Messages by Date
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2018/04/09
Re: [R-sig-phylo] "Not of class phylo" error when lapply is used
jschenk
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2018/04/09
Re: [R-sig-phylo] "Not of class phylo" error when lapply is used
Emmanuel Paradis
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2018/04/09
Re: [R-sig-phylo] "Not of class phylo" error when lapply is used
Liam J. Revell
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2018/04/09
[R-sig-phylo] "Not of class phylo" error when lapply is used
jschenk
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2018/04/07
[R-sig-phylo] quantitative state dependent diversification of another quantitative trait (Zach Culumber)
krzysztofbartoszek
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2018/04/05
Re: [R-sig-phylo] quantitative state dependent diversification of another quantitative trait
Zach Culumber
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Masahito Tsuboi
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Marguerite Butler
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2018/04/04
Re: [R-sig-phylo] quantitative state dependent diversification of another quantitative trait
Julien Clavel
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2018/04/04
Re: [R-sig-phylo] quantitative state dependent diversification of another quantitative trait
Brian O'Meara
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Brian O'Meara
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Brian O'Meara
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Liam J. Revell
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Jacob Berv
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Rafael S Marcondes
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
William Gearty
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2018/04/04
[R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Rafael S Marcondes
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2018/04/04
[R-sig-phylo] quantitative state dependent diversification of another quantitative trait
Zach Culumber
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2018/03/28
Re: [R-sig-phylo] Detection association between traits
Joe Felsenstein
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2018/03/22
Re: [R-sig-phylo] correlation of binary and multistate
Arbuckle Kevin .
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2018/03/21
Re: [R-sig-phylo] correlation of binary and multistate
Brian O'Meara
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2018/03/21
[R-sig-phylo] correlation of binary and multistate
John Denton
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2018/03/20
[R-sig-phylo] Help for QuaSSE analysis (diversitree)
Charles Pouchon
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2018/03/20
[R-sig-phylo] Plot interactions which are fitted by PGLS models.
Long, X.
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2018/03/19
[R-sig-phylo] correlation of characters from stochastic maps
John Denton
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2018/03/13
Re: [R-sig-phylo] plot.cophylo: some edges missing
Juan Antonio Balbuena
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2018/03/13
Re: [R-sig-phylo] plot.cophylo: some edges missing
Liam J. Revell
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2018/03/13
Re: [R-sig-phylo] plot.cophylo: some edges missing
Juan Antonio Balbuena
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2018/03/13
Re: [R-sig-phylo] plot.cophylo: some edges missing
Liam J. Revell
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2018/03/13
[R-sig-phylo] plot.cophylo: some edges missing
Juan Antonio Balbuena
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2018/03/12
Re: [R-sig-phylo] Phylogenetic PCA and measurement error
Rafael S Marcondes
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2018/03/12
Re: [R-sig-phylo] Phylogenetic PCA and measurement error
Liam J. Revell
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2018/03/12
Re: [R-sig-phylo] Phylogenetic PCA and measurement error
Graham Slater
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2018/03/12
Re: [R-sig-phylo] Phylogenetic PCA and measurement error
Joe Felsenstein
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2018/03/11
Re: [R-sig-phylo] Phylogenetic PCA and measurement error
Liam J. Revell
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2018/03/11
[R-sig-phylo] Phylogenetic PCA and measurement error
Rafael S Marcondes
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2018/03/06
[R-sig-phylo] Some questions about PGLS analysis in 'caper' in R
Long, X.
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2018/02/23
[R-sig-phylo] problem matching data and tip.labels
Bianca A Santini Gonzalez
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2018/02/20
Re: [R-sig-phylo] Mean of Phenogram Through Time
William Gearty
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2018/02/20
Re: [R-sig-phylo] Mean of Phenogram Through Time
William Gearty
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2018/02/20
Re: [R-sig-phylo] problem with phylo.toBackbone
Liam J. Revell
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2018/02/20
Re: [R-sig-phylo] problem with phylo.toBackbone
Liam J. Revell
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2018/02/20
[R-sig-phylo] problem with phylo.toBackbone
Felipe Rossetto
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2018/02/20
[R-sig-phylo] Spider 1.5.0 released
Rupert Collins
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2018/02/19
Re: [R-sig-phylo] Suggestion for update of as.igraph.phylo
Watal M. Iwasaki
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2018/02/19
Re: [R-sig-phylo] Suggestion for update of as.igraph.phylo
Emmanuel Paradis
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2018/02/14
Re: [R-sig-phylo] importing trees from birdtree.org into R
Agus Camacho
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2018/02/13
[R-sig-phylo] Suggestion for update of as.igraph.phylo
Watal M. Iwasaki
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2018/02/13
Re: [R-sig-phylo] importing trees from birdtree.org into R
Upham, Nathan
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2018/02/13
[R-sig-phylo] Mean of Phenogram Through Time
William Gearty
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2018/02/13
Re: [R-sig-phylo] importing trees from birdtree.org into R
Agus Camacho
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2018/02/13
Re: [R-sig-phylo] importing trees from birdtree.org into R
Klaus Schliep
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2018/02/13
[R-sig-phylo] importing trees from birdtree.org into R
Agus Camacho
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2018/02/12
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 121, Issue 2
Martin Smith
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2018/02/09
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 121, Issue 2
Eduardo Ascarrunz
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2018/02/09
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 121, Issue 2
Matthews, Luke
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2018/02/08
Re: [R-sig-phylo] Maximum likelihood time-scaling
Emmanuel Paradis
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2018/02/08
[R-sig-phylo] Not inferring homology within "absence" state in phylogenetic analysis
Roland Sookias
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2018/02/07
[R-sig-phylo] Maximum likelihood time-scaling
Santiago Claramunt
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2018/01/30
[R-sig-phylo] error with QuaSSE linear function for simulations
Elizabeth Christina Miller
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2018/01/20
Re: [R-sig-phylo] Specifying a polytomy at the root with no outgroup
Yan Wong
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2018/01/20
Re: [R-sig-phylo] Specifying a polytomy at the root with no outgroup
Emmanuel Paradis
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2018/01/19
[R-sig-phylo] Specifying a polytomy at the root with no outgroup
Yan Wong
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2018/01/11
[R-sig-phylo] ML tree search using continuous characters
William Gelnaw
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2018/01/11
[R-sig-phylo] rayDISC model not running in corHMM
Arbuckle Kevin .
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2018/01/04
[R-sig-phylo] plotting geologic time scale on circular tree
roee maor
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2018/01/03
Re: [R-sig-phylo] plotting geologic time scale on circular tree
Liam J. Revell
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2018/01/03
Re: [R-sig-phylo] plotting geologic time scale on circular tree
Liam J. Revell
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2018/01/03
[R-sig-phylo] plotting geologic time scale on circular tree
Jacob Berv
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2017/12/23
Re: [R-sig-phylo] color edges of internal nodes with a single child
Emmanuel Paradis
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2017/12/23
Re: [R-sig-phylo] color edges of internal nodes with a single child
Emmanuel Paradis
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2017/12/20
[R-sig-phylo] color edges of internal nodes with a single child
Walter, Mathias
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2017/12/18
Re: [R-sig-phylo] threshDIC value error: Inf for DIC Values
David Bapst
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2017/12/18
[R-sig-phylo] threshDIC value error: Inf for DIC Values
Aja Carter
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2017/12/15
Re: [R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model?
Klaus Schliep
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2017/12/15
Re: [R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model?
Cecile Ane
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2017/12/15
Re: [R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model?
Max Farrell
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2017/12/15
Re: [R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model?
Cecile Ane
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2017/12/15
[R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model?
Max Farrell
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2017/12/14
Re: [R-sig-phylo] Will phyloXML in R be useful?
George Vega Yon
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2017/12/14
Re: [R-sig-phylo] Will phyloXML in R be useful?
Hilmar Lapp
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2017/12/14
Re: [R-sig-phylo] Will phyloXML in R be useful?
George Vega Yon
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2017/12/14
[R-sig-phylo] PhD studentship in evolutionary anthropology
STREET, SALLY E.
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2017/12/13
Re: [R-sig-phylo] Will phyloXML in R be useful?
George Vega Yon
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2017/12/12
Re: [R-sig-phylo] Will phyloXML in R be useful?
Daniel Fulop
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2017/12/12
[R-sig-phylo] Will phyloXML in R be useful?
George Vega Yon
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2017/12/08
[R-sig-phylo] Ape
pascal de Clarens
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2017/12/07
[R-sig-phylo] tidytree package
Yu, Guangchuang
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2017/12/07
Re: [R-sig-phylo] ape
Emmanuel Paradis
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2017/12/07
[R-sig-phylo] ape
pascal de Clarens
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2017/12/03
Re: [R-sig-phylo] RMesquite package
Ayelet Salman
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2017/12/01
Re: [R-sig-phylo] RMesquite package
Hilmar Lapp
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2017/11/30
[R-sig-phylo] Shimodaira-Hasegawa test using per site log likelihood
Felipe Rossetto
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2017/11/28
[R-sig-phylo] Threshold DIC Value Error - Inf for DIC values
Aja Carter
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2017/11/15
[R-sig-phylo] Evolution 2018 symposium on PCM advances
Antigoni Kaliontzopoulou
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2017/11/11
Re: [R-sig-phylo] Error in plotTree.wBars() in phytools
Liam J. Revell
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2017/11/11
Re: [R-sig-phylo] Error in plotTree.wBars() in phytools
Rafael S Marcondes
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2017/11/10
Re: [R-sig-phylo] Error in plotTree.wBars() in phytools
Liam J. Revell
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2017/11/10
Re: [R-sig-phylo] Error in plotTree.wBars() in phytools
Liam J. Revell
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2017/11/10
[R-sig-phylo] Error in plotTree.wBars() in phytools
Rafael S Marcondes
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2017/11/09
[R-sig-phylo] keeping node attributes when reading and writing nexus files
Julie Lee-Yaw
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2017/11/02
Re: [R-sig-phylo] paste() hangs R
Emmanuel Paradis
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2017/10/31
[R-sig-phylo] paste() hangs R
Andreas Kolter
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2017/10/30
Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment
Vojtěch Zeisek
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2017/10/30
Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment
Andreas Kolter
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2017/10/30
Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment
Vojtěch Zeisek
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2017/10/27
Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment
Matthew Van Dam
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2017/10/27
Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment
Vojtěch Zeisek
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2017/10/27
Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment
Emmanuel Paradis
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2017/10/27
Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment
Vojtěch Zeisek
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2017/10/27
Re: [R-sig-phylo] Removing columns containing "N" in DNA alignment
Andreas Kolter
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2017/10/27
[R-sig-phylo] Removing columns containing "N" in DNA alignment
Vojtěch Zeisek
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2017/10/24
[R-sig-phylo] Unable to install ape on R-devel?
David Bapst
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2017/10/20
Re: [R-sig-phylo] Why does ace set a random number generator seed?
David Bapst
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2017/10/20
Re: [R-sig-phylo] Brownian Evolution
Liam J. Revell
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2017/10/20
Re: [R-sig-phylo] Why does ace set a random number generator seed?
Emmanuel Paradis
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2017/10/19
[R-sig-phylo] Brownian Evolution
William Gelnaw
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2017/10/19
[R-sig-phylo] Why does ace set a random number generator seed?
David Bapst
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2017/10/17
Re: [R-sig-phylo] installing a testing version of ape
Elizabeth Purdom
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2017/10/17
Re: [R-sig-phylo] installing a testing version of ape
Emmanuel Paradis
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2017/10/17
Re: [R-sig-phylo] installing a testing version of ape
Elizabeth Purdom
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2017/10/17
Re: [R-sig-phylo] installing a testing version of ape
Emmanuel Paradis
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2017/10/17
[R-sig-phylo] installing a testing version of ape
Elizabeth Purdom
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2017/10/12
[R-sig-phylo] UK.PhylogenticDataAnalysisUsingR.Paradis.Jan28-Feb2
Oliver Hooker
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2017/10/09
Re: [R-sig-phylo] Using Phylogenetic Signal
Theodore Garland
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2017/10/09
[R-sig-phylo] Using Phylogenetic Signal
William Gelnaw
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2017/10/09
Re: [R-sig-phylo] predict using the PGLS model output
Cecile Ane
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2017/10/09
[R-sig-phylo] predict using the PGLS model output
Clara Grilo
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2017/10/08
[R-sig-phylo] question-state code change and simmap
Felipe Rossetto
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2017/10/04
[R-sig-phylo] Postdoc in R phylogenetics
Liam J. Revell
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2017/09/26
Re: [R-sig-phylo] Can I get coordinates from plot.phylo and not get blank page
Liam J. Revell
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2017/09/26
Re: [R-sig-phylo] Can I get coordinates from plot.phylo and not get blank page
Emmanuel Paradis
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2017/09/26
Re: [R-sig-phylo] Can I get coordinates from plot.phylo and not get blank page
Rafael Maia
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2017/09/26
Re: [R-sig-phylo] Can I get coordinates from plot.phylo and not get blank page
Emmanuel Paradis
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2017/09/26
[R-sig-phylo] Can I get coordinates from plot.phylo and not get blank page
Elizabeth Purdom
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2017/09/26
[R-sig-phylo] RES: Converting from data frame or a list of data frames to a DNAbin
Thiago A . Leão-Pires
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2017/09/22
Re: [R-sig-phylo] Confidence intervals for B in ape::binaryPGLMM
Wouter van der Bijl
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2017/09/22
Re: [R-sig-phylo] Confidence intervals for B in ape::binaryPGLMM
Emmanuel Paradis
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2017/09/21
[R-sig-phylo] Converting from data frame or a list of data frames to a DNAbin
Thiago A . Leão-Pires
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2017/09/19
[R-sig-phylo] Confidence intervals for B in ape::binaryPGLMM
Wouter van der Bijl
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2017/09/18
[R-sig-phylo] estimating speciation rates at nodes
Pavel Škaloud
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2017/09/13
Re: [R-sig-phylo] RMesquite package
Hilmar Lapp
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2017/09/13
[R-sig-phylo] RMesquite package
Ayelet Salman
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2017/09/08
Re: [R-sig-phylo] Possible Bug in ape::read.tree
Emmanuel Paradis
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2017/09/07
Re: [R-sig-phylo] Possible Bug in ape::read.tree
George Vega Yon
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2017/09/05
Re: [R-sig-phylo] Possible Bug in ape::read.tree
Klaus Schliep
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2017/09/05
Re: [R-sig-phylo] Possible Bug in ape::read.tree
Liam J. Revell
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2017/09/05
Re: [R-sig-phylo] Possible Bug in ape::read.tree
George Vega Yon
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2017/09/05
Re: [R-sig-phylo] Possible Bug in ape::read.tree
Mario José Marques-Azevedo
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2017/09/05
[R-sig-phylo] Possible Bug in ape::read.tree
George Vega Yon
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2017/08/30
Re: [R-sig-phylo] Simulating traits with different rates of evolution
Liam J. Revell
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2017/08/30
[R-sig-phylo] Simulating traits with different rates of evolution
Alejandro Gonzalez Voyer
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2017/08/28
[R-sig-phylo] counting parallel mutations in ancestral reconstructions
Read, Timothy D
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2017/08/25
Re: [R-sig-phylo] Mapping complex characters
Julien CLAUDE
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2017/08/25
Re: [R-sig-phylo] Mapping complex characters
Robin van Velzen
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2017/08/23
Re: [R-sig-phylo] Mapping complex characters
Julien CLAUDE
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2017/08/23
[R-sig-phylo] Mapping complex characters
Robin van Velzen
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2017/08/15
[R-sig-phylo] Interpretation of lambda=1 (measurement error?)
Rafael S Marcondes
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2017/08/11
Re: [R-sig-phylo] OUwie and simmap trees constructed from prior probabilities of tip states
Liam J. Revell
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2017/08/11
[R-sig-phylo] OUwie and simmap trees constructed from prior probabilities of tip states
Marko Djurakic
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2017/08/07
Re: [R-sig-phylo] tip labels-stochastic mapping
Liam J. Revell
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2017/08/06
[R-sig-phylo] tip labels-stochastic mapping
Felipe Rossetto
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2017/08/04
Re: [R-sig-phylo] phylogenetic signal with sample sizes but no standard errors
Emmanuel Paradis
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2017/08/04
Re: [R-sig-phylo] phylogenetic signal with sample sizes but no standard errors
Joe Felsenstein
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2017/08/03
Re: [R-sig-phylo] Frequency histograms in APE
Emmanuel Paradis
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2017/08/03
[R-sig-phylo] new version of ape
Emmanuel Paradis
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2017/08/02
Re: [R-sig-phylo] phylogenetic signal with sample sizes but no standard errors
Theodore Garland
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2017/08/02
[R-sig-phylo] Phylogenetic quantile regression
briansedio
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2017/08/02
[R-sig-phylo] phylogenetic signal with sample sizes but no standard errors
Vincenzo Ellis
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2017/08/02
[R-sig-phylo] Frequency histograms in APE
LUCAS A. (599841)
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2017/07/28
[R-sig-phylo] Phylogenetic circular regression
Lucas Jardim
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2017/07/27
Re: [R-sig-phylo] phylogenetic circular linear regression
Peter Smits
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2017/07/27
Re: [R-sig-phylo] selecting a set of incongruent trees from a posterior distribution
Jesse Delia
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2017/07/27
Re: [R-sig-phylo] phylogenetic circular linear regression
Florian Boucher
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2017/07/27
Re: [R-sig-phylo] phylogenetic circular linear regression
Florian Boucher
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2017/07/27
[R-sig-phylo] phylogenetic circular linear regression
f.k...@mailbox.org
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2017/07/26
Re: [R-sig-phylo] Function to Extend Tips?
Joseph W. Brown
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2017/07/26
Re: [R-sig-phylo] Function to Extend Tips?
William Gearty
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2017/07/26
Re: [R-sig-phylo] Function to Extend Tips?
Joseph W. Brown
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2017/07/26
Re: [R-sig-phylo] Function to Extend Tips?
William Gearty
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2017/07/26
Re: [R-sig-phylo] selecting a set of incongruent trees from a posterior distribution
Jarrod Hadfield
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2017/07/26
Re: [R-sig-phylo] Function to Extend Tips?
Joseph W. Brown
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2017/07/26
Re: [R-sig-phylo] Function to Extend Tips?
David Bapst
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2017/07/26
Re: [R-sig-phylo] selecting a set of incongruent trees from a posterior distribution
Klaus Schliep
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2017/07/26
Re: [R-sig-phylo] selecting a set of incongruent trees from a posterior distribution
Santiago Sánchez
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2017/07/26
Re: [R-sig-phylo] selecting a set of incongruent trees from a posterior distribution
Eduardo Ascarrunz
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2017/07/25
[R-sig-phylo] selecting a set of incongruent trees from a posterior distribution
Jesse Delia
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2017/07/23
Re: [R-sig-phylo] comparing rates of evolution of a phenotypic trait among clades
Theodore Garland
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2017/07/23
Re: [R-sig-phylo] comparing rates of evolution of a phenotypic trait among clades
Julien Clavel
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2017/07/22
Re: [R-sig-phylo] comparing rates of evolution of a phenotypic trait among clades
Liam J. Revell
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2017/07/22
Re: [R-sig-phylo] comparing rates of evolution of a phenotypic trait among clades
Karla Shikev
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2017/07/22
Re: [R-sig-phylo] comparing rates of evolution of a phenotypic trait among clades
Liam J. Revell
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2017/07/22
[R-sig-phylo] comparing rates of evolution of a phenotypic trait among clades
Karla Shikev
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2017/07/21
[R-sig-phylo] Function to Extend Tips?
William Gearty
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2017/07/17
Re: [R-sig-phylo] How to incorporate intraspecific variation in MCMCglmm
Jarrod Hadfield
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2017/07/14
Re: [R-sig-phylo] How to incorporate intraspecific variation in MCMCglmm
Jarrod Hadfield
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2017/07/14
[R-sig-phylo] How to incorporate intraspecific variation in MCMCglmm
Diogo B. Provete
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2017/07/12
[R-sig-phylo] Test statistic
Valentine Usongo
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2017/07/11
[R-sig-phylo] changes in results of OUwie
Diego Salazar Tortosa
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2017/07/10
[R-sig-phylo] Ann: Advanced course on Model Based Statistical Inference in Biogeography, Dec 11-15, Barcelona (Spain)
Soledad De Esteban-Trivigno