Messages by Thread
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[Bioc-sig-seq] Running R and Bioconductor on a Computer Cluster in the Cloud - cloudnumbers.com
Markus Schmidberger
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Re: [Bioc-sig-seq] Welcome to the "Bioc-sig-sequencing" mailing list (Digest mode)
20907099
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[Bioc-sig-seq] R package for DGE analysis between multiple RNA-Seq samples
Bruno Zeitouni
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[Bioc-sig-seq] Adjusted p values in edgeR
Sara Hanson
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[Bioc-sig-seq] counting reads for refseq genes
Kunbin Qu
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[Bioc-sig-seq] questions about GenomicFeatures
Kunbin Qu
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[Bioc-sig-seq] Correction: EdgeR common libary size and normalized counts.
yifang tan
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[Bioc-sig-seq] seqselect using GRanges object on multiple chromosomes
Janet Young
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[Bioc-sig-seq] edgeR common library size question.
yifang tan
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[Bioc-sig-seq] EdgeR
yifang tan
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[Bioc-sig-seq] Cannot use Views on a DNAString object on R 2.14.0devel
Leonardo Collado Torres
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[Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values
Janet Young
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[Bioc-sig-seq] "identical" on PhredQuality objects - I'm confused
Janet Young
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[Bioc-sig-seq] roast/romer for count data (edgeR)?
Gordon K Smyth
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[Bioc-sig-seq] graph package conflict with rtracklayer
Cook, Malcolm
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[Bioc-sig-seq] Questions on doing EdgeR Analysis of Timeseries Data
Lawson, Mark (mjl3p)
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[Bioc-sig-seq] BSgenome<-seqinfo undefined woes
Cook, Malcolm
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[Bioc-sig-seq] EdgeR Questions regarding prior.n tagwise dispersion
Mads Sønderkær
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[Bioc-sig-seq] Like subseq() but with the ability to accept a vector of starts
Ivan Gregoretti
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[Bioc-sig-seq] re-ordering the sequence from ShortRead
Kunbin Qu
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[Bioc-sig-seq] rtracklayer BUG!? import.bed pastes/prefixes 'chr' during import of SOME records
Cook, Malcolm
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[Bioc-sig-seq] transforming bam for TEQC
David A.
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[Bioc-sig-seq] about dataset in edgeR
gregory voisin
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[Bioc-sig-seq] Creating A TranscriptDb
Dario Strbenac
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[Bioc-sig-seq] shortRead qa() minor bug
Marcus Davy
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[Bioc-sig-seq] ShortRead, feature request (if not a bug report)
Ivan Gregoretti
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[Bioc-sig-seq] Package ShortRead: occurenceFilter and chromosomeFilter("NM")
Ivan Gregoretti
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[Bioc-sig-seq] interaction factor in edgeR
Gordon K Smyth
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[Bioc-sig-seq] understanding memory size of AlignedRead objects
Janet Young
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[Bioc-sig-seq] Package affy and its depencies
Ivan Gregoretti
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[Bioc-sig-seq] interaction factor in edgeR
Biase, Fernando
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[Bioc-sig-seq] weighted coverage on GRanges object
Janet Young
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[Bioc-sig-seq] BioC 2011 -- Where Software and Biology Connect, Seattle, WA July 28-29
Martin Morgan
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[Bioc-sig-seq] srapply / as.list / multicore weird interaction
Janet Young
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[Bioc-sig-seq] Spike-in control dataset from RNA-Seq?
Jason Lu
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[Bioc-sig-seq] Bioconductor 2.8 is released
Dan Tenenbaum
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[Bioc-sig-seq] Extracting data from SimpleRleViewsList
Lakshmanan Iyer
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[Bioc-sig-seq] Howto "inject" indels?
Nicolas Delhomme
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[Bioc-sig-seq] countOverlaps throws error on GRangesList and GappedAlignments
Lakshmanan Iyer
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[Bioc-sig-seq] A question of edgeR DGEList() - no norm.factors generated
Kyunghee Park
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[Bioc-sig-seq] Re(surrecting): Rsamtools countBam labeling
Cook, Malcolm
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[Bioc-sig-seq] generic for strand in genomeIntervals and GenomicRanges
Julien Gagneur
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[Bioc-sig-seq] rna-seq: gene correlation
João Moura
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[Bioc-sig-seq] filtering by adapters in QA report
Michael Lawrence
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[Bioc-sig-seq] mapply with GRangesList
Dario Strbenac
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[Bioc-sig-seq] readFastq() error
joseph
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[Bioc-sig-seq] ChIPpeakAnno Causes GenomicRanges Package Error
Dario Strbenac
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[Bioc-sig-seq] ChIPpeakAnno Error when Strand is *
Dario Strbenac
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[Bioc-sig-seq] extract 3UTR using GenomicFeatures package
Jason Lu
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[Bioc-sig-seq] countOverlaps With GRangesList
Dario Strbenac
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[Bioc-sig-seq] BioC 2.8 New Package Submission Deadline - 3/23/2011
Wong, Chao-Jen
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[Bioc-sig-seq] edgeR package: install on Linux
Jean-Paul Bouchet
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[Bioc-sig-seq] BED file parser
Thiago Yukio Kikuchi Oliveira
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[Bioc-sig-seq] Bioconductor approach to Circos
Ivan Gregoretti