to that Redcap project. Or am I completely missing
something ?
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.
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:
Keywords: all-sites | Blocked By: 597
Blocking:|
--+
Comment (by gkowalski):
Uploaded crosswalk file to secureflles site . Done
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}}}
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sted to make sure
your spoke is returning a cohort. Feel free to schedule time with Keith
Wanta (kwa...@uwhealth.org) on or after June 8 to test your spoke.
--
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|
-+-
Comment (by kwanta):
Cutover for the public cert on the production hub is at 5pm tonight.
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C ticket when you have tested to make sure
your spoke is returning a cohort. Feel free to schedule time with Keith
Wanta (kwa...@uwhealth.org) on or after June 8 to test your spoke.
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rge, I see you got it done within two weeks of when we assigned it to
you; did it take you more than 2 hours? More than 4 hours?
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3. Upload these files using https://securefiles.kumc.edu/ ; address the
submission to `lpa...@kumc.edu, badaga...@kumc.edu`
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with other geocoding work.
-- Mei
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efresh Dates:
Query Distribution: July 5
Query Due Date: July 31
Second Refresh Dates:
Query Distribution: ~Early October
Query Due Date: TBD
*Dates current as of PCORnet DRN OC Forum 2/6/17
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Comment (by dconnolly):
date updates from LV
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IVF.
Provided feedback on the order of Data Checks/Tables as the Exception
Summary is in a different order than data are reported.
Recommended Table IA be updated to add value "NI."
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final” (ok, nothing is every truly final, but still, no
longer “draft”) details on the data pull in the next couple of days.
"
Once we receive the details, we at KUMC can prototype and present to other
sites.
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to this ticket?
Thanks!
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c-dev/2017q4/004314.html SNOW
Shrine Ontology]
\\Andrew Hangsleben hangs008 at umn.edu
\\Tue Oct 3 14:04:22 CDT 2017
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on a GPC REDCap submission destination
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.
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,
NextDcodeForTable1_StudysampleAndPregnancyExclusion-2017-08-22-AF.sql
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ned
* resolution: fixed =>
* milestone: data-domains2 => snow-shrine-1
Comment:
See ticket:411#comment:2
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is now automatically computed. Drag the
item to the query window and set date constraints.
}}}
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then, with SHRINE prep for the LEC and such, it's a stretch.
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=> closed
* resolution: => wontfix
Comment:
This isn't available in the SHRINE demographics ontology (#525), so I
infer we don't plan to support it.
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cket URL:
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://www.dropbox.com/s/oc56lvqi7jvftp8/scilhs_meds_mods.zip?dl=0
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, MCW, UTSW, IU, KUMC), let's track
the others separately:
- MU #641
- UNMC #642
- UMN #643
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]._%' and PX_TYPE = '09') or (PX like '1%' and PX_TYPE =
'10') or (PX like '59[0-9][0-9][0-9]' and PX_TYPE='CH')
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it is unlikely we are going to be
able to turn this around by 9/5.
I will keep everyone updated on our progression.
Dan H.
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confusion. Please see
attachment.
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ent:
Phillip to write an email and a few queries that show how to make use of
modifiers and send that to gpc-dev for Jim Campbell’s evaluation.
per Nov 21 call #12
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Batch modification to #583, #120, #23, #229 by dconnolly:
priority to minor
Comment:
focus on Demographics, Diagnoses, Procedures, and Medications for now
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st of hiding
them (and postponing support) is about one SQL update statement.
I suppose the next step is to look into the benefits of supporting them
and then consider the costs...
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omehow particularly onerous.
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fied SHRINE ontology queries available
across procedure and diagnosis domains early and then improve on that.
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Grea
's see if calling it done
sticks...
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. The trouble with querying our site
was some one elses upstream cert , which was fixed. Case closed.
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(by dconnolly):
* priority: minor => major
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Standardized Vocabularies Drug Domain]
Here's hoping for time to ask them if they have a hierarchical form or
experience putting it into i2b2.
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efault.
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in the DCQA. I mapped all of them to 'OT' in our PRESCRIBING
table and reran the SAS dataset load.
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were not in synch with what is accepted as
valid by the DCQA code. Only by pulling up the sas tables in \dmlocal\
did I verify the units and route codes that the DCQA accepted as valid.
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from CRAN)
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need to be installed we should be able to update our R
instances.
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By: | Blocking:
--+---
Two SAS PROCs for 1) loading of SAS datasets from CDMV41 tables and
2)correcting date/time formats to meet SAS specs.
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share the code; so this is done.
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@… (added)
Comment:
trac isn't smart enough to understand what just `gpc-dev` means in the cc
field. It has to be spelled out in full.
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| Resolution:
Keywords:| Blocked By:
Blocking:|
--+
Changes (by dconnolly):
* cc: gpc-dev (removed)
* cc: gpc-dev@… (added)
--
Ticket URL:
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Keywords: | Blocked By:
Blocking: |
-+---
Changes (by campbell):
* status: assigned => closed
* resolution: => fixed
--
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Keywords: language, cdm | Blocked By:
Blocking: |
---+
Changes (by campbell):
* status: new => closed
* resolution: => fixed
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: | Blocked By:
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---+
Comment (by jmcclay):
UNMC needs to know more about R configuration requirements.
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.
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with embedded SQL commands.
To prepare for this study, we need to assess which sites have CDM data in
Oracle/SQL database and are able to run R code.
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rom Oracle is working
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rr.* from RXCUI_RELATIONSHIPS rr where rr.RXCUI=215568 and
rr.RELATION_TYPE in ('SCD','SBD','GPCK','BPCK') order by relation_type
would indicate the RxCUI codes for the orderable drug Tylenol.
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_basecode from pcornet_labs where
c_basecode like 'LOINC:%'
and c_fullname like '\PCORI\LAB_RESULT_CM\LAB_LOINC%')
and c_basecode not like 'LOINC:LP%’;
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-sharing | Resolution:
Keywords: aki cdm | Blocked By:
Blocking:|
--+
Changes (by xsong):
* reporter: xsong => meiliu
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ps://github.com/kumc-bmi/AKI_CDM or
xsong's branch: https://github.com/sxinger/AKI_CDM
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?
Do we want to convert to the 3-digit model that will be CDM compliant?
Is this interpreted as separate from our existing Demographic / Language
field?
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(by dconnolly):
Note in ticket:411#comment:18 suggestion for all SNOW sites to submit lab
frequency info.
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t; 0.1%||661 ||
86.9% ||
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) :
Column `expos_daily` must be length 0 (the number of rows) or one, not 2
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in mutate_impl(.data, dots) :
> Column `expos_daily` must be length 0 (the number of rows) or one, not
2
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Greate
s 479-551 (AKI_CDM_EXT_VALID_p1_QA.Rmd)
> Error in mutate_impl(.data, dots) :
> Evaluation error: object '2' not found.
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s'.)
>
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| Blocked By:
Blocking: |
---+---
Comment (by lv):
Account needed for Steffani Roush - roush.steff...@marshfieldresearch.org
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een
dateadd(day,-30,pat.ADMIT_DATE) and
pat.DISCHARGE_DATE order by PATID, ENCOUNTERID, RXNORM_CUI, RX_START_DATE
(Invalid object name '#AKI_onsets'.)
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(AKI_CDM_EXT_VALID_p1_QA.Rmd)
Error in mutate_impl(.data, dots) :
Evaluation error: object '2' not found.
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/711#comment:20>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network -
c/Project/ticket/714#comment:8>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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are ready to be tested.
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/711#comment:27>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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/2012 0:00 3/31/2014
0:00
NN BCBS NETWORK BLUE BCBS6 4/1/2014 0:00 (null)
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/715#comment:26>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network -
>
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Ticket URL:
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gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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http://l
er the JVM reaches the heap size limit. If that occurs, site
can decide to restrict collection window by resetting `start_date` and
`end_date` (e.g. start_date = "2014-01-01")
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/711#comment:28>
gpc-informatics <http
ket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/718#comment:2>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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By:
Blocking: |
---+
Changes (by dconnolly):
* cc: gpc-dev (removed)
* cc: gpc-dev@… (added)
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/719#comment:1>
gpc-informatics <http://informatics.gpcnetwork.org/
6366627 100%
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Ticket URL:
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ttp://informatics.gpcnetwork.org/trac/Project/ticket/711#comment:17>
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Greater Plains Network - Informatics
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ter-based
financial class. We will follow up on the KUMC code and this ask during
Oct. 9th GPC-dev call.
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/715#comment:19>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Networ
rk.org/trac/Project/ticket/715#comment:18>
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billing should contact me for a copy of the SQL.
Jim Campbell
campb...@unmc.edu
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/715#comment:16>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network -
URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/715#comment:13>
gpc-informatics <http://informatics.gpcnetwork.org/>
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