On 11/25/2013 05:35 PM, Angel Herráez wrote:
>> That would be tricky to do without going into the JSmol code
>> and changing it directly. Do so only if you do not worry about future
>> JSmol updates.
>
> It should be possible to chenge that using a CSS rule that overrides
> what is set in source co
> That would be tricky to do without going into the JSmol code
> and changing it directly. Do so only if you do not worry about future
> JSmol updates.
It should be possible to chenge that using a CSS rule that overrides
what is set in source code. You just need to identify the ID of the
eleme
On 11/25/2013 05:14 PM, Robert Hanson wrote:
> These are really just for debugging. Is there anything there you really
> need to see? They are supposed to be just for a bit of debugging -- I don't
> recommend them for production.
>
The reason why I wanted to activate the messages (especially for
p
These are really just for debugging. Is there anything there you really
need to see? They are supposed to be just for a bit of debugging -- I don't
recommend them for production.
Not so easy to modify, as ClazzLoaderProgressMonitor (in j2sjmol.js) is
loaded only if necessary, specifically before t
Hi all,
if you set 'disableJ2SLoadMonitor' to "false" in 'Info' some messages
are displayed at the left bottom of the browser window while JSmol is
loaded. Unfortunately these messages are unreadable if there is some
other text at the same position. This happens because the background of
Thanks for letting me know about that, George. Easy fix. I just forgot to
implement stereo.
see http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.15.zip
On Thu, Nov 14, 2013 at 4:53 AM, lisensky wrote:
> Has anybody made the stereo command work in jsmol?
>
> I get black at the bottom
Ah, probably forgot to check that
On Thu, Nov 14, 2013 at 4:53 AM, lisensky wrote:
> Has anybody made the stereo command work in jsmol?
>
> I get black at the bottom and squished panes at the top.
> The redblue and redcyan stereo works fine but plain stereo does not.
> Java jmol does not h
Has anybody made the stereo command work in jsmol?
I get black at the bottom and squished panes at the top.
The redblue and redcyan stereo works fine but plain stereo does not.
Java jmol does not have this problem.
It looks like the vertical value of the stereo wind
>ps -- it's not even supposed to be checking for that in your case; that's a
>problem also in JSmolCore.js:
>
>isBinary &= Jmol._canSyncBinary();
>
>should read
>
>if (isBinary)
> isBinary = Jmol._canSyncBinary();
Hi Bob,
Downloaded 13.3.9_2013.11.02 and the compressed files
We are poor; they are rich.
It's just a dependable call that can flag whether binary file reading is
possible.
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is bet
What is the relationship between jsmol and google?
On 11/02/2013 11:58 PM, Robert Hanson wrote:
oops, my bad. You are using https, and JSmol is making a quick call to
http://google.com to test the connection.
You could try just changing that to https in JSmolCore.js and see how
that works.
O
Jmol users,
http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.02.zip
is now available. This fixes a problem with JSME getting pushed out of the
window in certain blogs, I hope.
See
http://chemapps.stolaf.edu/jmol/jsmol/jsmetest.htm
and
http://chemapps.stolaf.edu/jmol/jsmol/jsmetest2.htm
neat idea; doesn't work with AJAX in jQuery.
On Sat, Nov 2, 2013 at 1:25 PM, Angel Herráez wrote:
> > oops, my bad. You are using https, and JSmol is making a quick call
> to
> > http://google.com to test the connection.
> > You could try just changing that to https in JSmolCore.js
> oops, my bad. You are using https, and JSmol is making a quick call to
> http://google.com to test the connection.
> You could try just changing that to https in JSmolCore.js and see how
> that
> works.
I've read recently about using urls without the protocol part in order to
ps -- it's not even supposed to be checking for that in your case; that's a
problem also in JSmolCore.js:
isBinary &= Jmol._canSyncBinary();
should read
if (isBinary)
isBinary = Jmol._canSyncBinary();
On Sat, Nov 2, 2013 at 11:58 AM, Robert Hanson wrote:
> oops, my bad. Y
oops, my bad. You are using https, and JSmol is making a quick call to
http://google.com to test the connection.
You could try just changing that to https in JSmolCore.js and see how that
works.
On Fri, Nov 1, 2013 at 6:47 PM, Spinney, Richard <
rspin...@chemistry.ohio-state.edu> wrote:
> The l
The link is: https://undergrad-ed.chemistry.ohio-state.edu/VSEPR/3d-jsmol.html
--
Dr. Richard Spinney
Department of Chemistry and Biochemistry
The Ohio State University
120A Celeste Laboratory
120 West 18th Ave
Columbus, Ohio 43210
email:
rspin...@chemistry.oh
You sure your page is in that domain? Give me a url to the page itself,
please. Clicking that link suggests it is working just fine, delivering a
small .gz file encoded using base64 as requested.
On Fri, Nov 1, 2013 at 2:53 PM, Spinney, Richard <
rspin...@chemistry.ohio-state.edu> wrote:
> Hi
Hi Bob,
It is web based, I am not doing any local file access at all. jsmol.php is on
the server and the URL is set correctly, I get an error message now of " Error
connecting to server:
http://undergrad-ed.chemistry.ohio-state.edu/VSEPR/jsmol.php?call=getRawDataFromDatabase&database=_&query=ht
1) big differences if you are loading locally. Always try a test website
and see if the same problem happens there.
2) jsmol.php must be on YOUR server, not mine (domain where pages are
hosted)
3) Use Firefox for local file reading. You will have to set about:config to
allow local file access.
p
I am starting to convert my old Jmol stuff to JSmol (13.2.8) and I am getting
an error message that loading j2s/core/package.js failed. Is there a
requirement that the html pages be in the jsmol root. I have also noticed a
strange error message "Blocked loading mixed active content http://googl
Please try the files at http://sourceforge.net/projects/jsmol/files/
I just downloaded that, moved the j2s directory to ../../js, and it worked
fine.
On Thu, Oct 3, 2013 at 4:32 PM, Naomi Fox wrote:
> I just updated to the latest stable version of jsmol from the Jmol 13.2.7
> full download.
>
Me too
Quoting Naomi Fox :
> I just updated to the latest stable version of jsmol from the Jmol 13.2.7
> full download.
>
> When I loaded the jmol viewer in my web page, I got the following error:
>
>
> Jmol applet jmol_object__004228470381349__ ready
> call loadScript ..\..\js\J\viewer\Sc
I just updated to the latest stable version of jsmol from the Jmol 13.2.7
full download.
When I loaded the jmol viewer in my web page, I got the following error:
Jmol applet jmol_object__004228470381349__ ready
call loadScript ..\..\js\J\viewer\ScriptManager.js
[Java2Script] Script error: Un
On Tue, Sep 17, 2013 at 11:59 AM, Otis Rothenberger
wrote:
> Bob,
>
> I have a biochemist friend doing some testing of the local read/write. It
> works on my Mac Safari for small molecules.
>
> On the write dialog box, is there any way to trap a cancel button before
> the cancel result hits the se
Bob,
I have a biochemist friend doing some testing of the local read/write. It works
on my Mac Safari for small molecules.
On the write dialog box, is there any way to trap a cancel button before the
cancel result hits the server PHP? As it is, a cancel simply generates a PHP
error that's auto
Add php to the file location. Change the path to /jmol/jsmol/php/jsmol.php
Jaim
On Sep 17, 2013, at 1:57 PM, björn
wrote:
> Hello,
>
> i use jsmol on my website.
> Everthing works fine but i cannot download the view anymore (as png or jsmol).
>
> I changed nothing.
>
> I got the following e
Hello,
i use jsmol on my website.
Everthing works fine but i cannot download the view anymore (as png or
jsmol).
I changed nothing.
I got the following error message:
Not Found
The requested URL /jmol/jsmol/jsmol.php was not found on this server.
-
Thanks Bob!
My apologies for being so negative about IE. I have always had a terrible
time with it. But, of course, good luck to others.
Amjad
*AMJAD FAROOQ PhD DIC | Associate Professor
Dept of Biochemistry & Molecular Biology | Miller School of Medicine |
University of Miami | Miami | FL 33136
L
Great. My pleasure. (Actually not, because I really hate to dig into the
data stream code.)
Thanks for the advice. It should require MSIE 10, which is what I tested it
on. MSIE 9 doesn't have the FileLoader interface, I think. But except for
this, we support back to MSIE 9 at least.
Bob
ps - P
Bob,
Beautiful! What can I say? You are awesome, man.
So, on my side, I tested the following commands that you just enabled on
Firefox and Chrome:
"load ?.pdb"
"write FILE ?.pdb"
"write JPG ?.jpg"
"write PNG ?.png"
They all work on both browsers. I did not have much luck on IE. But, do we
care?
That's also now in place at http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm
If you have trouble, clear your cache and try again. I had to do that to
get Firefox to move to the latest upload.
Uploading of local files:
load ? # displays a dialog over the applet
x = load("?") # all
OK.
I have uploaded changes to Jmol that allow JSmol/HTML5 to read and write
files to a local drive.
Whew! That was tricky -- text, binary, zip, gzip, pngj, xml -- I checked as
many as I could find. Please test on a variety of platforms:
http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.6_2013.09.16
Hi Bob,
Thanks for the new JSmol copy. I just tested it on Firefox 23 and it seems
faster than the previous version.
Also, the following commands are working on my side too:
"load ?.pdb"
"write JPG ?.jpg "
"write PNG ?.png "
but these commands do not work yet:
"write FILE ?.pdb "
or
"write PDB ?
way ahead of you.
On Fri, Sep 13, 2013 at 3:50 PM, Amjad Farooq wrote:
>
> (1) Please also enable file save feature (in other words, allow users to
> save PDB coordinates from JSmol onto their local machine).
>
>
WRITE FILE "xxx.pdb"
But I see that's not quite working right yet.
> (2) The
Hi Bob,
This is awesome! You did it.
Yes -- your file upload feature works beautiful now. I love it. Thank you.
A few more things for you to look at:
(1) Please also enable file save feature (in other words, allow users to
save PDB coordinates from JSmol onto their local machine).
(2) The imag
See http://chemapps.stolaf.edu/jmol/jsmol/simple2.htm?USE=HTML5
Click on "Load File"
http://chemapps/stolaf.edu/jmol/zip/jmol-13.3.6_2013.09.13.zip
Has not been tested on Macs. Pretty sure it will not work in MSIE9.
Bob
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf Colleg
it's not working. I need to get it working, and I will get back to you.
--
How ServiceNow helps IT people transform IT departments:
1. Consolidate legacy IT systems to a single system of record for IT
2. Standardize and glo
Bob,
If I misunderstood you, could you please forward me a link of one your
JSmol pages, where file upload/save feature from a local machine is
working. I need to see to believe that this really works with JSmol.
Thanks!
Amjad
On Thu, Sep 12, 2013 at 6:27 PM, Robert Hanson wrote:
> hmm.
hmm. Could be something not working there. I will check.
On Thu, Sep 12, 2013 at 4:15 PM, Amjad Farooq wrote:
> Bob,
>
> Got it!
>
> But, such file upload appears to be limited to only from the server. What
> if one of your collaborators or someone else in the lab wants to upload a
> file to yo
Bob,
Got it!
But, such file upload appears to be limited to only from the server. What
if one of your collaborators or someone else in the lab wants to upload a
file to your JSmol web interface from their local machine? They would like
a regular prompt that Jmol offers. How can one make that poss
sure it does. The command is
load ?
or
load ?.pdb
e.g.
You will need jsmol.php on your server and point to it using Info.serverURL
if using HTML5. (JSmol will send the file to the server and retrieve the
"reflection" back.)
Bob
-
Why not? JSmol should do all that Jmol can do
What methos were you using in Jmol?
> I also noticed that the JSmol does not have the capability to prompt
> you for a file upload from your local drive
For example,
Jmol.script('myJmol', 'load ?');
(havent' tested that, but I think it is corr
El 11 Sep 2013 a las 11:54, Amjad Farooq escribió:
> That worked beautiful and loaded the PDB file into "jmolApplet0" from
> another frame:
Good to know :)
The relevant concept is that "Jmol" is a Javascript object with
methods. As such, it belongs to the page. So you must target the page
load
On 09/11/2013 06:52 PM, Angel Herráez wrote:
> Why not? JSmol should do all that Jmol can do
>
> What methos were you using in Jmol?
>
>> I also noticed that the JSmol does not have the capability to prompt
>> you for a file upload from your local drive
>
> For example,
> Jmol.script('myJmol',
Yep, I agree with Rolf:
It is not even possible to upload a PDB file from your local machine using
the pop-up feature of JSmol.
However, in my original query, I was referring to uploading a PDB file from
your local machine using the JmolMenu script as follows:
Jmol.jmolMenu(jmolApplet0, [
["nul
Thanks Angel!
That worked beautiful and loaded the PDB file into "jmolApplet0" from
another frame:
e.g.
function pdb() {
Jmol.script(parent.TargetFrame.jmolApplet0, "load=1SHC")
}
Load PDB
Amjad
On Wed, Sep 11, 2013 at 4:04 AM, Angel Herráez wrote:
> 1. Please, remember that JSmol is do
Angel,
I also noticed that the JSmol does not have the capability to prompt you
for a file upload from your local drive (or to save a file on a local
machine). Is this something that would become available in the near future?
This would be a very useful feature to add to bring JSmol virtually on p
1. Please, remember that JSmol is documented (if not extensively at
least the basics) in the Jmol Wiki.
2. I haven't been able to make JSmol works across frames. I did not
try further, maybe it's possible. I'd say you need to address the
Jmol object in the target frame and not the one in the cu
Thanks Paul!
Thanks Bob!
You guys are awesome.
The Jmol.script() worked right away when invoked from inside the same page
as the one that has jmolApplet0 specified. But, I still have one silly
problem. I would like to call this script from another frame. In other
words, my jmolApplet0 is loaded i
Bob,
I checked out your new JSmol page with the protein loaded in at:
http://chemapps.stolaf.edu/jmol/jsmol/simple.htm
The response time for this JSmol page is very fast and on par with Jmol. I
see no differences between the two with this new JSmol javascript that you
are using. So, kudos to you!
worked but took a long time to load with all the other stuff going on on
that page as well.
On Tue, Sep 10, 2013 at 4:29 PM, pino.stricc...@libero.it <
pino.stricc...@libero.it> wrote:
> Dear friends, finally i succeded to put JSmol inside Wordpress. It works.
>
> What happened before, i dont kn
Pino,
It works fine for me.
Mac OS X 10.6.8
Chrome latest (29.0.1547.65) - smooth motion
Firefox 23.0.1 - smooth
Safari 5.1.9 - slightly jerky, still making maybe 12 - 15Hz
Opera 12.16 - slightly jerky
Can you display render time / frame rate from the JSmol popup ?
Cheers,
Greg E
On 11 Septe
The distribution includes a file
jmol2.js
which allows the older jsmol.js syntax such as
jmolButton()
jmolScript()
etc.
to be used without change. I think they are all implemented.
But the new way is recommended:
Jmol.jmolButton(appletID, "script", "label")
see
http://wiki.jmol.org/index
Try:
Jmol.script(jmolAppletObjectNameComesHere,"load =PDBID")
where jmolAppletObjectNameComesHere is the name you gave to your jmol object
instance at creation
Paul
Le 10 sept. 2013 à 18:01, Amjad Farooq a écrit :
> Bob,
>
> I checked out your new JSmol page with the protein loaded in at:
>
muchisimas gracias angel!
plz when u guys have time, add the JmolScript and JmolMenu features to
JSmol. Those are my favorite features in Jmol and it would be great to have
them in JSmol too. Otherwise, I think JSmol rocks. Being able to do Jmol
without the nasty Java is awesome.
amjad
On T
Haven't got time now, sorry.
I'll add to my to-do list
> Angel, I'd appreciate your assessment of
> set platformSpeed
--
How ServiceNow helps IT people transform IT departments:
1. Consolidate legacy IT systems to a si
Dear friends, finally i succeded to put JSmol inside Wordpress. It works. What
happened before, i dont know. It remain to be seen until what grade it
works.The url is this http://pinostriccoli.altervista.org/?p=6434
If you can check the page it would be nice ...Pino
-
Angel, I'd appreciate your assessment of
set platformSpeed
Are there settings that you prefer for specific types of compounds? What
would you recommend for proteins in general?
Bob
On Mon, Sep 9, 2013 at 12:51 PM, Angel Herráez wrote:
> > Something odd there. That's not been our experience.
> Something odd there. That's not been our experience.
Well, my experience is that Java Jmol is faster than JSmol. Of course
this has improved a lot in the las few months and now it's rather
tolerable, and all depends on the size of the molecule loaded and
even personal perception, but for me y
Note that
Info.use="JAVA HTML5"
(the auto-switching idea) no longer works. Pages have no way to know if
Java access is blocked anymore.
On Mon, Sep 9, 2013 at 10:08 AM, Maciek Wójcikowski
wrote:
> That's right. What's more, if you prefer one version (Java/JavaScript)
> over another you can s
That's right. What's more, if you prefer one version (Java/JavaScript) over
another you can switch between them seamlessly. Provided you've configured
everything properly. You can see that here -
http://chemapps.stolaf.edu/jmol/jsmol/test2.htm
JSmol is still lagy compared to Jmol, but it's far bet
I think you have the syntax right. Looks right to me, anyway. I don't know
that you need Jmol.loadFile(). Just create the script:
Jmol.script(jmolApplet0,'load =1blu;display not water;select protein or
nucleic;cartoons only;color structure;select *')
On Sun, Sep 8, 2013 at 8:44 PM, Amjad Faro
On Sun, Sep 8, 2013 at 5:36 PM, Amjad Farooq wrote:
> What is the long-term goal? Is JSmol eventually going to replace Jmol? Is
> the future about having an app that does not rely on an external Java
> plugin?
>
Exactly. The future is now. The Java plugin is no longer usable on general
public p
Something odd there. That's not been our experience.
This is at what page? What structures? What platform? (Is this an older
iPad, for instance?) Trying to read PyMOL files that have one or more
molecular surfaces?
Define "much much slower".
First try pages such as
http://chemapps.stolaf.edu/jm
Hi Bob,
What is the syntax for placing JSmol commands such as:
Jmol.script(jmolApplet0,'select *;cartoons off;wireframe -0.1')
and
Jmol.loadFile(jmolApplet0,'=1blu',';display not water;select protein or
nucleic;cartoons only;color structure;select *')">
inside a regular javascript. For example:
Bob,
As you advised, I added the "set the platformSpeed 1" line to the applet
when loading PDB file. It improved the speed considerably to a level that I
am very happy with. But, I still believe, JSmol somewhat suffers from the
speed issue and Jmol is noticeably much more smoother when moving
stru
Bob,
I tried JSmol on both firefox 23 and chrome under both Fedora 15 and
Windows 7. In all cases, JSmol appeared to be much much slower than Jmol.
How and where do I set the platform speed? Please advise accordingly.
Thank you,
Amjad
On Sun, Sep 8, 2013 at 4:02 PM, Robert Hanson wrote:
This is on what platform?
Did you use
set platformSpeed 1?
Bob
On Sun, Sep 8, 2013 at 1:51 PM, Amjad Farooq wrote:
> Hi Bob,
>
> Just to let you know that I tried the new version of JSmol.
>
> JSmol runs very slow when viewing proteins compared to Jmol. So, in short,
> JSmol is cool if one
Geoffrey, maybe a cached/noncached difference in those files that work or
not?
--
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Hi Bob,
Just to let you know that I tried the new version of JSmol.
JSmol runs very slow when viewing proteins compared to Jmol. So, in short,
JSmol is cool if one can do all this without the need for an external Java
but the slow speed of JSmol is a big deterrent to using it in everyday work
and
Not exactly the subject, but when downloading a pdb file from RCSB website, the
server checks if the browser accepts compressions and compress the pdb file on
the file. You don't have to explicitly request a pdb.gz file to get the
benefits from data compression.
Paul
Le 8 sept. 2013 à 08:25, Ge
I *think* I understand what is going on here.
The problem appears due to inconsistencies in the way the pdb files are
gzipped up
In my jsmol /data folder:
1crn.pdb.gz is not actually gzipped at all, just a plain text file
identical to 1crn.pdb. However, if 1crn.pdb is gzipped to make a bona fide
Err... Actually though .pse files now work with Chrome, I am still seeing
an issue with some .pdb.gz files (e.g. data/1m19.pdb.gz, data/3hz7.pdb.gz)
though data/1crn.pdb.gz still works!
Forgot the RCSB links were now using .pdb rather than .pdb.gz and can't
easily check against the Stolaf server
ok -- crossed in the night there. So tell us what the story is with
Chrome...
On Sun, Sep 8, 2013 at 7:01 AM, Robert Hanson wrote:
> If you mean running a local page via Chrome, I'm pretty sure that's
> impossible. Just use Firefox for local file access.
>
>
> On Sun, Sep 8, 2013 at 4:51 AM, Ge
If you mean running a local page via Chrome, I'm pretty sure that's
impossible. Just use Firefox for local file access.
On Sun, Sep 8, 2013 at 4:51 AM, Geoffrey Rowland wrote:
>
> ...though still have problems with Chrome and binary files the with a
> download and local webserver installation of
Please ignore my last post. Forgot to set things up to point at my local
jsmol.php!
Can now display .pdb.gz and .pse binary files.
Cheers
>On 8 September 2013 09:51, Geoffrey Rowland wrote:
>
> ...though still have problems with Chrome and binary files the with a
> download and local webserver
...though still have problems with Chrome and binary files the with a
download and local webserver installation of the latest (07-Sep-2013)
Jmol.zip bundle from http://chemapps.stolaf.edu/jmol/zip/.
About... reports the JSmol version as slightly older (13.2.5 2013-09-06
12:26:07) than the version
All now seems to be working (Firefox, Chrome, Chromium, Opera on Fedora 19;
Firefox, Chrome, Opera, IE 10 on Windows 7) for
http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm
Seeing Jmol/JSmol version 13.2.5 2013-09-06 12:28:49
Thanks
oh, joy. I'm SLOWLY uploading
http://chemapps.stolaf.edu/jmol/zip/Jmol.zip
now. (From the ACS meeting in Indianapolis)
On Sat, Sep 7, 2013 at 6:34 PM, Bays Philip wrote:
> Bob: Everything now works on the Mac in Safari, Chrome, and Firefox:-)
>
>
> On Sep 7, 2013, at 6:13 PM, Robert Hans
Bob: Everything now works on the Mac in Safari, Chrome, and Firefox:-)
On Sep 7, 2013, at 6:13 PM, Robert Hanson wrote:
> http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm
J. Philip Bays
Emeritus Professor of Chemistry
Department of Chemistry and Physics
Saint Mary's College
Notre Dame, IN 465
I have to upload new files to SourceForge and chemapps. Should be complete
in 30 minutes or so.
On Sat, Sep 7, 2013 at 11:46 AM, Geoffrey Rowland
wrote:
>
> In case it helps...
>
> http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm (Jmol 13.5.5 2013-09-06)
> is fully working for Firefox and Opera,
Just fixed that. Please try again.
On Sat, Sep 7, 2013 at 11:46 AM, Geoffrey Rowland
wrote:
>
> In case it helps...
>
> http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm (Jmol 13.5.5 2013-09-06)
> is fully working for Firefox and Opera, including binary files. :-)
>
> The new RCSB links (using .pd
In case it helps...
http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm (Jmol 13.5.5 2013-09-06) is
fully working for Firefox and Opera, including binary files. :-)
The new RCSB links (using .pdb rather than .pdb.gz) are working for Chrome.
;-)
However, binary files (e.g. .pse or .gz) are now not wo
Yes.
J. Philip Bays
Emeritus Professor of Chemistry
Saint Mary's College
Notre Dame, IN 46556
Sent from my iPhone
On Sep 7, 2013, at 7:49 AM, Robert Hanson wrote:
oh, that's sad to hear. Phil, will you be around in the next hour or so to
help me test? I can work on it for just a short while.
It works now!
On Sep 7, 2013, at 8:08 AM, Robert Hanson wrote:
> OK, that was just my site not having been updated, I think. Please try that
> again.
>
>
> On Sat, Sep 7, 2013 at 6:48 AM, Robert Hanson wrote:
> oh, that's sad to hear. Phil, will you be around in the next hour or so to
> hel
OK, that was just my site not having been updated, I think. Please try that
again.
On Sat, Sep 7, 2013 at 6:48 AM, Robert Hanson wrote:
> oh, that's sad to hear. Phil, will you be around in the next hour or so to
> help me test? I can work on it for just a short while. What have I done
>
>
oh, that's sad to hear. Phil, will you be around in the next hour or so to
help me test? I can work on it for just a short while. What have I done
Bob
On Sat, Sep 7, 2013 at 6:44 AM, Bays Philip wrote:
> No. Now we are back to the straight line issue.
>
>
> On Sep 7, 2013, at 7:40 AM, Ro
No. Now we are back to the straight line issue.
On Sep 7, 2013, at 7:40 AM, Robert Hanson wrote:
> Nonetheless, if someone with a Mac could check the right-most column links of
> http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm today, I would appreciate
> it. I changed the PDB links so tha
Nonetheless, if someone with a Mac could check the right-most column links
of http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm today, I would
appreciate it. I changed the PDB links so that if the case one does not
have binary transfer capability (Safari and Chrome), then the ".gz" will
be removed
OK, this is an internal IT problem at St. Olaf. I will get onto it.
Probably will not be fixed until Monday.
On Sat, Sep 7, 2013 at 4:34 AM, Robert Hanson wrote:
> I wasn't able to update that site because of VPN problems I had in Europe.
> But I'm back in the US. Thanks for the reminder. Updat
I wasn't able to update that site because of VPN problems I had in Europe.
But I'm back in the US. Thanks for the reminder. Updating now
On Fri, Sep 6, 2013 at 8:20 PM, Philip Bays wrote:
> I have been out of the loop for week or so. I still find that if I go to
> the following link, none
I have been out of the loop for week or so. I still find that if I go to the
following link, none of the RCSB links work in Mac Chrome or Safari. Was the
issue solved? I have cleared the cache and the java cache to no avail.
http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm
Philip Bays
Emeri
OK, so right now I've released these:
jsmol-13.3.4.zip
Jmol-13.3.4
Jmol-13.2.4
and I've got it working to also release
jsmol-13.2.4.zip
Thanks for the comments.
Bob
On Thu, Aug 22, 2013 at 11:18 AM, Rolf Huehne wrote:
> On 08/22/2013 05:56 PM, Angel Herráez wrote:
> >> How important is it
On 08/22/2013 05:56 PM, Angel Herráez wrote:
>> How important is it that we have a "stable" version of the applet that is
>> different from the
>> "development" version?
>
> Yes, see above.
> What do others think?
>
I think it is very important. If you want to use it in a production
environment s
Sorry, working too fast.
On Thu, Aug 22, 2013 at 10:56 AM, Angel Herráez wrote:
> > Well, actually, "_dev" means we haven't released that version yet. So
> the next will be without _dev
> > -- 13.3.4 and 13.4.4. I made the mistake last release to increase the
> number as well, so that's
> > prob
> Well, actually, "_dev" means we haven't released that version yet. So the
> next will be without _dev
> -- 13.3.4 and 13.4.4. I made the mistake last release to increase the number
> as well, so that's
> probably what is throwing you off.
OK
> 13.3 is the "stable" version.
> 13.4 is the "de
Well, actually, "_dev" means we haven't released that version yet. So the
next will be without _dev -- 13.3.4 and 13.4.4. I made the mistake last
release to increase the number as well, so that's probably what is throwing
you off.
13.3 is the "stable" version.
13.4 is the "development version.
Wi
> 13.3.4, I think. But what I'm not distinguishing between 13.3 and 13.4 for
> JSmol/HTML5, only the
> Java versions.
Well, if this is introduced in some 13.3.4_dev, I think the description to be
safe should say the next subversion.Otherwise, somone with an older 13.3.4
may xpect it to work. T
13.3.4, I think. But what I'm not distinguishing between 13.3 and 13.4 for
JSmol/HTML5, only the Java versions.
It's important to note that one needs to use
jsmol.min.nojq.js
if one wants to use one's own version of jQuery.
On Wed, Aug 21, 2013 at 5:20 AM, Angel Herráez wrote:
> Hi Bob :)
>
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