Re: [Histonet] Active Caspase-3 IHC-P staining

2022-06-24 Thread Hobbs, Carl via Histonet




Have a look at results in Histonet images?

Good luck

Carl
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[Histonet] Zen light

2022-06-18 Thread Hobbs, Carl via Histonet
Hi Histonet
Maybe about to migrate from Axiovision to Zenlight and Zen Pro
Would be grateful for any comments
Thanks

Best wishes

Carl

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Re: [Histonet] Stability Guarantee vs Expiration date

2022-03-18 Thread Hobbs, Carl via Histonet
Good info
I have always made 1/10 stocks of my abs ( in TBS/BSA/azide) and frozen 
aliquoted neat stocks.
For eg: I still use a 10 yr old "Dako" anti GFAP at 1/5000 ( stock 4C 1/10)
Sure, I am in research
Sure, I always add a positive control
Today I used a 5 yr old 1/10 4C of anti PCNA ( Abcam ab29)...worked as well as 
when I 1st made the 1/10 stock 
Sureone has to keep checking by adding controls (  a known positive  like 
gut so that if crypt nuclei are exclusively +ve...OK)
Mind you.PCNA is NOT a great prolif marker : far better to use anti Ki67
( half-life difference)
However, I wanted to see if Ki67/PCNA was good for worm Pwax sections ( former 
-ve, latter TOO positive)
Caveat: stored positive control sections can "go off"
Some call it "oxidation" of epitopes
It happens to some epitopes/ags
Best wishes, Histonet


Carl





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Re: [Histonet] IHC staining of cartilage

2022-03-01 Thread Hobbs, Carl via Histonet
Yes...a big problem for me, tooif you are using HIER??
Cartilage and bone are major tissue retention problems 
I cut Pwax sections of mouse long bones/knee joints for anti GFP IHC
I still get a % fall off but,  using manual HIER at 90C I manage to get enough 
sections to get good results
However, I imagine that your autoIHC stainer prob uses 90C HIER?
I find Trajan 3 series slides more reliable than Superfrost Plus slides.
Sure, I need to dry my slides for 24 hrs in an operating fume hood ( we can't 
turn ours off/down)
Then I place slides in a 60C oven for 2hrs.
Then dewax etc

Be interesting to read of other suggestions

Best wishes

Carl

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Re: [Histonet] Tiny folds in colon bx

2022-02-11 Thread Hobbs, Carl via Histonet
Imhoyour waterbath is not hot enough
The sections are not expanding
Sure, if you are floating sections directly onto water bathbaaad
Place your ribbon on a slide that has 20% alcohol on it
Float that onto your waterbath
The alcohol teases the sections nicely sono creases.
NB: Leave in the waterbath until you see no creases
Works for me every time
NB: I do many species of gut and have no problems if.I do the above

Good luck

Carl

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Re: [Histonet] Detection Systems (Mac Donald, Jennifer)

2022-02-06 Thread Hobbs, Carl via Histonet
As I stated:
Polymer systems only work GREAT when you also use the DAB in the kit
You pay dearly for it
Check out my comparison in Histonet Images
Carl
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Re: [Histonet] Detection Systems

2022-02-02 Thread Hobbs, Carl via Histonet
Hi
I'm a loner Biomed Scientist ( Histology specialist) in Research
I use stABCpx-DAB regularly
Yes, polymer kits are quicker and very sensitive.
However, I have tested 3 popular such kits and they ONLY work well( in my 
hands) if you also use their DAB: I tested this by substituting my DAB for 
theirs ( and vice versa)  and got the same signal strength as my  "LSAB" std 
method
I also used my LSAB/their DAB and got greater sensitivity
So, imhoit's the DAB that gives greater sensitivity thus more dilute most 
expensive primary abs.
Sure, if time/simplicity is of the essence...Polymer kits are the current "best"
Howeverfor an extra max 60 mins...I just add Imidazole to my DAB 
visualisation solution after stABCpx detection
That gives me identical sensitivity to polmer kits at much less cost.
Sure, I can "play"...if you are in Diagnostic Histopath..you can't.

Best wishes

Carl

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Re: [Histonet] Paraffin embedding following storage in 70% alcohol

2021-11-13 Thread Hobbs, Carl via Histonet
The Most venerable Histologist ( JK) is correct...as always!
No way to go from 70% alcohol directly into Pwax
Have to remove ALL water before infiltrating with Pwax
Yesalso need to replace alcohol with Xylene/Histoclear before infil. with 
Pwax.
Sure, you can use Isopropyl alc to obviate xylene /Histoclear/equiv. 
but..Jury's out on that
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Re: [Histonet] Retirement in sight!

2021-09-09 Thread Hobbs, Carl via Histonet
Well, Dr Morken
I do not know you but..I have read/absorbed/acted upon occasionally... 
your most informative Posts, over the years
Your Professional History reads such a wide spectrum of 
interests/skills/locations!
I assume that you will still be contributing to Histonet so that your valuable 
insights/experiences may still be available to us that have not yet retired.

I trust that your Family equally enjoyed your trajectories across the World!
I wish you the very best in your new "Post"
Sincerely

Carl
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Re: [Histonet] Protocol for DAPI staining on paraffin sections

2021-06-09 Thread Hobbs, Carl via Histonet
Dear Alida
my emails to your msu.montan.edu get returned to me as undeliverable
I have incubated 2 dewaxed sections ( different slides) in HOECHST +/- HIER.
Both stain nuclei very well.
The HIER-treated section gave a brighter nuclear positivity ( so needed to 
lower exposure time on taking images)
NSD though
I can post on Histonet images, if you wish

carl



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Re: [Histonet] Re Protocol for DAPI staining on paraffin sections

2021-06-04 Thread Hobbs, Carl via Histonet
Dear Alida,
That is a good point.
I probably have only done HOECHST on Pwax sections after they have been 
heat-Antigen retrieved ( HIER)
However, H ( or DAPI) works on fixed cell monolayers: they don't get HIER 
treatment)
Nor do frozen sections ( well, some do) and the HOECHST/DAPI works fine on both
However, perhaps you can just take a Pwax section to water and apply HOECHST 
for 10 mins, wash off, mount in anti fade aq. mountant and have a look down a 
Fluorescence scope?
If you can wait, I will check this next Monday ( put H on a non HIER'd Pwax 
section  and get back to you by Monday later)

Unless, whoever that is doing the fluorescence DAPI/HOECHST nuclear staining is 
actually doing it on Pwax sections that have been HIER-ed?

Best wishes

Carl



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[Histonet] Re Protocol for DAPI staining on paraffin sections

2021-06-03 Thread Hobbs, Carl via Histonet
Use DAPI/HOECHST at the same concentration you use for cells/FS
I use Hoechst H33258 Sigma 10mg/ml soln
I dilute by adding 0.5 microL to 100 microL buffer then add 1/100 to Alexa 
secondaries ( final 1/20K diln factor)
Some incubate in HOECHST or DAPI after secondary ab incubation, for IF
Sure, if only "staining" nuclei, incubate in 1/20K Hoechst in same buffer
This will vary for each lab
Or, buy mounting medium that contains DAPI

Good luck
Carl

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Re: [Histonet] Pre-made chrome alum slides source?

2021-01-09 Thread Hobbs, Carl via Histonet


Hi
I know that you are well aware that you can make your own, easily.
(I agree re the hydrophobicity induced)
I am interested to know why you do not wish to, Tim
I have to admit I don't make silanised slides anymore...I buy Superfrost Plus, 
for example.
Shame on me home-silanised are equally good, imho.
Interested in differing opinions
Best wishes

Carl

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[Histonet] Evaporation in frozen aliquots

2020-10-16 Thread Hobbs, Carl via Histonet


Hi Kelly
If the tubes that hold your frozen ab aliquots do not have a complete 
sealthe water in them will lyophilise, over time.

I have your problem occasionally, for that reason ( I have a couple of thousand 
frozen primary abs)
Use snap-lid tubes ( I use 200microL PCR tubes)

Hope that explains.

Carl



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Re: [Histonet] question on processing worms (1...@comcast.net)

2020-09-27 Thread Hobbs, Carl via Histonet
Hi
I have done several yrs of work on Eisenia fetida worms with a PhD student.
I decided to do a std Pwax processing schedule.
The student dissected the appropriate area then placed in 10% Formalin in PBS 
pH7.4 for 24hrs on a rocker ( gentle agitation)
I then processed to Pwax using a std IMS/Xylene/wax on a Leica carousel ( 1hr 
in each station)
Worked fine.
Could do tinctorial and IHC no problem.
Sure, many primary Abs didn't work...
We also did TUNEL on them Pwax sectionsworked a treat.
I may have TUNEL images in the Histonet Image archive.

Good luck!
NB: Sure, maybe freezing is a better way forwards. Depends. 
All I know is that the PhD student passed with no problems and went on to a so 
far succesful career in Science Industry

Best wishes

Carl

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Re: [Histonet] Delays in tissue embedding after mouse tissue

2020-09-05 Thread Hobbs, Carl via Histonet
Hi Jamie
I do this often, for he same reason
Ms and rat soft organs ( hollow and solid) leg bones, whole ankles, ears, cube 
of tissue containing cochlea, chick ribs.
Once  the delay was 6 months. I allowed the cassettes with tissue in to 
solidify ( as do you) and then leave them in a labelled box to await embedding.
Sometimes the researcher cannot embed at scheduled time and I would rather fix 
then process than have fixed tissues sitting in 70% alcohol until they can be 
processed and embedded on schedule ( sure, it doesn't adversely affect, in my 
xp, to leave in 70% alc at 4C provided the tissues have been optimally fixed ( 
meaning in 10% Formalin)

Obviously I strongly discourage any delay, telling them that it is deleterious
Gotta keep them Researchers in order
;-)
Best wishes
Carl



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Re: [Histonet] human shoulder joint fixation

2020-08-22 Thread Hobbs, Carl via Histonet
Jeeza human shoulder joint?
Be grateful for background.
Many years ago I had to fix/process to Polyester resin many monkey condylar 
joints ( jaw)
As iterated  here, I stripped all superfluous tissue off and processed the 
joints to resin.
( as I do now when doing Histology on ms knee joints as model for 
arthritisbut, using Pwax after decal)
 Monkey mandibles:  fix in Formalin...on a rocker for 2 wks ( 20:1 Formalin:PBS)
Changed twice
I then took them specimens to a dedicated lab who sectioned this resin using a 
diamond circular saw.
I was too young to follow the process further...also, in them days , 
Technicians did what they were told and were never appreciated.
Maybe a different fix fluid will give a better morphologyJK will advise, 
surely!
However, the project I was involved with won a prize...somewhere ( too young to 
be bothered)

C







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Re: [Histonet] Apple Green Birefringence in Amyliod slides

2020-07-31 Thread Hobbs, Carl via Histonet
I have images on Histonet image archive 
Congo red brightfield and also fluorescence using the TRITC channel.
No green birefringence images tho

I find fluorescence more sensitive for Congo red
However, my std is to use an anti Amyloid beta antibody.
If anyone cares to look and comment.I'm always listening/reading to 
improve my practise/practice ( which is the korrekt word?chuckle)



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Re: [Histonet] Warm formalin

2020-07-22 Thread Hobbs, Carl via Histonet
You a re right, Lynette
De rigueur for Diagnostic labs!
My apologies for forgetting that ( I am now in research labs where...it is less 
restricted, unfortunately).
Essential to be well-documented/adherent to SOPs.
Respectful-illy

Carl


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From: Lynette Pavelich 
Sent: 22 July 2020 19:19
To: Hobbs, Carl 
Cc: histonet@lists.utsouthwestern.edu 
Subject: Re: [Histonet] Warm formalin 
 
I would suggest to always refer to your reagent’s IFU insert. This will advise 
at what temperature you should use/store. All inspectors (CAP, JC, CLIA, etc.) 
will make you adhere to these specifications. 
Unless you do a well documented validation study that goes outside of these 
restrictions from the IFU that proves no patient harm, you honestly must go by 
the IFU recommendations. This would apply to all of our 
stains/reagents/solutions/antibodies.
Our world is becoming more restrictive……

hope this helps,
Lynette Pavelich, HT(ASCP), QIHC


> On Jul 22, 2020, at 1:55 PM, Hobbs, Carl via Histonet 
>  wrote:
> 
> Depends on what you are doing with the sections.
> IHC or just dye -staining?
> Sure...too hot ( cooking) is not recommended, as stated
> Also stated is that high -temp fixation may also be used with no deleterious 
> effects as long as the fixation time is not extended.
> However, RT -ish even for a week won't be a problem...imho
> Needs must?
> 
> 
> 
> Carl Hobbs FIBMS
> Histology and Imaging Manager
> Wolfson CARD
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> Kings College London
> London
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> 
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Re: [Histonet] Warm formalin

2020-07-22 Thread Hobbs, Carl via Histonet
Depends on what you are doing with the sections.
IHC or just dye -staining?
Sure...too hot ( cooking) is not recommended, as stated
Also stated is that high -temp fixation may also be used with no deleterious 
effects as long as the fixation time is not extended.
However, RT -ish even for a week won't be a problem...imho
Needs must?



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Re: [Histonet] An occasional blog post

2020-07-14 Thread Hobbs, Carl via Histonet
Strange/coincidence that your link has my name in it, chuckle
I can't access the Chicago Tribune link
Or, is it a scam??

Curious-illy

Carl

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[Histonet] Not forgetting...

2020-07-10 Thread Hobbs, Carl via Histonet
...Ham's Histology!
Forerunner and...still inciteful!
Set the std for rigorous Histology books.
What a wonderful read, still.
He talks to me
Sure, Junquiera too!
A moreinstant need ?
Also the graphic Freeman and Bracegirdle...my students still want to take 
images of their images...simple( Black N white)  yet...perfect!
Of course they cannot.
I love the simplicity of it..
Also...I cannot remember the author ...but..an orange-coloured 1st edition of 
Basics of chemical fixation ( not that title..I can't remember..grrr )
I love reading it tho...I don't understand most of it, chuckle ( I have it, 
Dear Readers...it is at work but, ...I am furloughed)
Who was it written by??
Frustrated-illy

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[Histonet] Histology text book "bibles"

2020-07-09 Thread Hobbs, Carl via Histonet
Good to read of others' xp
I remember the Armed Forces book...good in parts, unlike the Curate's egg!
Disbrey and Rack...wonderfully refreshing.
Exceedingly well-informed person was Brenda!
I reckon she swung the panel in my favour for a Histology Manager job.YEARS 
ago!
 Imho the forerunner of the best: Kiernan 
Sure, neck and neck with Bancroft and Stevensboth game-changers
Pearce...wonderfully instructive yetdense?
What about the 70's "bible"...I forget the English author..dash it!
His surname begins with a C?
Carleton!
The book was THE text at that time ( in UK)...however, I found it rather 
didacticno depth
I could be wrong, of course!
I did learn a lot from it...then found it lacing in depth...thirst for Histo 
teck knowledge, chuckle
It gave me a seminal Taster for more, however.
Met him at many London Histology discussion meetings...at one of which he 
dismisssed me for using DPX mountant
( cheaper for my lab/quickersetting...close RI , I recall?)
Harrumph, he saiduse natural resin: Canada balsam!
Much closer RIhmm
What does Prof. Kiernan think re DPX v Canada balsam??
Luverly smell..tho (  C.balsam)
Does anyone use CBalsam still?
Also
sure, Harry Cook has a special place in my Histology career...such a humble 
yet...knowledgeable person.
He opened up my mind to things Histological...his depth and breadth of things 
Histological was...humbling and mesmeric.
His Carbohydrate booklet was so good for me, when I needed it!
Curious-illy
Always

Carl

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Re: [Histonet] Fixed frozen non-paraffin mouse brain

2020-07-07 Thread Hobbs, Carl via Histonet
Chuckle
Thank you, John Kiernan
Yes...I appreciate your filling in them gaps.
I do understand/know themhaving read, over the years many of the Giants of 
Histology who gave me such inciteful/usable  knowledge, including yourself.
I just didn't want to bloat my "pennyworth" otherwise it would become several 
Poundsworth , chuckle.
I am not worthy
I recall having pp in unbuffered Formalin...we chucked it
Well, in those days one emptied it down the sink!
Sure, re Formic acid
However, imho...that is a more theoretical problem, as Formalin was used up 
within a couple of weeks...in any of my Labs
I used to check the pH once a week.
In practice, there is much leeway in the use of Formalinprovided one is 
knowlegable regarding all the parameters?
Sure, it is not the "best" fixing fluid butit all depends, as you 
intimated, on one's needs ( eg: Ultrastructural integrity v immunoreactivity)

Thank you very much for your elucidations
I always learn moream happy to
I have the ORANGE book ( at work..I am on furlough) ...grrr...I fail to recall 
the most excellent author...on fixation. 1st edition
I thoroughly enjoy/ed reading it
It is another of my "Bibles"it expands my mind just like any Bible 
should...imho.
A bible is like a learning curve: one must go back to it when in doubt 
but.go forward when in no doubt but, supported/stayed  by that original 
knowledge
Hence, I can see further by standing on the shoulders of the giants that came 
before me?
Paraphrasingly...surely.
Your opinion re the Orange-covered book ?
Sure, there are many resources/publications regarding fixation...most are 
idiosyncraticimho. 

Respectfully

Carl




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Re: [Histonet] Fixed frozen non-paraffin mouse brain

2020-07-05 Thread Hobbs, Carl via Histonet
Prof. Kiernan, as usual, provides us all with such a depth/breadth of 
particular information/advice.
His Histological and Histochemical methods BIBLE is still my favourite read.

Respect 
Most researchers fix in depolymerised Paraformaldehyde because someone must've 
originally thought:
" Hang on, if we fix in commercially bought 40% Formalin, it's got 10% methanol 
added ( to slow rate of formaldehyde repolymerisation) ...that will compete 
with Formaldehyde fixation.
So, we get coagulative and additive fixation. That is not good, folkslet's 
get pure and use depolymerised Paraformaldehyde: pure methylene glycol polymer"
I am sure Professor Kiernan can correct my inaccuracies!
Anyway..I've never noticed any difference: I've worked in diagnostic labs ( 
unfixed frozen muscle/renal/rectal bx) and also research labs ( unfixed/ fixed 
frozen tissues) using both fixing solutions
I have not noticed any IHC/IF difference in reactivity.
Many primary abs do NOT work even with fixed/unfixed  frozensome of them 
WILL need HIER ( at 90C rather than M/W or pressure cooker AR but, only fixed 
frozen of course), imho.
Part of the problem is whether  the antigen is linear or 3D...sorry for 
simplicity.
I can successfully snap-freeze fixed/unfixed rat/ms brain hemispheres without 
using sucrose ( success measured by lack of holes at the LM level). 
This is because I was trained in a diagnostic lab to freeze fast but, 
effectively.
It is a technique that requires experience for consistency of 
successsometimes I fail!

The reason most use 20/30% sucrose is to give poor a snap-freezing technique a 
chance to avoid ice-crystal artefact, as stated by Kiernan).
Sucrose is no panacea.technique is everything.
My pennyworth-illy
Carl



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Re: [Histonet] Anyone having difficulty with tissue adhesion?

2020-06-17 Thread Hobbs, Carl via Histonet
I am very interested.
I do IHC on Pwax sections of mouse bone, human keloid tissue ( got a project 
aching to start which hopefully will result in a publication) and mouse/rat 
contused spinal cord.
All are quite difficult to keep on the slides as I have to, mostly, use HIER to 
get the best IHC- positive result.
The best slides I have used to date are Trajan's Series 3.
( superior to commercial Superfrost Plus, homemade Silanated or double-subbed 
slides)
However, they do not retain bone/cartilage...sure, keloid collagen is much 
better retained but there is still some loss
Sure, I get researchers to buy only them for the tissues stated above.
I will not be returning to work until 3rd Augustmaybe later.
It depends...….

Carl Hobbs FIBMS
Histology and Imaging Manager
Wolfson CARD
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Kings College London
London
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Re: [Histonet] stored in 80% isopropanol

2020-06-04 Thread Hobbs, Carl via Histonet
If you have a processer using IMS ( or the more expensive ethanol)
take tissues from that 80% IPA ( iso Propyl alcohol) to a fresh 80% 
IMS/ethanol, whichever you use as std and continue as normal 
( you have no idea if the specimens were taken from water/PFA directly into 80% 
IPA? Thus there will be more than 20% water in there)
IMS/IPA/EtOH are all compatible for Pwax processing, where a std clearing agent 
is used ( eg: Xylene, Histoclear)
Sure, you can as suggested use increasing concs IPA and go directly into wax, 
bypassing the "clearing" stage but, imho longer Pwax times are needed as IPA is 
not miscible in Pwax unless at the high temp used.no big deal.
I have used this method in the past, with success
Tho I have to admit that I still for my sins, find that IMS then Xylene gives 
the best final Pwax block!
If others disagree, I'd be grateful to know what their safer equally as good 
clearing agent alternatives are and the cost/block compared with using xylene.
Cost/benefit?

Best wishes


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Re: [Histonet] Recommended thickness of Amyloid sections

2020-04-17 Thread Hobbs, Carl via Histonet
Depends on what you want to do: positivity or maximise signal?
I have FS and Pwax images up in Histonet image archive if you care to have a 
look
Best wishes to all


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Re: [Histonet] too much formalin time (Curt Tague)

2020-04-05 Thread Hobbs, Carl via Histonet
Hi Curt
I trust you and yours are well...
Imho.it will still be an excellent control, provided that you are 
processing  it to Paraffin wax and use  HIER ( antigen retrieval) before IHC/IF.
Sure, as long as it has been optimally fixed ( immersion fixation with no 
agitation -BAD- leads to zonal variations of positivity)
I have posted images on Histonet site of human tonsil that has remained in fix 
for a similar time before processing.
Sure, I cannot guarantee all proteins will be retrievable but, in my XP, good 
fixation is the keynot the length of fixation.

Best wishes

Carl

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Re: [Histonet] Glycogen detection

2020-03-08 Thread Hobbs, Carl via Histonet
Q has been answered: fix in "10% Formalin" made up from concentrated liquid 
which has 10% Alcohol to retard reformation of paraformaldehyde polymers.
Once the 40% liquid has been diluted to 4% the fixative effects of alcohol are 
minimised.
Alcohol does not dissolve glycogen ( otherwise the dehydration stage of Pwax 
processing would)
The Main Man JK has OK'd this.
I am glad that he still posts/passes on his extensive knowledge!
I can see further by having his shoulders to stand on
Glycogen is still demonstrable ( with PAS) but, as JK pointed out, the Formalin 
will "push" the glycogen up to the plasma membrane as it fixes the proteins, 
giving what I learnt to call "streaming" artefact
 In 2014, I posted an image  in Histonet Images of glycogen streaming in a 
FFPWS skin section stained with PAS.
Have a look?



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Re: [Histonet] Animal and Human Tissues

2020-02-14 Thread Hobbs, Carl via Histonet
If you are referring to Pwax processing.no difference imho.
I process/have processed tissues from  human, axolotl, alligator, mouse, rat, 
marmoset, quail, chicken, pig, octopus
using same schedule.
Also fly larvae and earthworm
You can see IHC images in the Histonet image archive
Best wishes

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Re: [Histonet] How to Reduce Tissue Autofluorescence

2020-02-08 Thread Hobbs, Carl via Histonet
Hi
Do you refer to FIF?
Or...autofluorescence?
Different...as you prob know so, apologies in advance.
The Wright Cell imaging Facility ( Toronto western research Inst) pdf: very 
informative
FIF: I have tried Glycine, Ammonium chloride and Na-borohyd.
I got best results with Glycine
Howevernone are great.
Multi spectral imaging is the best way forwards butexpensive.
Sure, in Lambda mode using Zeiss Zen on a confocal gives good results ( tho I 
have forgotten how to do it, sigh)
After setting up you hit the fluorescence you don't want...hit the one you 
wantif the wavelengths are different, what you don't want you eliminate, 
electronically.
Vectorlabs sell an excellent kit for FIF elimination...sure over-expensive, 
given the ingredients.
We found that dilution of their working reagent by x2- x4 gave best results
As good as multispectral imaging, imho.
Autofl of lipofuscin is supressed using Sudan BlackB.

Good luck




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Re: [Histonet] X-gal staining

2020-01-11 Thread Hobbs, Carl via Histonet
Hi
No replies so far so.my pennyworth.
Imho ...no
beta Gal enzyme is inactivated by std Pwax processing.
So, when you apply the X-gal substrate and chromogen solution to Pwax sections, 
 it will not give you a positive blue final reaction product
If you want to detect beta Gal in FFPWS and visualise with DAB,  you will have 
to use an anti beta Gal antibody.
Finding an anti beta Gal enzyme antibody, that works in FFPWS +/- AR is not so 
easy.

Good luck

Carl

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From: histonet-requ...@lists.utsouthwestern.edu 


Sent: 08 January 2020 18:00

To: histonet@lists.utsouthwestern.edu 

Subject: Histonet Digest, Vol 194, Issue 4
 

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Today's Topics:


   1. X-gal staining (Margaryan, Naira)

   2. (no subject) (Waitts, Celeste)



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Message: 1

Date: Tue, 7 Jan 2020 18:21:31 +

From: "Margaryan, Naira" 

To: "'histonet-request (histonet@lists.utsouthwestern.edu)'"



Subject: [Histonet] X-gal staining

Message-ID:






Content-Type: text/plain; charset="us-ascii"


Hello histonetters,


I have request from a scientist to perform X-gal staining on the formalin fixed 
paraffin-embedded kidney.

I was wondering if there is any possibility to do this staining on FFPE tissue 
as well as if there any possibility to perform a peroxidase DAB  staining for 
the X-gal? If so, may I ask you for a detailed protocol to perform this 
staining.

Any input and explanation why it is impossible is appreciated.



Thanks in advance,

Naira




--


Message: 2

Date: Wed, 8 Jan 2020 16:46:18 +

From: "Waitts, Celeste" 

To: "'histonet@lists.utsouthwestern.edu'"



Subject: [Histonet] (no subject)

Message-ID:

<131bf77daa5d4ba08f9076d9afbf1...@exchnode1.local.centrastate.com>

Content-Type: text/plain; charset="us-ascii"


Question   VIP6SHORT BIOPSY RUNUSING CLEARITE

ANYTHING


Celeste Waitts

Histology Supervisor

Centrastate Medical Center

Freehold, NJ  07728

(732-303-5071)




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Re: [Histonet] Delay in embedding?

2019-12-18 Thread Hobbs, Carl via Histonet


I agree with replies/statements 3, 4, 5
Anyone who states differently have not experienced this contingency.



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Re: [Histonet] How to prevent bubbling in pressure cooker for immunohistochemistry procedure

2019-10-18 Thread Hobbs, Carl via Histonet
Hi Subash
Imho your sections are not sufficiently adherent to the slide(s)
It is not M/W "bubbling" that causes your problem
If you use Superfrost Plus/lab-coated Silane or even double subbed slides ( 
thanks Ole!) AND dry your sections onto the slides efficiently, you will not 
get section-loss.
NB: SF+ are expensive: if you cannot afford themexperiment with in-house 
Silane ( APES) or subbing, to coat your IHC slides.
If you use the latter methods, make sure you slides are very clean.
Unless the tissue is very fibrous/bone/cartilage/severely inflameddifficult 
to keep sections adherent.
In the latter case, Trajan 3 series can help much more than std coated slides.
What tissues are causing you problems?
For most soft tissues I use Superfrost Plus slides, dry the mounted sections 
under a fan O/N ( at least one hour)
For my peace of mind I then put the slides into a 60C oven for 30-60 mins 
before dewaxing.
Please post your opinion/results so far?
Best wishes
Carl



Carl Hobbs FIBMS
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Re: [Histonet] biopsy staining

2019-04-27 Thread Hobbs, Carl via Histonet
Hi
Are you processing to Pwax?
If so, I stain my mouse DRGS ( very small) using Haemalum.
5 mins max ( I use Gill's I) then blue in alkaline tapwater for 10 mins before 
Pwax processing
Stain from Formalin or alcohol but.rinse in dist water to remove before 
staining.
The "blue" stays nicely in the tissues, for embedding : sure, I then subject 
the sections to HIER without pretreatment as the citric acid treatment gets rid 
of any dye.
If doing dye-staining I will acid-alcohol treat the sections before staining.
Works well for me.

Good luck 

Carl 
 
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[Histonet] Re guinea pig IHC

2019-02-02 Thread Hobbs, Carl via Histonet



Ms Ruegg, as usual , gives excellent advice: avoid HRP.
Use Alk phos?
Block end. alk phos by using levamisole.

However, Ms Shivers does not state the fixation status of her FS.
Is the Gpig tissue perfused-fixed then frozen orfrozen as unfixed...then 
fixed?
Alsowhy 0.3% H2O2?
Use 3%kill the enzyme, not feed it?
NOT aq for FS
Make up in IMS ( 74OP)
No tissue disruption
However: you state that you get loadsa bubbles...so what? Is your section still 
attached to your slide?
Can you then carry out successful IF/IHC?
If yesno problem.
Sure, there's the argument that using a coagulant ( alcohol) in block is a No No
I never had a problemprovided that  the Formalin fixation was sufficient 
for unfixed crosections ( 15 mins)
I do STILL severely dislike FS ( sure, I spent many years in Diagnostic 
Histopath doing Operative FS) 
 Why not use Pwax sections, Ms Shivers?

Curious-illy

Carl

  
 
Carl Hobbs FIBMS 
Histology and Imaging Manager 
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London 
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From: histonet-requ...@lists.utsouthwestern.edu 

Sent: 02 February 2019 18:00
To: histonet@lists.utsouthwestern.edu
Subject: Histonet Digest, Vol 183, Issue 2
  

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Today's Topics:

   1. Re: cytology listserv (Webster, Thomas S.)
   2. Re: guinea pig IHC (Patsy Ruegg)


--

Message: 1
Date: Fri, 1 Feb 2019 18:28:30 +
From: "Webster, Thomas S." 
To: "'histonet@lists.utsouthwestern.edu'"
    
Subject: Re: [Histonet] cytology listserv
Message-ID: <93fc6a1cc62f41f5ad5890786ab04...@crh.org>
Content-Type: text/plain; charset="us-ascii"

Haven't seen any cytology listservs except the one for members of the ASC.  
There are some cytology facebook pages where you could get questions answered. 
This Histonet listserv is very informative.


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Message: 2
Date: Fri, 1 Feb 2019 18:39:54 +
From: Patsy Ruegg 
To: Jan Shivers , histonet
    
Subject: Re: [Histonet] guinea pig IHC
Message-ID:
    

    
Content-Type: text/plain; charset="iso-8859-1"

Especially a very blood tissue like GP spleen.

Patsy Ruegg, HT(ASCP)QIHC
Ruegg IHC Consulting
40864 E Arkansas Ave
Bennett, CO 80102
H 303-644-4538
C 720-281-5406
prueg...@hotmail.com



From: Patsy Ruegg 
Sent: Thursday, January 31, 2019 11:51 AM
To: Jan Shivers; histonet
Subject: Re: [Histonet] guinea pig IHC

In my experience it is not that GP have a higher peroxidase level, it is frozen 
sections in general that cannot be blocked with h202, unless they are fixed for 
a long time in formalin.  What are others experiences with h202 blocking on 
frozen sections.  I always  used an IHC detection system that did not require 
h202 blocking for frozen sections.

Patsy Ruegg, HT(ASCP)QIHC
Ruegg IHC Consulting
40864 E Arkansas Ave
Bennett, CO 80102
H 303-644-4538
C 720-281-5406
prueg...@hotmail.com



From: Jan Shivers 
Sent: Tuesday, January 29, 2019 12:58 PM
To: histonet
Subject: [Histonet] guinea pig IHC

Has anyone ever performed IHC on frozen sections of guinea pig tissue?  I
am experiencing an enormous amount of bubbling when doing the peroxidase
blocking step, even though I'm only using a 0.3% concentration of H2O2.
And when I say 'enormous', I mean it's like continuous champagne bubbles
rising out of the tissue, even after 20 minutes in the H2O2 solution.

I can't find anything in the literature that mentions guinea pigs having a
higher peroxidase content in their tissues.

Thanks for any help that anyone can provide.

Jan Shivers
Senior Scientist
IHC/Histology 

Re: [Histonet] Frozen sections and cold acetone

2018-10-26 Thread Hobbs, Carl via Histonet
I have always "fixed" in RT acetone for 10 mins
Have compared 0-60 mins/4C to RT acetone
Lower temps just limit the rate of reaction, imho.
I note "nuclear streaming" when I use acetone at any temp/time.

Imho, acetone is not an effective  fixativeit's a delipidiser.
So, give it 10 mins at RT.
If anyone thinks it's effective because it is a dehydrant….well, one re- 
hydrates the section to carry out IHC/ICC/IF.

It works very well for only a few abs.

When testing new abs out on FS/cell monolayers ( unfixed) I always compare 
Formalin, Acetone, Methanol and methanol/acetone 1:1
Imho

Best wishes to a great site/membership.
  
 
Carl 
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Re: [Histonet] Elephant Tissues

2018-09-07 Thread Hobbs, Carl via Histonet
If your tissues are embedded in Pwax and do not cutsorry!
You have XP with many tissues so, as corroborated, elephant should be also OK
You do not state what the elephant tissue is.
If it is skinmaybe a problemI have problems with human keloid skin 
samples.
I am currently assessing Trajan 3 slides ( for adherence problems with 
SuperfrostPlus sides)
As stated: no specie is any different.
Well, yes, there are differences.
For eg: worm Pwax sections are not as adherent as Ms/rat...etc.
I do not know why
Sigh

Great forum!

Carlos




  
 

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Re: [Histonet] Unstained slides

2018-09-05 Thread Hobbs, Carl via Histonet


Hi

Depends on what you mean by cryosections.
Unfixed/fixed?
Stored at RT, 4C, -20C, -80C.
Stored dry or in glycerol

So many variables!
My opinion is to store blocks and cut sections as required.
Least variables.
Sure, one loses some tissue everytime one cuts anewa good thing.

It IS complicated so, a project has to be thought out well in advance.

Stimulating post


 
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Histology and Imaging Manager 
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Re: [Histonet] Unstained slides

2018-09-03 Thread Hobbs, Carl via Histonet
I agree: cut only the sections needed.
Saves space.
Sure, you lose several sections of tissue when cutting more sections.
That is acceptable because, if this "oxidation" theory is true, then the 
initial sections will be no good.
However, careful organisation of exptl procedure before actual cutting will 
work very well.

Actually, not many Ags get "oxidised"for eg: I can demonstrate GFAP in 
sections that are a year old ( sure, they are stored at 4C just in case)
These slides are used for Yr 1 BSc practicals and are consistently positive.
Nobody knows why some Ags ( and not others) lose their antigenicity, imho
Oxidation is a vague reasoning.
Just like nobody really knows why HIER works: however, I am in the dipole 
moment school of thought, rather than the Ca++ skool
Sure, in Formalin-fixed specimens.

Curious-illy

Carl  
 
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Re: [Histonet] osmium tetroxide

2018-08-29 Thread Hobbs, Carl via Histonet
Please ask why Osmium is required?
Good advice given so far.
If it is to "stain" for myelin, surely an anti Myelin antibody should be used?
Visualise using a complementary Fluorophore to that which is indicated but not 
explained, in your request?



Good luck


  
 
Carl Hobbs FIBMS 
Histology and Imaging Manager 
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Re: [Histonet] Alcian Blue digested w Hyaluronidase - any alternatives?

2018-08-24 Thread Hobbs, Carl via Histonet
Vielen dank, Michael

Very kind of you to send this to me.

Alcian blue is indeed an interesting dye

I thought that it was no longer manufactured?

I am wrong, obviously.

I have used the CEC method many years ago when analysing articular cartilages 
and it is good to see that it is still a valid method to differentiate the 
various acidic mucins


Alles Gute


carl


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From: Dr. Michael Gudo (Morphisto GmbH) 
Sent: 24 August 2018 11:22:55
To: Hobbs, Carl
Cc: histonet
Subject: Re: [Histonet] Alcian Blue digested w Hyaluronidase - any alternatives?

Hello Carl,

Alcianblue is q quite interesting stain! Maybe this selection of a presentation 
helps you to find a suitable method. I attach you a PDF-document to this email. 
The slides are in german, but I think you will understand them anyway.

Kind regards
Michael


Am 23.08.2018 um 20:32 schrieb Hobbs, Carl via Histonet 
mailto:histonet@lists.utsouthwestern.edu>>:

Perhaps Alcian blue at pH3 ( all acidic mucins) on one slide/section  and Ab 
pH1 ( highly sulphated mucins only) on a sequential slide?
Sure, instead  use Alcian blue CEC method?
I will be interested to read other responses to your request.

Mucin-illy

carl




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Re: [Histonet] Alcian Blue digested w Hyaluronidase - any alternatives?

2018-08-23 Thread Hobbs, Carl via Histonet
You are right!

Thank you for correcting me.

Surely sialomucins will be positive for PAS and H.acid will be negative?


Curious-illy


Carl


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From: Mac Donald, Jennifer 
Sent: 23 August 2018 19:52:52
To: Hobbs, Carl
Cc: histonet@lists.utsouthwestern.edu
Subject: RE: [Histonet] Alcian Blue digested w Hyaluronidase - any alternatives?

The hyaluronidase is digesting out hyaluronic acid, a component found in 
connective tissue mucins.  This reaction is used to differentiate connective 
tissue mucins from epithelial mucins.  Hyaluronic acid and epithelial 
sialomucins will give the same staining results, both positive for alcian blue 
pH 2.5 and negative for pH 1.0.

-Original Message-
From: Hobbs, Carl via Histonet 
Sent: Thursday, August 23, 2018 11:32 AM
To: histonet 
Subject: Re: [Histonet] Alcian Blue digested w Hyaluronidase - any alternatives?

Perhaps Alcian blue at pH3 ( all acidic mucins) on one slide/section  and Ab 
pH1 ( highly sulphated mucins only) on a sequential slide?
Sure, instead  use Alcian blue CEC method?
I will be interested to read other responses to your request.

Mucin-illy

carl




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Re: [Histonet] cadaver tissue processing for histology

2018-08-23 Thread Hobbs, Carl via Histonet


Rinse in dist water ( or tap water) x3 over 30 mins
No big deal to do this but nice to get rid of extra smells in your processing 
reagents ( depending on where you start processing: I start in 90% 
alcoholsure, I ask for recd specimens to be rinsed in water then 
transferred  to 70% alcohol  before I will process them)
Hopefully, you don't want to do IHC as inclusion of Glut. is counterproductive.

Best wishes

Carl


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Re: [Histonet] Alcian Blue digested w Hyaluronidase - any alternatives?

2018-08-23 Thread Hobbs, Carl via Histonet
Perhaps Alcian blue at pH3 ( all acidic mucins) on one slide/section  and Ab 
pH1 ( highly sulphated mucins only) on a sequential slide?
Sure, instead  use Alcian blue CEC method?
I will be interested to read other responses to your request.

Mucin-illy

carl


  
 
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Re: [Histonet] Unstained slides - how long are they good for?

2018-08-19 Thread Hobbs, Carl via Histonet


I agree with Jamie

Only a few Ags are "oxidised" ( that's the term used, I recall) but, don't let 
it be YOUR protein of interest.
If you really are concerned, cut fresh sections and immunostain along with your 
stored sections.

Imho: cut as few sections as you need.
Store any unused at 4C

Best wishes
 
 
Carl Hobbs FIBMS 
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Re: [Histonet] Calretinin for Hirschsprung's

2018-08-13 Thread Hobbs, Carl via Histonet
When I was doing them biopsies (  pre-operative) to establish status, we used a 
std histochemical method on frozen sections of biopsy material ( visualising 
acetylcholinesterase activity).
It used Osmium to enhance /darken positivity so, NOT recommended these days.
I recall somebody leaving the lid off the Osmium ( stored at 4C)…..the fridge 
plastic lining was BLACK the next day!

So, any antibody that identifies nerve fibres and ganglion cells should be 
equally effective, using IHC/IF?

Sure, interpretation is critical ( identifying presence/absence of ganglion 
cells and "significant" increase in lamina propria of nerve fibres as 
compensatory mechanism)

There must be an internationally recognised/accepted protocol?
Which technique does Great Ormond Street Hospital/St Thomas' Hospital  use, 
these days?

Curious-illy

Carl
  
 
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Re: [Histonet] Bouin postfixation

2018-06-04 Thread Hobbs, Carl via Histonet


Hi Pablo

What is the name, source and catalogue number  of your antibody?

( maybe you do not need to fix in Bouin's fixing fluiddo you know, as a 
fact, that Bouin's fix is better?)


Imho, once you have fixed in Formalin ( depending on the time in fixing fluid), 
you cannot successfully "refix" in another fixative.


Also: "embedding": do you mean in OCT or Pwax?


Curious-illy

Carl


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From: histonet-requ...@lists.utsouthwestern.edu 

Sent: 04 June 2018 18:00
To: histonet@lists.utsouthwestern.edu
Subject: Histonet Digest, Vol 175, Issue 3

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   1. Bouin postfixation (SANCHEZ QUINTEIRO PABLO)


--

Message: 1
Date: Sun, 3 Jun 2018 18:00:43 +
From: SANCHEZ QUINTEIRO PABLO 
To: "histonet@lists.utsouthwestern.edu"

Subject: [Histonet] Bouin postfixation
Message-ID:



Content-Type: text/plain; charset="iso-8859-1"


Dear histonetters,

I have to do immunohistochemistry with an antibody that works better in Bouin 
fixed samples. But I am afraid that my samples -just unprocessed- are in 
formalin.

Do you think that it could be help to transfer them to Bouin 24 hours and then 
70 ethanol and embedding?

Thanks in advance

Pablo Sanchez-Quinteiro
Lugo. Spain


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Re: [Histonet] Congo Red

2018-03-24 Thread Hobbs, Carl via Histonet

That's a good point, Bob (mouse Amyloid controls for human sections)
The amyloid produced by these various mouse models (TASTPM, TGs) is   human 
amyloidas you know.
I suspect that it wouldn't be accepted as a positive control ( I don't know) 
because it isn't pathologically produced
It is genetically induced ( as you know)

I have posted images of IHC- and Congo red-positivity ( the latter also under 
fluorescence microscope) of amyloid in mouse brain here ( Histonet  Images 
archive)

Respectfully


Carl
  
 
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Re: [Histonet] processing Dosophilla flies

2018-02-14 Thread Hobbs, Carl via Histonet

Hi
Processing them , how?

To Pwax?
To snapfreeze?
To resin?

Kind regards

Carl


  
 
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Re: [Histonet] Histology Hacks

2018-01-13 Thread Hobbs, Carl via Histonet
I thought Histonet was a primary source of "hacks"?
Obviously...not.
I have many hacks, as many others do, too...
Have to admit that Histonet is rather Conservative/lazy

Eg: In Imagesthere's a potential MASSIVE catalogue so, why do you not add 
your images to the Histonet archive???
Histonet image archive should be better/bigger than ANY other Dye/IHC/IF 
archive?

It should be, as is HPA/Gensat/Allen , a REFERENCE
Sigh, it is not.
yet.
?Or , I am wrong?
Please tell me 
Carl



  
 


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Re: [Histonet] Beta-Amyloid antibody for IHC

2017-12-28 Thread Hobbs, Carl via Histonet

If you use clone 6E10 it will demonstrate beta Amyloid only, after Formic acid 
AR
After Citric acid HIER, APP  will also be demonstrated 
Imho
Check out Biosource ( Invitrogen) 44-344 and 44-348?
Something about x-reactivity between Abeta 1-42 and Abeta 1-43?
Or not.
I'd be interested to know if this is valid

Carl
 
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[Histonet] logging in to Histonet Images

2017-10-22 Thread Hobbs, Carl via Histonet
Hi

My apologies for using this wayI don't know how else.



I have a new PC ( lost all my links) and forgot how to log in/haven't got the 
link , then upload images/edit them

All I can do is upload images.

I'd be most grateful for link so I can edit my posts.

Thank you!



carl


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[Histonet] What happened to Ultraclone/PGP9.5?

2017-06-03 Thread Hobbs, Carl via Histonet


Ultraclone
THE supplier of PGP9.5 for many years !
Respect to them/him/her/LTB
No longersigh.
Ultraclone:  "legendary"...chuckle
 

Sureother Suppliers now offer anti PGP9.5 abs
Why then do they still call it "PGP9.5"??
We now know what the protein is.

PGP: "Pretty good protein" I recall?
Why the 9.5?
Usually a clone but, but Ultraclone ab was a rabbit poly.

One could only order via fax, I recall.
Isle of Wight location: Rossiters Farm.

Any more  info re Ultraclone's history  would be most appreciated.

Curiously

Carl  
 
  
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Re: [Histonet] Disposal of Bouin's Solution

2017-05-13 Thread Hobbs, Carl via Histonet


"I agree it is very dangerous.  When I discovered a dried bottle of picric acid 
someone had donated to the school right after I first came to the university.  
I had to call the fire department and the bomb squad came to get it.  They took 
it to the firing range and blew a huge sized whole in the ground, this was a 
small bottle of picric acid.  Of course we made the local news, but get rid of 
it if possible or keep it under water as Fred says. "

Chucklewhy didn't you just wet it?
It would only be "dangerous " if you hit it with a hammer 

The explosive used was FAR bigger than the bang from one bottle of Picric acid
Overkill.
The story about a factory involved in Picric acid explosion involves 
several magnitudes higher than any volume stored in a Lab

In the volumes used in a laboratory.not really a problem unless used 
TOTALLY  incompetently/maliciously

Sureif incompetence is thereyou will get a bang akin to that one used 
to be able to buy from a Joke shop.

 FORMALIN is toxic, poisonous...it KILLS
Don't use it!
Do we stop using it?
Hmmm

In a well- run laboratory, I am FAR more concerned regarding the toxicity of 
stepping outside of my lab into the street where them cars are continuously 
spewing out far more toxic fumes.
ALL OF THE TIME
Yepalso the particulate matter from them car tyres that we breath in 
Does anyone regulate this?
Nope!
So, all you car drivers that are concerned re them small amounts of laboratory 
Picric acidthink again.

Best wishes

Carl







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Re: [Histonet] Disposal of Bouin's Solution

2017-05-12 Thread Hobbs, Carl via Histonet
Not a disposal query.

"There are substitutes for it for most purposes."

Bob, I am interested in "most" and "substitutes"

In what situation does "most"   not apply?

What substitutes?

For example, I  read that tissues are fixed in Picric acid-containing Formalin 
for IHC/IF.
Why?
What's the logic/rationale?


Always listening/reading/asking/learning 

Carl



  
 
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Re: [Histonet] CD8 for rat - also happy to take human

2017-04-21 Thread Hobbs, Carl via Histonet

I am very interested to have your information!
Thank you

Best wishes

Carl

  
 
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Re: [Histonet] ultraclone RA95101 PGP 9.5

2017-02-26 Thread Hobbs, Carl via Histonet
Hi
Ultraclone no longer make this Ab, sigh

Always a strange Supplier.Rossiters Farm/Ultraclone's setup  always made me 
think of Royston Vasey

However, I have replaced it with Abcam's ab108986
See images of results on  ms, rat and human FFPWS on Histonet Images website
I think it's excellent ( I use it mainly to see/count  C fibres in mouse 
epithelium so, it's GOT to be good).
Abcam  also do an excellent Ms monoclonal ( see Histonet image site also)
Sure, DAKO's ( Agilent) anti PGP 9.5 is also good for human but, I have not 
tested it on ms/rat.

Or Cedarlane:

https://www.cedarlanelabs.com/Products/Search?location=1=Description=ULTRACL=PGP+9.5=0=0
which offers alternatives.

Good luck!
  
 
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[Histonet] Immunohelp website?

2016-12-17 Thread Hobbs, Carl via Histonet

Hi

I am grateful for the opportunity to load IHC/IF etc images on this website.
Thank you for creating it.
Shame that more Immunopeople do not upload their images.
Why do they not do this?
Perhaps Histonet would be interested in expanding?
Thus , any chance of you Main guys creating an Immunoportal -equivilent??
A great website, devised /run by the excellent Hogne!
Hogne is long gone, sadly ( sure, only re his website: I am sure he is alive 
and wellI wish him well)

Hogne had a Q and A , a methods and an image module.

Histonet jest has a general Q forum?
Which is invaluable buttoo broad?
To be sure...I could be  missing the point

Respectfully,

carl





  
 
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[Histonet] PGP 9.5 Ab x-reactivity

2016-11-08 Thread Hobbs, Carl via Histonet

Hi
I'd be grateful if anyone can confirm whether or not Dako's  Z511601-2   or 
Leica's ( Novacastra's) PGP9.5-L-CE  anti PGP 9.5 antibodies work on 
mouse/rat Formalin-fixed Paraffin wax sections.

Thank you


Carl

  
 
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Re: [Histonet] DAB neutralization and disposal

2016-09-30 Thread Hobbs, Carl via Histonet

Store it and give it to your Chemical people ( sensible) orfollow John 
Kiernan's most excellent advice that he garnered ( in Histonet archives)

I wonder what people do, who use polymer DAB kits?
I reckon they chuck it down the sink.do the Suppliers of such kits advice 
appropriate disposal?

Curiously

Carl




  

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Re: [Histonet] head kidney issues

2016-09-15 Thread Hobbs, Carl via Histonet

It's endogenous biotin, Tyrone.
Make your own biotin blocking kit or buy  RTU kit.

Also, endog. peroxidases are eliminated by 3% aq H2O2 ( saves methanol) for 
10mins at RT
Also, don't bother with permeabilisation.you've done all that by processing 
the tissue to Pwax
Also, use 10% Formalin.
That's what I use for my zfish Pwax  IHC

All suggestions:  imho.

Have a look in Histonet image archives for IHC Pwax sections of z.fish

Best wishes

  
 
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[Histonet] PFA Fixed tissue not sticking to slides?

2016-07-31 Thread Hobbs, Carl via Histonet


No...never add sucrose to "PFA" when fixing tissues for freezingor any 
other time.
Fix, then sucrose- immerse until tissue sinks to bottom of receptacle if 
you can't snap-freeze effectively 


  
 
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Re: [Histonet] PFA Fixed tissue not sticking to slides?

2016-07-30 Thread Hobbs, Carl via Histonet

Hi Jenny.
Can you use Pwax embedding as an alternative?
H will always be better on Pwax sections. 
IHC will also be in many instances.
What abs are you probing with?
Single/double-labelling?



Yesyou are fixing for too long ( for frozen sectioningfor Pwax you can 
fix your specimens for a week and still not suffer IHC-problems: after HIER 
they will or will never work, depending upon ab)
PFA( Formalin) fixed sections are well-known for not being as adherent as 
unfixed frozen material.

Why not freeze unfixed?
No sucrose required ( all that does is allow for slow freezing without, in most 
cases, formation of ice-crystals: good snap freezing does not need sucrose 
pretreatment)

If you are after good morphology then Pwax is the way to go, imho.
If you have to cut PFA-fixed then frozen tissues, after mounting on slides 
stick them in a 50C oven for 2hrs.
Use Superfrost Plus slides.
Then use or, store at 4C for a week or freeze.
For the latter 2, ALWAYS take out of fridge/freezer and immediately place under 
a fan/operating fume hood.
Do not allow condensation to form.
Orplace them immediately into that same 50C oven for an hour.
Do not do this to unfixed frozen sections!

Sure, check out EC's excellent advice ( as always)  re slides.

Interestedly,
Carl

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Re: [Histonet] Porcessing FFPE tissue without alcohol??

2016-03-26 Thread Hobbs, Carl via Histonet
Thanks, Liz.
If you look at fat all the time, using Osmium.you then are not sure if you 
use K-dichromate?
I am a tad confused

Alsowhy not trim the block too much?

Best wishes,

Carl
NB: Rene stated that I wouldn't be able to use any other fat stains...that's 
the point, Rene.
I don't need any other.
I commit to Osmium.

Yep...there are many variations for fat staining.
Imho...most are histochemical mythology.
Osmium "stains" fat...histologically.
As do  the conventional fat-soluble dyes when using frozen sections.
I would only listen to alternatives/disagreements from JKiernan.

I am still waiting for the next "generation" Histo person.
Cook, Kiernan.who are the other Seminals??

Enquiringly

Carl


From: Elizabeth Chlipala <l...@premierlab.com>
Sent: 26 March 2016 15:58
To: Joanna; Rene J Buesa
Cc: Hobbs, Carl; histonet
Subject: RE: [Histonet] Porcessing FFPE tissue without alcohol??

We use osmium post fixation to look at fat all of the time in mouse liver, 
nerve and muscle samples.  It works well, sample size needs to be thin, samples 
are friable and can crack easily.  We use a specific procedure for this it 
includes potassium dichromate I think, I'm at home but on Monday I can send the 
reference.  One more thing don't trim into the block too much.

Liz

Elizabeth A. Chlipala, BS, HTL(ASCP)QIHC
Premier Laboratory, LLC
PO Box 18592
Boulder, CO 80308
(303) 682-3949 office
(303) 881-0763 cell
(303) 682-9060 fax
l...@premierlab.com

Ship to address:

Premier Laboratory, LLC
1567 Skyway Drive, Unit E
Longmont, CO 80504

From: Joanna via Histonet [histonet@lists.utsouthwestern.edu]
Sent: Saturday, March 26, 2016 9:20 AM
To: Rene J Buesa
Cc: Hobbs, Carl; histonet
Subject: Re: [Histonet] Porcessing FFPE tissue without alcohol??

How about Sudan Black stain?

> On Mar 26, 2016, at 4:32 AM, Rene J Buesa via Histonet 
> <histonet@lists.utsouthwestern.edu> wrote:
>
> The only problem I see is that the fat will be preserved, as you wrote, as a 
> black osmium oxidate but you will not be able to use any "standard" fat 
> stain; otherwise it will work.René
>
>On Friday, March 25, 2016 2:41 PM, "Hobbs, Carl via Histonet" 
> <histonet@lists.utsouthwestern.edu> wrote:
>
>
>
>
> Fix the tissue in Formalin, wash well in dw, then place very small pieces 
> into Osmium tetroxide solution ( std soln for TEM post-fixation)
> Processing to Pwax as usual.
> Basically, you will see lipids as black ( oxidised osmium)
> That's the only way to demonstrate solvent- soluble lipids, using Pwax 
> processing.
> Sure, there are caveats but, in the main...it will be Ok, imho.
> I invite comments as I may be doing exactly this very soon, to count 
> myelinated nerve fibres in a sciatic nerve.
>
>
>
>
>
> Carl Hobbs FIBMS
> Histology and Imaging Manager
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Re: [Histonet] Porcessing FFPE tissue without alcohol??

2016-03-25 Thread Hobbs, Carl via Histonet


Fix the tissue in Formalin, wash well in dw, then place very small pieces into 
Osmium tetroxide solution ( std soln for TEM post-fixation)
Processing to Pwax as usual.
Basically, you will see lipids as black ( oxidised osmium)
That's the only way to demonstrate solvent- soluble lipids, using Pwax 
processing.
Sure, there are caveats but, in the main...it will be Ok, imho.
I invite comments as I may be doing exactly this very soon, to count myelinated 
nerve fibres in a sciatic nerve.



  
 
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Re: [Histonet] Human nuclear antibody MAB1281

2016-02-26 Thread Hobbs, Carl via Histonet


I had/have the same problem with that ab on FFPWS +/- AR
Also negative, under same conditions:
Serotec's 6970-1257, Abcam's ab5675

I use 2 abs on hu teratomas in mouse host:

Takara clontech STEM121 antibody
Abcam anti MTCO2 ab110258

Images to be seen on Histonet Images site




  
 
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[Histonet] What has happened to Histonet Images site?

2016-01-17 Thread Hobbs, Carl via Histonet

Curiously,

Carl



  
 
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Re: [Histonet] IgG4

2016-01-13 Thread Hobbs, Carl via Histonet
Images of IgG4-positive cells in tonsil FFPWS on Histonet Images website





  
 
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Re: [Histonet] IHC on old slides

2015-11-13 Thread Hobbs, Carl via Histonet
Amplification is the only way.

Possibly, tyramide amplification will help.

It will cost you to buy a kit...sure, make your own butyou have to weigh up 
pros/cons


Sureyou will have to play with variables.

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Re: [Histonet] F480 antibody

2015-08-23 Thread Hobbs, Carl via Histonet
Doesn't work in Pwax sections...for me.





  
 
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Re: [Histonet] Re. Decalcification with formic acid sodium

2015-07-26 Thread Hobbs, Carl via Histonet
Mouse knee joints:
done lots of decalcified FFPWS for assessment of articular cartilage 
degeneration models.
See Histonet images for a Tol blue image.
Decal in 10 % EDTA for 3 days on a rocker at RT.
Sure5days if you are worried.
No difference in Immuno-reactivity, imho.
If you want to use buffered Formic acid, use Formic acid; sodium formate.
Use of citric acid with Formic acid does not make a buffer.
It's just mixing two relatively mild acids.
However, I am sure that Prof Kiernan can further enlighten us.

Respectfully,
 
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Re: [Histonet] tissue fixation-formaldehyde concentrations

2015-06-06 Thread Hobbs, Carl
I have to agree with the student, John.
Sure, he is coming from ignorance ( not a bad situation: naivety is not a 
fault...   we all are/were there at some point;-)
Sure...I agree with you re the using of the word  Paraformaldehyde as a 
fixative
I often sigh when used.

However, differential fixation ( zonal fixation) has always been an issue.
We often see the zonal effects of this?
Particularly in lymph nodes ( parenchymatous tissues)
Obviously, when immersion fixing.
Most often ...NOT with agitation.

Respectfully,

Carl 
 
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Re: [Histonet] RE..... murine CD4, CD8 and CD68 for FFPE tissue

2015-05-18 Thread Hobbs, Carl

I use the anti CD68 clone FA-11 ( obtained from Abcam).
It works very well on frozen sections but, I have been unable to get any 
positivity on Pwax sections ( using +/- Citric acid pH6 HIER)

Carl
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[Histonet] Re: thanks (Truscott, Tom)

2015-01-01 Thread Hobbs, Carl
All the very best, Tom.
I checked out where you workedseems an essential service that can't be 
replaced.
Sureprivatised?

I don't know you butlosing/discarding  essential skills is awful.


I hope you are as successful in the future as you have been in the past.

Respectfully,
Carl



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Today's Topics:

   1. thanks (Truscott, Tom)


--

Message: 1
Date: Wed, 31 Dec 2014 19:42:53 +
From: Truscott, Tom ttrus...@vetmed.wsu.edu
Subject: [Histonet] thanks
To: 'histonet@lists.utsouthwestern.edu'
(histonet@lists.utsouthwestern.edu)
histonet@lists.utsouthwestern.edu
Message-ID:
9ef5279ebdfe6e4fb6605e8f183a0027d69c6...@cvm76.vetmed.wsu.edu
Content-Type: text/plain; charset=us-ascii

Many thanks to all who contribute and keep the histonet running. I'm working my 
last day here at USDA-ARS ADRU within WSU which has been a very rewarding and 
enjoyable occupation. I was honored to be on 14 publications in 12 years with a 
few more in the works. Due to Federal budget constraints, they don't plan on 
replacing me with another BS An. Sci. ASCP HT. Happy New Year to you all! 
Thanks again Tom T= Thomas C. Truscott


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Re: [Histonet] FoxP3 and Geminin Immunohistochemistry

2014-12-03 Thread Hobbs, Carl

​I have no xp re Geminin but, I have posted images of FoxP3 in FFPWS on the 
Histonet Images website.
The two abs work well for me.
I used a homemade std Citric acid HIER solution.
Looks like you have choices, given Katy Milne's response!

Good luck.

carl





  
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[Histonet] RE: lab math: ihc dilution

2014-11-22 Thread Hobbs, Carl
?Imho, the Ab concentration is irrelevant.

I consider dilution factors more important.


You can have a 1mg/ml Ab concyet it may not  work in any particular 
application.

Think affinity/avidity.these are critical.





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[Histonet] Re: can you defrost and fix muscle tissue?

2014-10-11 Thread Hobbs, Carl
Your project reads ill-thought out!

I agree with Elizabeth re defrosting.
Should be fine.

Yes, if your freezing is slow, you will most likely have ice-crystal artefact.​
You will see this in the Pwax sections.
You have large pieces of muscle.
Good that you fixed for longer.
Imho, if you are not requiring Immunostaining, the longer the fixation...the 
better ( within reason)

I would assume your problems are a result of UNDER processing.
Muscle pieces that size, I would always process to Pwax over 40hr schedule.
What was your processing schedule?

I often Pwax process 1x1x0.5cm pig skeletal muscle and have no problems 
cuttingnope, no ice involved.
Just a sharp knife and, a gentle rub of the block face every section, using 20% 
alcohol -damped soft tissue.

If you are examining blood vesselsyou HAVE to perfuse-fix, imho.for 
best results.
When you get damn fine sections:
Do an HE and an HVG, initially.
As Elizabeth statedstick to Formalin fixation.

NB: PFA is not a fixative.
It is a polymer of methylene glycol and is...a powder!
When dissolved it forms multiple forms : methylene glycol is the monomer.
What you buy when you get 40% Formalin is methylene glycol in solution ( 
Formaldehyde gas dissolves in water to ~ 40% saturation).
Dilute that 1/10 and you get 10% Formalin ( same as 4% PFA)
The ONLY reason them Molecular biologists/chemists decided to use PFA is cos 
they have NO idea re Formalin/methylene glycol fixation!
Neither do I, chuckle.
Well.the reason they decided to use Paraformaldehyde powder is because the 
immediate product is , more or less, pure methylene glycol.
In bought 40% Formalin, they add a small amount of alcohol to retard formation 
of Formic acid and polymerised methylene glycol( PFA).
So.them geezers thought: OMG...alcohol! Noit will change the chemistry 
of fixation!
Surethem geezers NEVER bothered to look at most clinical labs in the world 
who buy/use ~40% Formalin to make up their 10% Formalinwith great success!!
Imho, nobody has produced a convincing raison d'être for adding PBS.
It is added because we think of physiologyadd PBS to a fix and we get 
...better fixation.
ChuckleFormalin ( methylene glycol) KILLS cells.
Adding PBS...hmmm.
I still do.chuckle.

Curiously, as ever.

carl


 
 
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[Histonet] Image uploading

2014-07-12 Thread Hobbs, Carl

I make mistakes when I upload images
So, I'd be most grateful for an edit function to be included.

Thanks for the opportunity to share images.
Sure, the excellent Immunoportal was The Best...I hope that Histonet can equal 
that website quality?

Carlos  
 
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[Histonet] Submitting images

2014-05-05 Thread Hobbs, Carl
If possible, can an edit facility be included?
Sometimes I do a typo error

Mea culpa-ly.

Carl



 
 
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[Histonet] Re: Posting Images for Histonet (Marvin Hanna)

2014-04-24 Thread Hobbs, Carl

Looks a great idea; simple to use.
Thanks.
I used to post images on the impressive  Immunoportal website but, that is 
sadly no more.

Carl


 
 
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[Histonet] Re: Alizarin Red on undecalcified bone

2014-03-14 Thread Hobbs, Carl

 
 
 
 
 
Strip off all soft tissue ( if you don't need it)
Fix ( in Bancroft and Stevens the method uses alcohol but, we have used 
Formalin pH7).
Follow the Tripp and MacKay method.

 
 
 
 
 
 
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Re: [Histonet] rat's hind paw skin

2013-12-04 Thread Hobbs, Carl
If they are perfused, you don't need to worry about stopping them from curling 
( they will be fixed/rigid).
Get as large a piece as possible: preferably two pieces.
(The second piece  can then be further fixed for 2hrs before placing into 30% 
sucrose until the specimen sinks, then snap-freezing.
If you don't have a cryostat, forget this.)
The piece for Pwax: place in a cassette that you know has holes too small for 
the specimen to fall thro.
I use those plastic mesh inserts: helps to keep tissue flat and safe. They 
fit nicely into std plastic cassettes.

If your current processing protocol is good for your specimens, it will be fine 
for rat footpad skin.
( if you are going to do HIERyou will have to use charged/coated slides, of 
course.)
You will lose some integrity of the dermis ( collagen will be disrupted), 
unless you play around with sub-boiling temps.
Thanks and.good luck.
Carl


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Re: [Histonet] rat's hind paw skin

2013-12-03 Thread Hobbs, Carl

Barry has jolted me into noticing...thanks.
I occasionally prepare such specimens for Pwax for IHC to detect 
PGP9.5-positive nerve fibres in the epidermis.

Sostd 10% Formalin fixation ( us PFA if you must :  I fix for 24 hrs 
minimumno problem if longer fixed ) and processing. 
I get the researcher to place the fresh  dissected footpad sample onto filter 
paper, so it fixes flat ( otherwise it might curl).
Doesn't matter if it comes off after fixation.it will stay flat during 
processing.
Sure, if you are concerned that it will not stay flat, use plastic mesh inserts 
to sandwich the skin...place them in std plastic processing cassettes.
If you are looking for melanin, you will see it on a HE, if it is present.

Appreciate any comments on this, Barry.
Always grateful for further insights.

Carl

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[Histonet] Re: Cleaning stainless steel base molds

2013-11-23 Thread Hobbs, Carl


I put mine in my 60C oven for a day or longer.
Then re-use themnever have a problem... for 20 yrs.

Sure, place on absorbent paper in most appropriate orientation.

Sure, when I was in a lab where I was not in charge...I had to use the recycle 
routine on a processor or...manual xylene clean.
Not necessary.

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Re: [Histonet] Fixing whole testes

2013-08-24 Thread Hobbs, Carl
I would immediately bisect them longitudinally with a sharp blade, then 
continue to fix for at least two days ( length of fixation time is irrelevant 
for anatomical purposes).

You should have done much earlier ( sure, you run the risk of loss of 
anatomical relationships but.I can't see what choice you have, given the 
size of the tissues.

I am always interested in others' views.

Yes and, fix on a rocker roller at RT.

A faster penetration fixing fluid would have been betteryou would have to 
test a few, under your conditions.

NB: Formalin penetrates a 1cm cube of gelatin 250mm in 24hrs so, penetration 
through a dense heterogeneous tissue, especially the initital penetration of 
the T albuginea, will be much slower, allowing for autolytic ( necrotic, 
really, as the tissue is dead) changes towards the centre of the tissue.



Best wishes,



Carl



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Re: [Histonet] Fixing whole testes

2013-08-24 Thread Hobbs, Carl
My sincere apologies...I left the HTML option on, for the 1st post.



I would immediately bisect them longitudinally with a sharp blade, then 
continue to fix for at least two days ( length of fixation time is irrelevant 
for anatomical purposes).
You should have done much earlier ( sure, you run the risk of loss of 
anatomical relationships but.I can't see what choice you have, given the 
size of the tissues.
I am always interested in others' views.
Yes and, fix on a rocker roller at RT.
A faster penetration fixing fluid would have been betteryou would have to 
test a few, under your conditions.
NB: Formalin penetrates a 1cm cube of gelatin 250mm in 24hrs so, penetration 
through a dense heterogeneous tissue, especially the initital penetration of 
the T albuginea, will be much slower, allowing for autolytic ( necrotic, 
really, as the tissue is dead) changes towards the centre of the tissue.

Best wishes,

Carl

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RE: [Histonet] Bone/cartilage/epithelial tissue stain

2013-08-24 Thread Hobbs, Carl
A HE will allow you to identify those three tissue types, in  normal tissues, 
of most organisms ( certainly 
in avian embryos, imho), IF you  know your Histology.

There is no stain/demonstration technique that will substitute for this 
knowledge, imho.
Sure, a special stain will help to confirm the tissue type to a high degree.
I usually start with staining the section with Alcian blue pH3, then place in 
Hx ( I use Gill's 2sure, they state you must use Iron Hx...not necessary, 
for me) for 10 mins.
Then place in Van Gieson's solution until what I know is collagen type I is red.

I hope this adds to previous excellent posts.
Best regards,

Carl

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Re: [Histonet] Invitrogen A6455 rabbit anti-GFP dilution for

2013-08-05 Thread Hobbs, Carl
 IF using Alexa - conjugated secondaries ( indirect IF) should give you the 
same results as a std  stABCpx-DAB detection, for any given dilution of  
primary Ab.
However, if you are using enhanced DAB.sure, the primary Ab will have to be 
less dilute when visualising with an  indirect IF method.
So, do one run with your primary at 1/5K, 1/10K, 1/20K ( on three sequential 
sections, of course) ...detecting with, for eg, Alexa anti Rabbit 594 at 1/1K.

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RE: [Histonet] Processing thin slices of mouse cerebellum

2013-05-31 Thread Hobbs, Carl
http://www.cellpath.us.com/magento/cellpath-on-line-shop/specimen-processing-and-embedding/small-biospy-processing/cellsafe/cellsafe-biopsy-capsule-blue.html

I  find them very good for brain slices.
There is a deeper and a shallower space, depending on which way they are folded.

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[Histonet] CD45 Ab

2013-05-31 Thread Hobbs, Carl
I need  an Ab against CD45 ( LCA) that works in mouse FFPWS.
I would be most grateful for a solid recommendation ( you know it works, rather 
than what is said on spec sheet)
Thank you

Carl

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re: [Histonet] Pen-Fix

2013-04-20 Thread Hobbs, Carl
If you want this recipe for fixing tissues for FFPWS, then performing Immuno: 
doesn't work +/- any AR, for me.

Nice for morphology but, no better than many other precipitant+additive fixing 
fluids.
Imho, it's like many other fixes that don't really work in a BIG way.
Well, imho, if they all did...we would all be using them?

Well, we all use HIER... THAT was a Paradigm shift!

NB: a fixative is a chemical: dissolved in a solvent, it is then called a 
Fixing fluid.

Pedantically,

Carl

Sent from my PC ;-)




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re: [Histonet] Immunofluorescence on FFPE skin

2013-03-21 Thread Hobbs, Carl
To me, the critical data is:  which Abs do you want to use on FFPWS of skin, 
please?
If you do chromogen IHC on your skins already, with them Abs, you can do IF.

Sure, autofluorescence can be a problem but..not that big a problem.

Interestedly,

Carl
NB: that article is..strange.

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[Histonet] Re: zebrafish and IHC

2013-02-23 Thread Hobbs, Carl
Good point by Teri Johnson.
I don't decalcify, thus my results may well be compromised by this 
procedureand, sure, the bone is disrupted.
I am only interested in CNS/PNS so, I don't worry about bone/cartilage 
disruption.
I fix in std 10% NBF.
Imho, it is better to overfix rather than to worry about optimal short 
fixation, if you are using HIER.

Utilitarily,

Carl

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[Histonet] Re: zebrafish and IHC

2013-02-22 Thread Hobbs, Carl
Should be no difference ( no tricks)
Have a look here for some images:
http://www.immunoportal.com/


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[Histonet] Re: zebra fish experts......

2013-01-11 Thread Hobbs, Carl

Why are you fixing ?
Try unfixed frozen?
Or, why not Pwax embedded?
They cut well in Pwax.
Sure, you may have to polish the cut surface with tissue damped in water/20% 
alcohol to prevent cracking/curling just before each section is cut.

Or, after fixation, place in 30% sucrose until kidneys sink.
Store at 4C until you freeze ( if not immediately).
You will have to try several approaches until you find the correct one for your 
Lab.

Good luck.

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[Histonet] Re: tricks about antibody generated in human on human

2013-01-11 Thread Hobbs, Carl
Good advice given.

Biotinylated primaries to be followed by stAvidin-488 or stABCpx-DAB, for eg.
Or, if biotinylated primary gives good result with above but, at low dilution 
factor,  use tyramide amplification?

Human- on- human can be just fine, depending on what proteins you want to 
demonstrate and, in what tissue.
What tissue are you working on?
What tissue prep ( Pwax/frozen)?
You  using patients' serum containing auto-antibodies?

Or, do you have a human that you are injecting human Ags into, then bleeding 
that person so you can harvest Abs?


Scary!

NB: You suggested diluting out your secondary...not good as you will just lower 
your specific signal as well, imho.

Curious Carl


Carl Hobbs
Histology Manager
Wolfson CARD
School of Biomedical Sciences
Kings College London
Guys Campus
SE1 1UL
Tel: 020 78486813
Fax: 020 78486816
020 78486813



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[Histonet] Re: holly nuclei bat man

2013-01-06 Thread Hobbs, Carl
Hmmm...I have raised this issue beforeno answer.
All answers to datepure conjecture!

Lol...if you meant Holly.rather than Holy or even Holey...nice one, 
Batwoman!

Caped Crusader.



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[Histonet] CD64 Pwax Ab

2012-10-18 Thread Hobbs, Carl
Hi,
If anyone knows of an anti CD64 Ab , that is specific for FCGR1 ( not 
x-reacting with II, III for eg), that is known to work on Human FFPWS, I would 
be most grateful for Supplier and #.

Thanks.


Carl
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