fink-users] How to find obsolete packages

[Remi Mommsen]

Hi Markus,

On Jan 15, 2006, at 12:07 PM, Markus Kamp wrote:


Hi folks!

I like to play around with fink in a way that I often install  
programs to take a look at them, use them for some weeks and remove  
them again if I didn't find them useful or found better apps to  
serve my needs..


You see that many packages get installed as dependencies as well,  
while they are not removed again, when i remove my toys.


Now that I'm running short on diskspace I am looking for a way to  
find these obsolete packages to remove them. What I do at the  
moment is to try to remove a random package and see if fink reports  
other packages that have to be uninstalled too because of  
dependencies...


Is there a way to let fink list all packages that are no others  
depend on, so I can speed up this process and don't have to guess  
which are save to delete?


That's what the debfoster package is for. Install it and run 'sudo  
debfoster'. It will ask you which packages you want to keep which are  
not required by other installed packages.


HTH,
Remi


--
Q: How many kinds of physicists are there?
A: Three. Those who can count and those who can't.

*
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Re: [Fink-users] pwlib-1.5.2-14 fails on 10.4

[Remi Mommsen]

[cc'ing the maintainer]

Hi again,

On Jan 15, 2006, at 11:11 AM, Remi Mommsen wrote:


Hi,

I tried a while ago to install gnomemeeting, but failed due to  
pwlib. After today's update of pwlib in 10.4-t/unstable by Dan, I  
gave it another spin, but failed due the same issue with  
conflicting types of socklen_t:


make CPLUS=g++3 PWLIBDIR=/sw/src/fink.build/pwlib-1.5.2-14/pwlib  
opt LDSOOPTS=-dynamiclib -compatibility_version 1.5 - 
current_version 1.5.2 -install_name /sw/lib/pwlib/lib/ 
libpt_Darwin_ppc_r.1.5.dylib libso_target=lib/libpt_Darwin_ppc_r. 
1.5.2.dylib

set -e; make -C src/ptlib/unix opt; make -C tools/asnparser opt;
g++3 -DP_MACOSX=840 -DNO_LONG_DOUBLE -D_REENTRANT -Wall  - 
DPHAS_TEMPLATES -I/sw/src/fink.build/pwlib-1.5.2-14/pwlib/include/ 
ptlib/unix -I/usr/include/pwlib -I/sw/src/fink.build/pwlib-1.5.2-14/ 
pwlib/include -O2 -DNDEBUG -I/sw/include -fno-common -dynamic -fno- 
common -dynamic -DPTRACING=1 -x c++ -c ../../ptclib/asner.cxx -o / 
sw/src/fink.build/pwlib-1.5.2-14/pwlib/lib/obj_Darwin_ppc_r/asner.o
In file included from /sw/src/fink.build/pwlib-1.5.2-14/pwlib/ 
include/ptlib/unix/ptlib/contain.h:57,
 from /sw/src/fink.build/pwlib-1.5.2-14/pwlib/ 
include/ptlib.h:139,

 from ../../ptclib/asner.cxx:290:
/sw/src/fink.build/pwlib-1.5.2-14/pwlib/include/ptlib/unix/ptlib/ 
pmachdep.h:448: conflicting

   types for `typedef int socklen_t'
/usr/include/sys/socket.h:99: previous declaration as `typedef
   __darwin_socklen_t socklen_t'
make[1]: *** [/sw/src/fink.build/pwlib-1.5.2-14/pwlib/lib/ 
obj_Darwin_ppc_r/asner.o] Error 1

make: *** [opt] Error 2
### execution of make failed, exit code 2
Failed: phase compiling: pwlib-1.5.2-14 failed


I noticed that this problem was already reported back in June 2005:
http://thread.gmane.org/gmane.os.macosx.fink.devel/10980
but no complete solution seems to have been found.

Has anybody been successful in getting pwlib to compile on Tiger?


After some more googling, I found various bit and pieces of patches  
for pwlib. I collected them replaced the existing pwlib.patch. With  
this patch, pwlib builds fine. I put the complete patch into my  
experimental tree at experimental/mommsen/10.4-transitional/crypto.


Let me know if I shall commit it to 10.4-transitional/unstable.

Cheers,
Remi


--
I haven't lost my mind - it's backed up on my disk somewhere.

*
Remigius K. Mommsen e-mail:  [EMAIL PROTECTED]
University of Manchester   URL:http://cern.ch/mommsen
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Re: [Fink-users] Bug in final release of auctex

[Remi Mommsen]

Hi Wolfram,

On Dec 8, 2005, at 5:45 AM, [EMAIL PROTECTED] wrote:


Hi,

I have a problem trying to remove the binary installation of  
auctex. Neither fink remove nor dpkg --remove have the desired  
effect. The output looks as follows (my commands are preceded by $  
):


$ sudo fink remove --recursive auctex
Password:
Information about 5144 packages read in 3 seconds.
/sw/bin/apt-get-lockwait remove auctex
Reading Package Lists... Done
Building Dependency Tree... Done
The following packages will be REMOVED:
  auctex
0 packages upgraded, 0 newly installed, 1 to remove and 0  not  
upgraded.

Need to get 0B of archives. After unpacking 1536kB will be freed.
Do you want to continue? [Y/n]
(Reading database ... 48962 files and directories currently  
installed.)

Removing auctex ...
remove/auctex: Removing for emacs21... rmdir: illegal option -- -
usage: rmdir [-p] directory ...
emacs-package-remove: /sw/lib/emacsen-common/packages/remove/auctex  
emacs21 emacs21 failed at /sw/lib/emacsen-common/emacs-package- 
remove line 30.

/sw/bin/dpkg: error processing auctex (--remove):
subprocess pre-removal script returned error exit status 1
install/auctex: Byte-compiling for emacs21... done.
Checking /sw/var/lib/auctex/emacs21/...
Done (Total of 0 files compiled)
* AUCTeX: (auctex). A much enhanced LaTeX mode for GNU Emacs.
install-info(/sw/share/info/auctex): replacing existing dir entry  
for `auctex'

Errors were encountered while processing:
auctex
E: Sub-process /sw/bin/dpkg returned an error code (1)
### execution of /sw/bin/apt-get-lockwait failed, exit code 100
Failed: can't remove package auctex
$
$ sudo dpkg --remove auctex
Password:
(Reading database ... 48962 files and directories currently  
installed.)

Removing auctex ...
remove/auctex: Removing for emacs21... rmdir: illegal option -- -
usage: rmdir [-p] directory ...
emacs-package-remove: /sw/lib/emacsen-common/packages/remove/auctex  
emacs21 emacs21 failed at /sw/lib/emacsen-common/emacs-package- 
remove line 30.

/sw/bin/dpkg: error processing auctex (--remove):
subprocess pre-removal script returned error exit status 1
install/auctex: Byte-compiling for emacs21... done.
Checking /sw/var/lib/auctex/emacs21/...
Done (Total of 0 files compiled)
* AUCTeX: (auctex). A much enhanced LaTeX mode for GNU Emacs.
install-info(/sw/share/info/auctex): replacing existing dir entry  
for `auctex'

Errors were encountered while processing:
auctex
$

I am running MacOS X 10.4 with all updates installed. I have run  
fink selfupdate and fink update-all before removing auctex.  
Actually, the reason why I want to remove auctex is because the  
above problem caused the update-all to fail.


Is there anything short of rm -rf /sw and reinstalling all to  
solve this problem?


Thanks in advance!


This is caused by a bug in the pre-remove script which was quickly  
fixed. But you seem to have been unlucky to have gotten the bad version.


You have two possibilities:
(1) Install fileutils from fink before removing auctex. You can  
remove fileutils after removing auctex, i.e. do

$ fink install fileutils
$ fink remove auctex (or fink update auctex)
$ fink remove fileutils

(2) Or remove the bogus pre-remove script first, i.e.
$ sudo rm -f /sw/lib/emacsen-common/packages/remove/auctex
and then update auctex to the latest version
$ fink update auctex

HTH,
Remi

--
Intelligence is like a four-wheel drive vehicle: it allows you to get
stuck in much more remote places.

*
Remigius K. Mommsen e-mail:  [EMAIL PROTECTED]
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[Fink-users] Install of auctex-11.13-12 fails w/o fileutils

[Remi Mommsen]

Hi,

The latest auctex-11.13-12 fails the install phase if fileutils is  
not installed:


/sw/bin/dpkg-lockwait -i /sw/fink/dists/unstable/main/binary-darwin- 
powerpc/editors/auctex_11.13-12_darwin-powerpc.deb

(Reading database ... 109852 files and directories currently installed.)
Preparing to replace auctex 11.13-11 (using .../ 
auctex_11.13-12_darwin-powerpc.deb) ...

remove/auctex: Removing for emacs21... rmdir: illegal option -- -
usage: rmdir [-p] directory ...
emacs-package-remove: /sw/lib/emacsen-common/packages/remove/auctex  
emacs21 emacs21 failed at /sw/lib/emacsen-common/emacs-package-remove  
line 30.

dpkg: warning - old pre-removal script returned error exit status 1
dpkg - trying script from the new package instead ...
remove/auctex: Removing for emacs21... rmdir: illegal option -- -
usage: rmdir [-p] directory ...
emacs-package-remove: /sw/lib/emacsen-common/packages/remove/auctex  
emacs21 emacs21 failed at /sw/lib/emacsen-common/emacs-package-remove  
line 30.
/sw/bin/dpkg: error processing /sw/fink/dists/unstable/main/binary- 
darwin-powerpc/editors/auctex_11.13-12_darwin-powerpc.deb (--install):

subprocess new pre-removal script returned error exit status 1
install/auctex: Byte-compiling for emacs21... done.
Checking /sw/var/lib/auctex/emacs21/...
Done (Total of 0 files compiled)
* AUCTeX: (auctex). A much enhanced LaTeX mode for GNU Emacs.
install-info(/sw/share/info/auctex): replacing existing dir entry for  
`auctex'

Errors were encountered while processing:
/sw/fink/dists/unstable/main/binary-darwin-powerpc/editors/ 
auctex_11.13-12_darwin-powerpc.deb

### execution of /sw/bin/dpkg-lockwait failed, exit code 1
Failed: can't install package auctex-11.13-12

fink -V
Package manager version: 0.24.99.cvs
Distribution version: 0.8.0.cvs

Mac OS X 10.4.3

Thanks for looking into it.

Remi



--
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we don’t know we don’t know.
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Re: [Fink-users] clamav executable?

[Remi Mommsen]

Hi Phil,

On Dec 3, 2005, at 11:36 PM, Philip Ershler wrote:

I just did a selfupdate and then did an update of clamav. It should  
have resulted in /sw/sbin/clamd, but it's not there. I can't find  
the clamd executable anywhere in the /sw tree. Does anybody have  
any suggestions?


Install clamav-daemon, which will also start the clamd for you using  
daemonic.


HTH,
Remi

--
No trees were killed in the sending of this message.
However, a large number of electrons were terribly inconvenienced.

*
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Re: [Fink-users] clhep-1.9.2.1-51 build problem (was no subject)

[Remi Mommsen]

Hi Robert,

On Nov 15, 2005, at 3:31 PM, Robert Bernstein wrote:


Hi,

Alexander or Remi,  did you ever work this out?  I am seeing the  
identical problem now trying to install GEANT4. --thanks, Robert  
Bernstein


Do you have problems with installing geant4 or with compiling the  
examples? As Hans has problems with the examples, I assume you mean  
the latter. Otherwise, you need to tell me more about the problems  
you have.


The issue Hans had was that the dependency files (*.d) found in ~/ 
geant4/tmp/Darwin-g++/ still point to a previous version of geant4.  
You can remove anything in there.


HTH,
Remi



--
To boldly  go  where  no  corporate benefits plan  ever  expected  an
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Re: [Fink-users] clhep-1.9.2.1-51 build problem (was no subject)

[Remi Mommsen]

Hi Hans,

On Oct 5, 2005, at 9:52 AM, Hans Fynbo wrote:

Trying to install GEANT4 on my powerbook G4 running 10.4 gcc 4.0 I  
get the following

error. Any suggestions ?

Hans

Making all in src
g++-4.0 -DHAVE_CONFIG_H -I. -I. -I../GenericFunctions -I..  -I/sw/ 
include -O -ansi -pedantic -Wall -D_GNU_SOURCE -g -O2 -c -o Abs.o  
Abs.cc
g++-4.0 -DHAVE_CONFIG_H -I. -I. -I../GenericFunctions -I..  -I/sw/ 
include -O -ansi -pedantic -Wall -D_GNU_SOURCE -g -O2 -c -o  
AbsFunctional.o AbsFunctional.cc
g++-4.0 -DHAVE_CONFIG_H -I. -I. -I../GenericFunctions -I..  -I/sw/ 
include -O -ansi -pedantic -Wall -D_GNU_SOURCE -g -O2 -c -o  
AbsFunction.o AbsFunction.cc
AbsFunction.cc: In function `Genfun::FunctionPlusParameter  
Genfun::operator-(const Genfun::AbsFunction, const  
Genfun::AbsParameter)':
AbsFunction.cc:127: error: cannot allocate an object of abstract  
type 'Genfun::AbsParameter'
../CLHEP/GenericFunctions/AbsParameter.hh:22: note:   because the  
following virtual functions are pure within 'Genfun::AbsParameter':
../CLHEP/GenericFunctions/AbsParameter.hh:36: note:  virtual double  
Genfun::AbsParameter::getValue() const
../CLHEP/GenericFunctions/AbsParameter.hh:50: note:  virtual  
Genfun::AbsParameter* Genfun::AbsParameter::_clone() const
AbsFunction.cc: In function `Genfun::FunctionTimesParameter  
Genfun::operator/(const Genfun::AbsFunction, const  
Genfun::AbsParameter)':
AbsFunction.cc:133: error: cannot allocate an object of abstract  
type 'Genfun::AbsParameter'
../CLHEP/GenericFunctions/AbsParameter.hh:22: note:   since type  
'Genfun::AbsParameter' has pure virtual functions
AbsFunction.cc: In function `Genfun::FunctionPlusParameter  
Genfun::operator-(const Genfun::AbsParameter, const  
Genfun::AbsFunction)':
AbsFunction.cc:146: error: cannot allocate an object of abstract  
type 'Genfun::AbsFunction'
../CLHEP/GenericFunctions/AbsFunction.hh:47: note:   because the  
following virtual functions are pure within 'Genfun::AbsFunction':
../CLHEP/GenericFunctions/AbsFunction.hh:64: note:  virtual double  
Genfun::AbsFunction::operator()(double) const
../CLHEP/GenericFunctions/AbsFunction.hh:65: note:  virtual double  
Genfun::AbsFunction::operator()(const Genfun::Argument) const
../CLHEP/GenericFunctions/AbsFunction.hh:87: note:  virtual  
Genfun::AbsFunction* Genfun::AbsFunction::_clone() const
AbsFunction.cc: In function `Genfun::FunctionTimesParameter  
Genfun::operator/(const Genfun::AbsParameter, const  
Genfun::AbsFunction)':
AbsFunction.cc:151: error: cannot allocate an object of abstract  
type 'Genfun::AbsFunction'
../CLHEP/GenericFunctions/AbsFunction.hh:47: note:   since type  
'Genfun::AbsFunction' has pure virtual functions

make[2]: *** [AbsFunction.o] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all-recursive] Error 1
### execution of make failed, exit code 2
Removing build lock...
/sw/bin/dpkg-lockwait -r fink-buildlock-clhep-1.9.2.1-51
(Reading database ... 28647 files and directories currently  
installed.)

Removing fink-buildlock-clhep-1.9.2.1-51 ...
Failed: phase compiling: clhep-1.9.2.1-51 failed



I cannot reproduce this problem (PB G4, gcc 4.0). Can you send me the  
output of the following commands:

g++-4.0 -v
where g++-4.0
fink list clhep


Cheers,
Remi


--
I haven't lost my mind - it's backed up on my disk somewhere.

*
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Re: [Fink-users] clamav

[Remi Mommsen]

Hi,

On Jul 29, 2005, at 1:11 PM, Daniel Macks wrote:


On Fri, Jul 29, 2005 at 10:46:30AM -0700, Jason Warren wrote:


Is clamav being frozen in the 10.3 trees?



I don't believe so, that's really a question for the Maintainer. Fink
has clamav 0.86.1 for both 10.3 and 10.4T; 0.86.2 was released less
than a week ago.


I've been on vacations and catching up with my mail. It will take me  
a couple of days to update clamav to the latest release, but it will  
happen for 10.3 and 10.4T.


Cheers,
Remi


-
If it's green, it's biology. If it stinks, it's chemistry. If it has
numbers, it's math. If it doesn't work, it's technology. (anonymous)

*
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Re: [Fink-users] X11 Forwarding not working

[Remi Mommsen]

Hi Curtis,

On Jun 15, 2005, at 3:22 PM, Curtis Vaughan wrote:

I realize that this is not a Fink issue, but I was hoping maybe  
someone could explain what this means.


I want to X forward from a Linux box to my iBook (through the X  
terminal of course) mysql-admin. I would swear that this worked  
prior to Tiger, but I'm not certain. Anyhow, I get the following  
error:


The program 'mysql-admin' received an X Window System error.
This probably reflects a bug in the program.
The error was 'BadWindow (invalid Window parameter)'.
  (Details: serial 65 error_code 3 request_code 38 minor_code 0)
  (Note to programmers: normally, X errors are reported  
asynchronously;

   that is, you will receive the error a while after causing it.
   To debug your program, run it with the --sync command line
   option to change this behavior. You can then get a meaningful
   backtrace from your debugger if you break on the gdk_x_error()  
function.)



However, if I run mozilla from the same linux box using X  
forwarding on my box, it works fine.


Is it a mysql-admin problem, an X11 problem, or what?


Most likely a ssh problem. The newer version of ssh shipped with  
Tiger cranked up the security on X11 connections. Only trusted  
clients are allowed to connect (see http://davinci01.man.ac.uk/aix433/ 
x11/specs/pdf/security.htm for details).


Try to connect to the server with ssh -Y (instead of -X) which  
effectively disables the additional security layer and treats all  
clients as trusted. If you want to have it for all ssh connections,  
you can add 'ForwardX11Trusted yes' to your /etc/ssh_config.


HTH,
Remi


-
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where in the universe is that none of it has tried to contact us.
  Calvin (Bill Watterson)

*
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[Fink-users] gtk+2-2.4.9-8 fails agains xorg 6.8.2-33

[Remi Mommsen]

Hi,
While updating the gnome packages on Tiger (but it also happens on  
Panther), gtk+2 fails while building against xorg with a missing  
header file:

gcc -DHAVE_CONFIG_H -I. -I. -I../.. -DG_LOG_DOMAIN=\Gdk\ - 
DGDK_COMPILATION -I../.. -I../../gdk -I../../gdk - 
DG_DISABLE_DEPRECATED -DGDK_PIXBUF_DISABLE_DEPRECATED - 
DGDK_DISABLE_DEPRECATED -DG_DISABLE_CAST_CHECKS -I/sw/include/ 
glib-2.0 -I/sw/lib/glib-2.0/include -I/sw/include/pango-1.0 -I/usr/ 
X11R6/include -I/usr/X11R6/include/freetype2 -DXTHREADS -D_REENTRANT - 
DXUSE_MTSAFE_API -DXNO_MTSAFE_UNISTDAPI -I/usr/X11R6/include -no-cpp- 
precomp -DX_LOCALE -I/sw/include -O3 -funroll-loops -fstrict-aliasing  
-pipe -Wall -MT gdkcolor-x11.lo -MD -MP -MF .deps/gdkcolor-x11.Tpo -c  
gdkcolor-x11.c -o gdkcolor-x11.o /dev/null 21
gdkcursor-x11.c:31:33: error: X11/Xcursor/Xcursor.h: No such file or  
directory


-
Truth decays into beauty, while beauty soon becomes merely charm.
Charm ends up as strangeness, and even that doesn't last, but up and
down are forever. (Anonymous)
*
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[Fink-users] tetex-texmf 3.0-1 w/o psfig.sty

[Remi Mommsen]

Hi Dave,
I just found out that tetex-texmf 3.0-1 no longer includes the legacy 
style psfig.sty. A package I maintain (CLHEP) still uses this style for 
the documentation. I tried to replace it with epsfig.sty, but this 
breaks documentation creation, too. Anyway, before digging further into 
it, I wonder if it is a kind of omission that psfig.sty no longer ships 
with tetex. Do you know what happened?

Thanks a lot.
Remi
-
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we dont know we dont know.
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[Fink-users] Build of pil-py23-1.1.4-26 fails with newest freetype

[Remi Mommsen]

Hi Jeff,
I tried to build pil-py23-1.1.4-26 against freetype and during building 
the '_imagingft' extension, I hit the error described in
http://effbot.org/zone/pil-errata-114.htm

I applied the patch and it compiled fine after adding
INCLUDE_DIRS.append(/usr/X11R6/include)
to setup.py.
However, I guess this patch breaks the code for older freetype 
versions. According to above website, version 1.1.5 should fix this 
issue.

Cheers,
Remi
-
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A: Three. Those who can count and those who can't.
*
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Re: [Fink-users] Build of pil-py23-1.1.4-26 fails with newest freetype

[Remi Mommsen]

Hi Martin,
On Mar 17, 2005, at 12:35 PM, Martin Costabel wrote:
On 17 mars 2005, at 12:18, Remi Mommsen wrote:
Hi Jeff,
I tried to build pil-py23-1.1.4-26 against freetype and during 
building the '_imagingft' extension, I hit the error described in
http://effbot.org/zone/pil-errata-114.htm

I applied the patch and it compiled fine after adding
INCLUDE_DIRS.append(/usr/X11R6/include)
to setup.py.
However, I guess this patch breaks the code for older freetype 
versions.
No, it should work with all versions of X11 that are currently 
available for OSX = 10.2. For older versions, you wouldn't even need 
to do your INCLUDE_DIRS.append.
That's great. Frankly, I lost a long time ago the overview of the 
freetype mess. Anyway, let me know if I shall commit the fixed version.

Cheers,
Remi
-
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numbers, it's math. If it doesn't work, it's technology. (anonymous)
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[Fink-users] gv build fails due to incomplete include

[Remi Mommsen]

Hi Jeffrey,
I tried today updating gv, but it fails because the compile statement 
lacks -I/usr/X11R6/include. configure does find the headers.

fink update gv
...
checking for X... libraries /usr/X11R6/lib, headers /usr/X11R6/include
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for XOpenDisplay in -lX11... yes
checking for main in -lICE... yes
checking for main in -lSM... yes
checking for main in -lXext... yes
checking for XtOpenDisplay in -lXt... yes
checking for main in -lXmu... yes
checking for main in -lXpm... yes
checking for XawInitializeWidgetSet in -lXaw3d... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating doc/version.texi
config.status: creating src/Makefile
config.status: creating doc/Makefile
config.status: creating src/ac_config.h
config.status: executing depfiles commands
make
Making all in src
creating gv_intern_res_unix.dat
creating gv_intern_res_unix.h
creating gv_make_res.dat
creating gv_class.ad
cp ./gv_copyright.dat ./gv_class.ad
creating gv_class.h
make  all-am
if gcc -DHAVE_CONFIG_H -I. -I. -I.  -DNON_BLOCKING_IO -DGV_CODE 
-DGV_CODE -DGV_LIBDIR=\/sw/lib/gv\ -I/sw/include  -g -O2 -MT Aaa.o 
-MD -MP -MF .deps/Aaa.Tpo -c -o Aaa.o Aaa.c; \
then mv -f .deps/Aaa.Tpo .deps/Aaa.Po; else rm -f .deps/Aaa.Tpo; 
exit 1; fi
In file included from Aaa.c:49:
Aaa_intern.h:49:28: X11/Xlib.h: No such file or directory
Aaa_intern.h:50:33: X11/Xresource.h: No such file or directory
...

Cheers,
Remi
-
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  Calvin (Bill Watterson)
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Re: [Fink-users] ClamAV 0.80-2

[Remi Mommsen]

Hi Jason,
There is a new split-off called clamav-daemon which installs and starts 
the clamd using daemonic.

HTH,
Remi
On Oct 19, 2004, at 10:09 AM, exu wrote:
I updated my ClamAV install this morning and I think I am going 
insane. I can't find clamd which should be installed in /sw/sbin/clamd 
.

Did they completely change things??
thanbks,
jason

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Re: [Fink-users] ClamAV 0.80-2

[Remi Mommsen]

[cc'ing clamXav maintainer Mark Allan]
Hi Alexander,
On Oct 19, 2004, at 12:23 PM, Alexander K. Hansen wrote:
Remi:  you mentioned in one of the commits messages that the code has 
incorporated upstream changes for the ClamXav GUI.  Do you happen to 
know what I need to do to use ClamXav with a Fink-installed clamav?
I cannot get it to work with clamAV 0.80 neither. I guess clamXav needs 
to be updated to check for the newer version number. I guess Mark Allan 
can comment on this.

Cheers,
Remi
-
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used for calibration today, and will be the background tomorrow.
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Re: [Fink-users] clamav warning

[Remi Mommsen]

Hi Christian,
On Oct 18, 2004, at 3:11 PM, Christian Ebert wrote:
Hello,
When I run freshclam I get the following warning:
WARNING: Your ClamAV installation is OUTDATED - please update 
immediately!
WARNING: Current functionality level = 2, required = 3

If it is what it seems to be, an update for 10.2-gcc3 (which I am
running) would be useful.
fink --version
Package manager version: 0.22.3
Distribution version: 0.6.3.rsync
You are running clamav version 0.75, right? I get the same warning and 
I'm a bit puzzled about it. Version 0.80 was released yesterday. I am 
preparing an update for the fink package as I write. I guess you can 
ignore the warning for the time being.

Cheers,
Remi
-
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It comes bundled with your Microsoft product.   (Ferenc Mantfeld)
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Re: [Fink-users] compile of roofitcore-root4 failed

[Remi Mommsen]

Hi Mattia,
On Oct 7, 2004, at 8:23 AM, Mattia Vaccari wrote:
I've been trying to install the roofitcore-root4 package and compling 
failed due to the following error:

---
Compiling RooFitResult.cc
RooFitResult.cc: In member function `const RooArgList
   RooFitResult::randomizePars() const':
RooFitResult.cc:267: error: variable `TVector g' has initializer but 
incomplete
   type
make: *** [RooFitResult.o] Error 1
### execution of make failed, exit code 2
Failed: compiling roofitcore-root4-1.00.04-14 failed
That's caused by a missing include statement in the upstream code. I 
will submit a new fink package shortly which fixes it.

Thanks for reporting the problem.
Cheers,
Remi
-
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after they've exhausted all the alternatives. (Winston Churchill)
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[Fink-users] openssh-3.7.1p1-1 sshd problems

[Remi Mommsen]

Hi,
I installed openssh-3.7.1p1-1 on Mac OS X 10.3.5 and have the same 
problems with sshd as reported by Alexander in this (rather) old 
thread:
http://thread.gmane.org/gmane.os.apple.fink.general/12194

However, I haven't been able to find a solution for it. I rebuilt 
openssl097 and openssh, but no avail.

Here the debug output:
sudo /sw/sbin/sshd -ddd
debug2: read_server_config: filename /sw/etc/ssh/sshd_config
debug1: sshd version OpenSSH_3.7.1p1
debug1: private host key: #0 type 0 RSA1
debug3: Not a RSA1 key file /sw/etc/ssh/ssh_host_rsa_key.
debug1: read PEM private key done: type RSA
debug1: private host key: #1 type 1 RSA
debug3: Not a RSA1 key file /sw/etc/ssh/ssh_host_dsa_key.
debug1: read PEM private key done: type DSA
debug1: private host key: #2 type 2 DSA
debug1: Bind to port 22 on ::.
Server listening on :: port 22.
debug1: Bind to port 22 on 0.0.0.0.
Server listening on 0.0.0.0 port 22.
Generating 768 bit RSA key.
RSA key generation complete.
debug1: Server will not fork when running in debugging mode.
Connection from ::1 port 58309
debug1: Client protocol version 2.0; client software version 
OpenSSH_3.7.1p1
debug1: match: OpenSSH_3.7.1p1 pat OpenSSH*
debug1: Enabling compatibility mode for protocol 2.0
debug1: Local version string SSH-1.99-OpenSSH_3.7.1p1
debug2: Network child is on pid 11251
debug3: preauth child monitor started
debug3: mm_request_receive entering
debug3: privsep user:group 75:75
debug1: permanently_set_uid: 75/75
setreuid 75: Operation not permitted
debug1: Calling cleanup 0x27930(0x0)

ssh -v [EMAIL PROTECTED]
OpenSSH_3.7.1p1, SSH protocols 1.5/2.0, OpenSSL 0.9.7d 17 Mar 2004
debug1: Reading configuration data /sw/etc/ssh/ssh_config
debug1: Connecting to localhost [::1] port 22.
debug1: Connection established.
debug1: identity file /Users/mommsen/.ssh/identity type -1
debug1: identity file /Users/mommsen/.ssh/id_rsa type 1
debug1: identity file /Users/mommsen/.ssh/id_dsa type -1
debug1: Remote protocol version 1.99, remote software version 
OpenSSH_3.7.1p1
debug1: match: OpenSSH_3.7.1p1 pat OpenSSH*
debug1: Enabling compatibility mode for protocol 2.0
debug1: Local version string SSH-2.0-OpenSSH_3.7.1p1
debug1: SSH2_MSG_KEXINIT sent
Connection closed by ::1
debug1: Calling cleanup 0x1861c(0x0)

I use that standard config files installed by the fink package and 
copied the hostkeys from /etc/.

TIA,
Remi
-
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Re: [Fink-users] Failed: Can't move /sw/fink out of the way

[Remi Mommsen]

Hi Chris,
On Sep 2, 2004, at 9:53 AM, Chris Waddling wrote:
I usually selfupdate-rsync but fink hasn't been getting the latest 
package
descriptions.  So, I thought I'd try selfupdate-cvs, and at some point
during the selfupdate, I get the error message:

Failed: Can't move /sw/fink out of the way
Any thoughts?
http://fink.sourceforge.net/faq/usage-fink.php?phpLang=en#cant-move-fink
HTH,
Remi
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Re: [Fink-users] problem building libxklavier1-1.02-4

[Remi Mommsen]

Hi,
On Jul 6, 2004, at 8:53 AM, Eric Hoch wrote:
Hi Martin,
Am Tue, 6 Jul 2004 17:26:30 +0200, schrieb Martin Costabel:
 I have the following problem building libxklavier1:
 ...
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -no-cpp-precomp -I/sw/include
 -DDATA_DIR=\/sw/share/libxklavier\ -I. -I/sw/include
 -I/sw/include/libxml2 -I/sw/include -I/usr/X11R6/include -I.. 
-O3
 -funroll-loops -fstrict-aliasing -MT xklavier_config_xkb.lo -MD
 -MP -MF .deps/xklavier_config_xkb.Tpo -c xklavier_config_xkb.c
 -fno-common -DPIC -o .libs/xklavier_config_xkb.o
 xklavier_config_xkb.c: In function `_XklGetRulesSet':
 xklavier_config_xkb.c:43: error: `XKB_RF_NAMES_PROP_ATOM'
 undeclared (first use in this function)
In that command line, I am seeing an additional
-DXKB_HEADERS_PRESENT=1 flag. There is no error message. The
difference is that I have Apple's X11 installed. So it is quite
possible that this package does not build with xfree86-4.4.0.
Is it supposed to work, anyway? AFAIK, the xkb stuff isn't used,
neither by Apple's X11 nor by XDarwin.
I donnot know if it is supposed to work anyway but for me I can say
that I use Xfree86 4.4.0. Do you know which app depends on
libxklavier1 as I only try to update bundle-gnome.
I ran into the same problem upgrading gnome. Do you have any solution 
for it? Shall we open a formal bug tracker item?

TIA,
Remi
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Re: [Fink-users] sawfish installation problem

[Remi Mommsen]

Hi,
You could also build sawfish against control-center2. I have a private 
info file which does this. I use sawfish daily with gnome2 w/o any 
problems. Unfortunately, the maintainer (Daryl Anderman, cc'd) of 
sawfish never responded to my mail (a long time ago and I never 
followed it up).

Cheers,
Remi
On Jun 25, 2004, at 7:10 AM, David R. Morrison wrote:
Kenny:
  If you enable both the stable and unstable trees, you should be able 
to
install control-center-shlibs.

To the Fink Gnome team:
  The old version of control-center, particularly its shlibs splitoffs,
needs to remain available to users.  I would suggest renaming the .info
file for the new version, perhaps to control-center2.info.  The 
alternative
is to create a package for backwards compatibility called
control-center-shlibs.info .  But I'm afraid that if there are still 
things
like sawfish which depend on the old version, it's too early to give up
the headers associated to control-center-shlibs.

  -- Dave
Kenny LU Zhuo Ming [EMAIL PROTECTED] wrote:
Hi,
recently I reinstall my fink, everything goes neat and smooth, until I
want to install sawfish, I hit the
following error,
ZHUO-MING-LUs-Computer:~ luzm$ fink install sawfish
/usr/bin/sudo /sw/bin/fink  install sawfish
Password:
Information about 3268 packages read in 6 seconds.
Failed: Can't resolve dependency control-center-shlibs for package
sawfish-1.3-16 (no matching packages/versions found)
ZHUO-MING-LUs-Computer:~ luzm$ fink list control-center
Information about 3268 packages read in 3 seconds.
  i   control-center2.4.0-6   The
Gnome control center
  i   control-center2-dev   2.4.0-6   The
Gnome control center
  i   control-center2-shlibs2.4.0-6   The
Gnome control center
Why?
Regards,
Kenny

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Re: [Fink-users] strange error message with clamav 0.71-1

[Remi Mommsen]

Hi,
On Jun 4, 2004, at 6:42 AM, Dan Sommers wrote:
On Fri, 4 Jun 2004 09:28:21 -0400,
Alexander K. Hansen [EMAIL PROTECTED] wrote:
On Jun 4, 2004, at 1:43 AM, Dominique Dhumieres wrote:
While scanning files with clamav 0.71-1, I got the following result:
% sudo clamscan -r -i /Users/
ERROR: Please edit the example config file /sw/etc/clamav.conf.
--- SCAN SUMMARY ---
Known viruses: 21773
Scanned directories: 9345
Scanned files: 222104
Infected files: 0
Data scanned: 20420.38 MB
I/O buffer size: 131072 bytes
Time: 6891.963 sec (114 m 51 s)
The error message is new and what I am supposed to do with
/sw/etc/clamav.conf?
Dominique d'Humieres

Here's the answer.  If you look at /sw/etc/clamav.conf, you'll see:
##
## Example config file for the Clam AV daemon
## Please read the clamav.conf(5) manual before editing this file.
##
# Comment or remove the line below.
Example
...
You need to comment out Example, like it says.
I've cc'ed the maintainer as well.  Maybe this should be noted in the
package description, or the edit performed automatically during the
build process.
Count my vote (FWIW) for noting this in the package description.
That message was most likely put there by the author(s) of clamav
to encourage users to examine clamav's output carefully and
RTFM.  IMO, fink should not circumvent that mechanism, but rather
reinforce it.
I just updated clamav to the newest upstream release. I added a 
printout concerning the need to edit %p/etc/clamav.conf to the 
postinstall script. I guess this is more visible than a remark in the 
package description.

Thanks for pointing out the issue.
Cheers,
Remi
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Re: [Fink-users] uninstalling gnome

[Remi Mommsen]

Hi,

On May 13, 2004, at 5:22 PM, Jonathan King wrote:

Hello,

Thank you Alexander for the suggestion. I did just try that method and 
the result is shown below. Suspecting the line indicating that 1 
package would be removed, with a savings of 4KB, I did a fink list -i 
gnome that showed about 50 packages remaining with bundle-gnome 
nowhere to be found. So I did successfully remove bundle-gnome, but 
gnome remains.

I would think that given what appears to be a large push to bring 
gnome to OS X and fink, some of the developers/porters would have 
addressed this! Any other suggestions?
You could install the debfoster package from fink and then run 'sudo 
debfoster'. It will ask you for all packages which are not needed for a 
dependency if you want to keep them. Otherwise they will be removed.

HTH,
Remi
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Re: [Fink-users] fink update-all fails.

[Remi Mommsen]

Hi,

On Apr 30, 2004, at 9:08 AM, lj Palmer wrote:

Error:
$ fink update-all
/usr/bin/sudo /sw/bin/fink  update-all
Information about 3088 packages read in 3 seconds.
Failed: Internal error: node for db42-ssl-shlibs already exists
Using Fink unstable tree
$ fink --version
Package manager version: 0.20.1
Distribution version: 0.7.0.cvs
Mac OSX: 10.3.3
17 1 gHZ iMac
Any Ideas?
Reading the FAQ: 
http://fink.sourceforge.net/faq/comp-general.php?phpLang=en#node-exists

HTH,
Remi
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Re: [Fink-users] optimization question

[Remi Mommsen]

Hi,

On Apr 30, 2004, at 12:58 PM, Daniel Macks wrote:

On Fri, Apr 30, 2004 at 10:52:36AM -0700, Darkwing wrote:
Hey all. I have been using Fink for about 9 months and enjoying it, 
but
it produces some really really slow executables. I decided to start
fresh, and I started editing the .info files to add SetCFLAGS: -fast
-mcpu=7450 and also -fPIC on libraries. This made a HUGE difference
especially in load times.
According to what I've read, position-independent code is the default
(and maybe only?) mode supported by PPC/Darwin, so -fPIC may be a
no-op. But I'm not a gcc expert.
Right. -fPIC is always used in Mac OS X and Darwin (see 'man gcc'), so 
this makes no difference. I do not believe that the -fast switch really 
helps in regards to loading time. It surely speeds up applications 
which are computing intensive. However, some applications do not like 
the aggressive optimization done. They might run, but produce wrong 
numerically results. Therefore, it is dangerous to apply these settings 
blindly.

I believe something else happened when you started fresh: all 
executables are now pre-bound. This speeds up the loading of 
applications quite tremendously, but has nothing to do with compiler 
settings. The problem is that if library A is not pre-bound, any 
executable depending directly or indirectly on A is not pre-bound, too. 
Thus if library A is used by many applications and it is now pre-bound, 
the loading of all these executables is speeded up.

Cheers,
Remi
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Re: [Fink-users] amaya 8.4 fails to compile

[Remi Mommsen]

Hi,

On Apr 22, 2004, at 3:46 AM, Charles McCathieNevile wrote:

I have packageed wchar.h for fink. If you declared it as a dependency 
you
should be able to get things working on 10.2 as well.
I was looking for it, but failed to find it. In which package is it?

TIA,
Remi
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