RE: ACHILLES implementation

Nebraska has not _ James McClay, MD, MS, FACEP, FAMIA Professor, Emergency Medicine University of Nebraska Medical Center jmcc...@unmc.edu From: Gpc-dev On Behalf Of Sravani Chandaka Sent: Thursday, February 25, 2021 5:00 PM To: gpc-dev@listserv.kumc.edu Subje

RE: new COVID query still running

Nebraska ran the query and submitted. We did not have any trouble and the run time was a few hours (3?). _ James McClay, MD, MS, FACEP, FAMIA Professor, Emergency Medicine University of Nebraska Medical Center jmcc...@unmc.edu -Original Message- From:

RE: gpc-dev Mar 31 agenda and meeting notes

As discussed on the call The CD2H COVID Web Site https://covid.cd2h.org/clinical_evidence Organized under the NIH NCATS is attempting to harmonize all the various data sources. _ James McClay, MD, MS, FACEP, FAMIA Professor, Emergency Medicine University of N

RE: Question about CDM archiving

Brian, Nebraska keeps one previous live version and archives the prior one. (ie. The current CDM V51, the prior CDMV41 from July both live and queriable, then we archive the May version off the machine). James McClay, MD, MS, FACEP, FAMIA Professor, Emergency Medicine Chair, UNMC Biomedical In

RE: DROC #53 (Brixner Lung Cancer) [was: gpc-dev 9 Jul ...]

I’m just back from a trip. I suspect we won’t make the July 17 target. James McClay, MD, MS, FACEP, FAMIA Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu www.linkedin.co

RE: de-identified vs LDS

The raw material is listed here https://privacyruleandresearch.nih.gov/pr_08.asp Hopkins IRB has a description https://www.hopkinsmedicine.org/institutional_review_board/hipaa_research/limited_data_set.html I'm sure there are better materials out there. Jim James McClay, MD, MS, FACEP, FAMIA Ass

RE: PCORI_PMP_WP001 report for PCORI final report submission

edu> www.linkedin.com/in/infodoc<http://www.linkedin.com/in/infodoc> Twitter: @UNMCInformatics 402-559-3587 From: Russ Waitman Sent: Monday, June 03, 2019 9:10 AM To: McClay, James C ; Hillary Sandoval ; Mudgapalli, Ashok ; Dan Connolly ; Sravani Chandaka ; GPC-DEV@LISTSERV.KUMC.EDU

RE: PCORI_PMP_WP001 report for PCORI final report submission

Hilary, We're trying. The report you want does not generate in our system. DRN OC utilizes the raw SAS output. We're trying to generate your report without manually parsing 4000 lines from the SAS output. Sorry. James McClay, MD, MS Associate Professor Department of Emergency Medicine University

RE: PCORI_PMP_WP001 report for PCORI final report submission

I don't know about the rest of you but my PDF version of pcoriwp1r01_report is corrupted. It shows two pages of index only. Is there another way to retrieve the data? James McClay, MD, MS Associate Professor Department of Emergency Medicine University of Nebraska Medical Center 981150 Nebraska M

Re: Diabetes query run time

I didn't check our run time but it was less than 5 hours. I launched it at 5 and checked in at 10. Sent from my phone. Please excuse typos. From: Gpc-dev on behalf of Verhagen, Laurel A Sent: Friday, January 11, 2019 10:50:52 AM To: Russ Waitman; gpc-dev@lists

FW: 2018 Learning Engagement Conference and HackathonSix

Here are some information concerning the LEC in December James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu www.linkedin.com/in/infodoc

RE: University of Kansas' r009 approved

Yay! James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu www.linkedin.com/in/infodoc Twitter: @jmcclay 402-55

RE: U of Nebraska's r010 approved

Thanks! James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu www.linkedin.com/in/infodoc Twitter: @jmcclay 402

RE: Feasibility Query: Diabetic Kidney Disease Prediction and Risk Factor Identification with Machine Learning

Mei Liu, When I ran this query I had counts below threshold. Can you contact me to discuss? jm _ James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine University of Nebraska Medical Center jmcc...@unmc.edu From: Gpc-honest-brokers [mailto:gpc-hon

RE: [gpc-informatics] #676: SNOW SHRINE- UNMC production

nfodoc<http://www.linkedin.com/in/infodoc> Twitter: @jmcclay 402-559-3587 From: Pedersen, Jay G Sent: Monday, April 09, 2018 12:49 PM To: Narayana, Yeshwanth R ; m...@wisc.edu; dconno...@kumc.edu; gpc-dev@listserv.kumc.edu Cc: Campbell, James R ; McClay, James C Subject: Re: [gpc-informatics] #676:

RE: UMN SNOW Shrine Maintenance

Thanks! Merry Christmas _ James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine University of Nebraska Medical Center jmcc...@unmc.edu From: Wanta Keith M [mailto:kwa...@uwhealth.org] Sent: Tuesday, December 12, 2017 5:42 PM To: McClay, James C

RE: UMN SNOW Shrine Maintenance

Hi, Any chance you guys can switch Nebraska’s node to production? We’re ready to go (I think?). jm James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu

RE: HackathonFive Registration

Not sure why, but I didn't get the $115 rate online so I called the hotel. James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu www.linkedin.com/i

RE: PCORnet Data Committee Monthly Meeting..Note social determinants survey

I took a look at the survey. I think it needs to be filled out by Mei Liu as she probably understands what they are asking for. jm James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical Center Omaha, NE 68198-1150 j

RE: Running CDM queries for CTSA program to calculate Common Metrics.

Hi Russ, Erica, We're not a CTSA site but I ran the query without trouble (3m 51s) James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu www.link

RE: UT SW Med Ctr's r008 approved

Woot! Woot! James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu www.linkedin.com/in/infodoc Twitter: @jmcclay

RE: [gpc-informatics] #579: Data Characterization - Cycle 3 Tracking

, 2017 9:19 AM To: verhagen.lau...@mcrf.mfldclin.edu; mprit...@kumc.edu; dconno...@kumc.edu; Campbell, James R ; kosin...@mcw.edu; McClay, James C ; hangs...@umn.edu Cc: gpc-dev@listserv.kumc.edu Subject: Re: [gpc-informatics] #579: Data Characterization - Cycle 3 Tracking #579: Data Characterization

RE: GPC Dev Agenda Item 7/11: patient registries

Hi Tamara Just over a year ago Nebraska Medicine changed the Conditions of Treatment form to include consent to be contacted for research. About 2/3 of our patients are opting in. We just finished the policy allowing direct patient contact in that case. The Vice Chancellor of Research Office has

RE: SNOW SHRINE due date?

Is it just Nebraska or is the setup and configuration of the SHRINE node really onerous? Our sysadmin has put in HOURS and isn't finished yet. We didn't budget for all this trouble. Anyone found an easy configuration process? jm From: Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf

RE: nothing on Bariatric study for HackathonFour?

du] Sent: Monday, January 02, 2017 12:44 PM To: McClay, James C Cc: Subject: nothing on Bariatric study for HackathonFour? Jim, I don't see any major tickets on milestone:bariatric-study-data<https://urldefense.proofpoint.com/v2/url?u=https-3A__informatics.gpcnetwork.org_trac_Project_mil

RE: PopMedNet MDQ with Oracle SID

urel A [mailto:verhagen.lau...@mcrf.mfldclin.edu] Sent: Wednesday, December 21, 2016 10:26 AM To: Dan Connolly ; Tim Meyer ; McClay, James C Cc: GPC-DEV@LISTSERV.KUMC.EDU Subject: RE: PopMedNet MDQ with Oracle SID Hi Dan, The Menu-Drive Query that is due today (12/21) was only distributed to Group 2 sites th

RE: PopMedNet MDQ with Oracle SID

Nebraska was getting the same error yesterday. No resolution yet. James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu www.linkedin.com/in/infodoc

question about menu-driven queries in PopMedNet

Hi, At Nebraska, there is concern about setting up PopMedNet to execute SQL against our CDM tables. Are we the only site that hasn't configured PMN to connect to our database? jm James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150

RE: [gpc-informatics] #543: UW Madison Bariatric query age calculation problem.

: GPC Informatics [mailto:d...@madmode.com] Sent: Friday, December 16, 2016 3:39 PM To: McClay, James C ; m...@wisc.edu; dconno...@kumc.edu Cc: tachina...@wisc.edu Subject: Re: [gpc-informatics] #543: UW Madison Bariatric query age calculation problem. #543: UW Madison Bariatric query age

RE: Reminder: PCORnet Data Characterization for your campus is due TOMORROW

Nick, If you are concerned, contact the PCORnet DRN Team pcornet...@popmednet.org. Supposedly, if the PMN request goes away without an error then you've submitted correctly. jm _ James McClay, MD, MS, FACEP Associate Professor,

RE: University of Kansas' r002 approved

Way to go! James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu www.linkedin.com/in/infodoc Twitter: @jmcclay 402-559-3587 -Original Message- From: Gpc-dev [mailt

RE: patient side matching

Agreed, the technology issue isn't difficult. We already let patients subscribe to be notified of potential trials. However, trolling the EHR and contacting patients would be a difficult sell. We would prefer to send a message through the patient portal. I'm part of the HL7 FHIR development pro

FW: Wave 1 individual level query timeline

clay 402-559-3587 From: Arterburn, David [mailto:arterbur...@ghc.org] Sent: Tuesday, September 27, 2016 10:34 AM To: McClay, James C Cc: Anau, Jane ; Buzalko, Russell J Subject: RE: Wave 1 individual level query timeline BTW - Jim, Here is my current list of GPC sites and where they stand... pleas

RE: ALS FRS available at your site?

Tamara, I just confirmed the Nebraska ALS clinic captures the FRS in Epic and updated ticket 380 jm _ James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine University of Nebraska Medical Center jmcc...@unmc.edu From: gpc-honest-brokers-boun...@li

Tuesday GPC-DEV meeting

GPC-DEV'ers I see Dan canceled this week's Tuesday meeting as we agreed last week. Over the weekend Jane Anau from Group Health sent messages to the GPC data marts participating in the Bariatric study indicating they didn't submit query results by the deadline on 8/18. There is still time to sub

Queries coming across PopMedNet

Greetings, This is a screen shot of a table in the weekly PCORnet announcements https://pcornet.imeetcentral.com/pcornetmain/blogentry/46968268/#crg. The fifth one down is the Bariatric study query. The weight cohort in this table is a PCORnet project, not the GPC weight/height cohort. If you p

RE: GPC DEID Data Request: Immunoglobulin G Levels and the pattern of infection

We used LOINC 2465-3 IgG [Mass/volume] in Serum or Plasma. It’s listed as mg/dL. James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu www.linkedi

RE: Bariatric technical specs, functional specs: next steps?

ka Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu<mailto:jmcc...@unmc.edu> www.linkedin.com/in/infodoc<http://www.linkedin.com/in/infodoc> Twitter: @jmcclay 402-559-3587 From: Dan Connolly [mailto:dconno...@kumc.edu] Sent: Monday, May 16, 2016 10:32 AM To: McClay, James C Cc

RE: [gpc-informatics] #473: PCORnet CDMv3 SAS prep-to-research Readiness

AM To: bzscho...@kumc.edu; verhagen.lau...@mcrf.mfldclin.edu; jd...@umn.edu; dconno...@kumc.edu; b...@uthscsa.edu; ngra...@kumc.edu; mprit...@kumc.edu; nate.apa...@cerner.com; mo...@health.missouri.edu; Campbell, James R ; kwa...@uwhealth.org; Mudgapalli, Ashok ; McClay, James C ; m...@wisc.edu; Ped

RE: PCORnet DRN OC update and CDM Implementation Call

Question, Is the GPC participating in the weight cohort study? Our discussion at the Bariatric Kick-off meeting led me to believe that was a completed project. jm James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical

RE: how to transfer oncology registry from CNExT to i2b2? [was: gpc-dev agenda item for 3/8]

Just an FYI, last I knew Nebraska used Metriq for our NAACCR system. James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu www.linkedin.com/in/info

RE: [gpc-informatics] #283: determine GPC funding status for bariatric study

, February 29, 2016 9:11 AM To: bzscho...@kumc.edu; McClay, James C ; dconno...@kumc.edu Cc: rwait...@kumc.edu; Buzalko, Russell J ; sfen...@kumc.edu Subject: Re: [gpc-informatics] #283: determine GPC funding status for bariatric study #283: determine GPC funding status for bariatric study

RE: [gpc-informatics] #283: determine GPC funding status for bariatric study

lto:d...@madmode.com] Sent: Friday, November 13, 2015 4:56 PM To: bzscho...@kumc.edu; McClay, James C ; dconno...@kumc.edu Cc: rwait...@kumc.edu Subject: Re: [gpc-informatics] #283: determine GPC funding status for bariatric study #283: determine GPC funding status for bariatric

GPC Dev call today

Dan, The UNMC team is meeting with the Epic Data Warehouse team today so we won't be able to attend the dev meeting. Hopefully we'll have some interesting ideas to report from this work. jm James McClay, MD jmcc...@unmc.edu 402-559-3587 The information in this e-mail may be privileged and conf

RE: OK to share babel ontologies with selected collaborators from NYC-CDRN, SCILHS CDRNs?

Dan, You will be happy to know its Hubert that is building the NYC i2b2. Perhaps we loop him back in? jm James McClay, MD, MS, FACEP Associate Professor, Emergency Medicine Chair, UNMC Biomedical Informatics Program 981150 Nebraska Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu

RE: Action Needed - PCORI Phase 2 Survey

Hi I filled out the survey (T9MMWLCK) . I suppose some of it is creative writing given their lack of definitions. Patients seen: I ran a count of patient direct patient contact encounters for the year 2014 from i2b2 to get an annual count. I don't know what their population of "high interest" i

RE: [gpc-informatics] #227: Data QA for Breast Cancer Finder File

[mailto:dconno...@kumc.edu] Sent: Monday, June 08, 2015 11:08 AM To: gpc-dev@listserv.kumc.edu; Tamara McMahon; nicholas-rudzian...@uiowa.edu; Jianghua He; e-chrischil...@uiowa.edu; Vincent Leonardo; m...@wisc.edu; verhagen.lau...@mcrf.mfldclin.edu; McClay, James C Cc: Matthew Hoag; bo...@uthscsa.edu

PRO SUrvey URL

Here is the survey URL https://unmcredcap.unmc.edu/redcap/surveys/?s=A8ARFNCT7T Jim James McClay, MS, MD, FACEP Associate Professor, Emergency Medicine Chair, Biomedical Informatics Graduate Program University of Nebraska Medical Center 402-559-3587, jmcc...@unmc.edu _

RE: [gpc-informatics] #240: Data Characterization ETL ADD for phase 1 CDM V1 compliance

Sooo, Excuse my ignorance but how do they define a datamart? Jim James C McClay, MS, MD, FACEP Associate Professor, Emergency Department Chair, Biomedical Informatics Graduate Program University of Nebraska Medical Center Omaha, NE 68198-1150 jmcc...@unmc.edu _

FW: Interest in a Virtual Connectathon for Structured Data Capture

Greetings GPC dev’ers. One of our charges from PCORI is to develop mechanisms for the capture of patient generated data. Our current model is a combination of REDcap questionnaires for unique data capture and delivering patient questionnaires via each sites’ enterprise patient p

RE: General questions about registries

[mailto:dconno...@kumc.edu] Sent: Friday, October 17, 2014 3:09 PM To: McClay, James C; gpc-dev@listserv.kumc.edu Subject: RE: General questions about registries It's sufficiently obvious that our paper was rejected for insufficient novelty. ;-) But that's exactly what the HERON i2b2/RE

General questions about registries

GPC informatics experts: I have a number of investigators requesting the ability to have registry type functionality from our i2b2 environment. I will use COPD for an example but we need a generalizable solution available to any investigative team. They would like to tag patients participating i

RE: Boston eating extablishments

68198-1150 jmcc...@unmc.edu<mailto:jmcc...@unm.edu> From: Campbell, James R Sent: Sunday, July 06, 2014 4:52 PM To: gpc-dev@listserv.kumc.edu; McClay, James C; Russ Waitman Subject: Boston eating extablishments Shawn Murphy recommended a nice looking restaur

RE: gpc-dev 10 June agenda: what's up at your site?

Here is the bullet list from Nebraska 1) To date UNMC has installed Research Copy of Clarity, i2b2 server and created de-identified version of i2b2 that contains demographics, diagnosis, and problem lists. 2) Currently working on loading encounters and observations 3) Procedure data has been extr

RE: [Gpc-dev] gpc-dev weekly teleconference

I'll be late to the development meeting. Sent on the new Sprint Network from my Samsung Galaxy S®4. The information in this e-mail may be privileged and confidential, intended only for the use of the addressee(s) above. Any unauthorized use or disclosure of this information is prohibited. If y

Another Redcap type tool

Are any of you familiar with Eureka from Emory? http://aiw.sourceforge.net/overview.html It looks like a tool similar to Redcap with better i2b2 integration. jm James McClay, MS, MD, FACEP Associate Professor, Emergency Medicine Chair, Biomedical Informatics Graduate Program University of Nebrask

RE: PCORnet: Draft Common Data Model 1.0

I have to echo Ed Hammond's comments about prior work on clinical data elements and acceptable value sets. It doesn't make sense for PCORI to go off and create another ad-hoc data set. As an example we just completed and balloted the HL7 Data Elements for Emergency Department Systems (https://w

Re: [Gpc-dev] Agenda item for tomorrow: Report of DSSNI phone call

Does PCORI publish meeting minutes anywhere? James McClay, MS, MD, FACEP Associate Professor, Emergency Medicine Chair, Biomedical Informatics Graduate Program University of Nebraska Medical Center 402-559-3587, jmcc...@unmc.edu ___ The information in this e-mail is pri

Re: i2b2 hardware infrastructure

sorry, I made that in consultation with Ashok. We were going to start putting the materials there when they came in. thanks for filling it out. James C McClay, MS, MD, FACEP Associate Professor, Emergency Department Chair, Biomedical Informatics Graduate Program

Re: 2014 Epic User Group meeting session

ddressee(s) above. If you have received this e-mail by mistake, please delete it and immediately contact the sender. From: Campbell, James R Sent: Friday, January 31, 2014 11:37 AM To: McClay, James C; Russ Waitman Cc: gpc-dev@listserv.kumc.edu Subject: 2014 Epic User Group meeting session Unf